Spo10450 (gene) | SpinachBase

Overview


Name	Spo10450
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Putative mitochondrial outer membrane protein porin-like (Voltage-dependent anion-selective channel protein-like)
Location	SpoScf_50209 : 141 .. 763 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTGATGAACCTGCCCCTGGCTTGAAGGCTATTTTTAGTTTCCGTGTTCCTGATCAGAGATCTGGCAAGGTACCATACAATTATCTTTCTAGTATTTTCTTACCTAAAGAGGCATGGTTCAAGATACTACGGGATAATGGTTCTAATTTGTGGAGTATAAATTATGTTAACAGGTTGAGCTTCAGTATTTGCATGAGTATGCTGGCATCAGCACAAGCCTTGGTTTGACAGCAAACCCCATTGTCAACTTTTCTGGTGTTTTTGGAAACAGTACTCTTGCTTTGGGTACTGACCTCTCATTTGACACTGCTTCTGGAAACTTCACCAAATGCAATGCTGGGCTGAGCTTTACTAATGATGATCTCATTGCATCTGTGAATGTGTAAGTAGTTTTTGTTATACTAATCAGCAGATTATCACTTTGGTATATCCATGTGCAACATTTAATTGCTGTTCAGAAATTAAAGAAAGANGGATTCTGCTTGTCGAAAACTACTTAATAATGTTCTAATCTTTCACCTTTGGCTGTTGTTGAGTACGTGTATCATTTGAAAGCTGGATACTGGATATACATTTCTGATACACTTGTGATTTTGTTTACTTTTGGGTACTGCAGGAACGAC

mRNA sequence

GTTGATGAACCTGCCCCTGGCTTGAAGGCTATTTTTAGTTTCCGTGTTCCTGATCAGAGATCTGGCAAGGTTGAGCTTCAGTATTTGCATGAGTATGCTGGCATCAGCACAAGCCTTGGTTTGACAGCAAACCCCATTGTCAACTTTTCTGGTGTTTTTGGAAACAGTACTCTTGCTTTGGGTACTGACCTCTCATTTGACACTGCTTCTGGAAACTTCACCAAATGCAATGCTGGGCTGAGCTTTACTAATGATGATCTCATTGCATCTGTGAATGTGAACGAC

Coding sequence (CDS)

GTTGATGAACCTGCCCCTGGCTTGAAGGCTATTTTTAGTTTCCGTGTTCCTGATCAGAGATCTGGCAAGGTTGAGCTTCAGTATTTGCATGAGTATGCTGGCATCAGCACAAGCCTTGGTTTGACAGCAAACCCCATTGTCAACTTTTCTGGTGTTTTTGGAAACAGTACTCTTGCTTTGGGTACTGACCTCTCATTTGACACTGCTTCTGGAAACTTCACCAAATGCAATGCTGGGCTGAGCTTTACTAATGATGATCTCATTGCATCTGTGAATGTGAACGAC

Protein sequence

VDEPAPGLKAIFSFRVPDQRSGKVELQYLHEYAGISTSLGLTANPIVNFSGVFGNSTLALGTDLSFDTASGNFTKCNAGLSFTNDDLIASVNVND

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo10450.1	Spo10450.1	mRNA

Homology

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BLAST of Spo10450.1 vs. NCBI nr
Match: gi|1256259|gb|AAA96275.1| (voltage-dependent anion channel protein [Spinacia oleracea])

HSP 1 Score: 189.9 bits (481), Expect = 2.100e-45
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 1


		  
Query: 1   VDEPAPGLKAIFSFRVPDQRSGKVELQYLHEYAGISTSLGLTANPIVNFSGVFGNSTLAL 60
           VDEPAPGLKAIFSFRVPDQRSGKVELQYLHEYAGISTSLGLTANPIVNFSGVFGNSTLAL
Sbjct: 83  VDEPAPGLKAIFSFRVPDQRSGKVELQYLHEYAGISTSLGLTANPIVNFSGVFGNSTLAL 142

Query: 61  GTDLSFDTASGNFTKCNAGLSFTNDDLIASVNVND 96
           GTDLSFDTASGNFTKCNAGLSFTNDDLIASVNVND
Sbjct: 143 GTDLSFDTASGNFTKCNAGLSFTNDDLIASVNVND 177

[Close]

BLAST of Spo10450.1 vs. NCBI nr
Match: gi|731344143|ref|XP_010683253.1| (PREDICTED: mitochondrial outer membrane protein porin of 36 kDa [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 182.6 bits (462), Expect = 3.300e-43
Identity = 91/95 (95.79%), Postives = 93/95 (97.89%), Query Frame = 1


		  
Query: 1   VDEPAPGLKAIFSFRVPDQRSGKVELQYLHEYAGISTSLGLTANPIVNFSGVFGNSTLAL 60
           VDEPAPGLKAIFSFRVPDQRSGKVELQYLHEYAGISTSLGLTANPIVNFSGV GNSTLAL
Sbjct: 83  VDEPAPGLKAIFSFRVPDQRSGKVELQYLHEYAGISTSLGLTANPIVNFSGVIGNSTLAL 142

Query: 61  GTDLSFDTASGNFTKCNAGLSFTNDDLIASVNVND 96
           GTDLSFDTASGNFTKCNAGL+FTN DLIAS+NVND
Sbjct: 143 GTDLSFDTASGNFTKCNAGLNFTNTDLIASLNVND 177

[Close]

BLAST of Spo10450.1 vs. NCBI nr
Match: gi|702421950|ref|XP_010066951.1| (PREDICTED: mitochondrial outer membrane protein porin of 36 kDa [Eucalyptus grandis])

HSP 1 Score: 169.1 bits (427), Expect = 3.800e-39
Identity = 84/95 (88.42%), Postives = 88/95 (92.63%), Query Frame = 1


		  
Query: 1   VDEPAPGLKAIFSFRVPDQRSGKVELQYLHEYAGISTSLGLTANPIVNFSGVFGNSTLAL 60
           VDEPAPGLK IFSF VPDQRSGKVELQY HEYAGISTS+GLTANPIVNFSGV GN+ LAL
Sbjct: 83  VDEPAPGLKTIFSFIVPDQRSGKVELQYQHEYAGISTSIGLTANPIVNFSGVVGNNLLAL 142

Query: 61  GTDLSFDTASGNFTKCNAGLSFTNDDLIASVNVND 96
           GTDLSFDTASGNFTKCNAGLSFTN DLIAS+ +ND
Sbjct: 143 GTDLSFDTASGNFTKCNAGLSFTNSDLIASLTLND 177

[Close]

BLAST of Spo10450.1 vs. NCBI nr
Match: gi|743932986|ref|XP_011010796.1| (PREDICTED: mitochondrial outer membrane protein porin of 36 kDa [Populus euphratica])

HSP 1 Score: 167.9 bits (424), Expect = 8.400e-39
Identity = 82/95 (86.32%), Postives = 89/95 (93.68%), Query Frame = 1


		  
Query: 1   VDEPAPGLKAIFSFRVPDQRSGKVELQYLHEYAGISTSLGLTANPIVNFSGVFGNSTLAL 60
           VDEPAPGLK IFSF+VPDQRSGKVELQY HEYAGISTSLGLTANPIVNFSGV G++ +AL
Sbjct: 83  VDEPAPGLKTIFSFKVPDQRSGKVELQYQHEYAGISTSLGLTANPIVNFSGVVGSNVVAL 142

Query: 61  GTDLSFDTASGNFTKCNAGLSFTNDDLIASVNVND 96
           GTDLSFDTA+GNFTKCNAGLS+TN DLIAS+ VND
Sbjct: 143 GTDLSFDTATGNFTKCNAGLSYTNSDLIASLTVND 177

[Close]

BLAST of Spo10450.1 vs. NCBI nr
Match: gi|566188985|ref|XP_006378154.1| (porin family protein [Populus trichocarpa])

HSP 1 Score: 167.5 bits (423), Expect = 1.100e-38
Identity = 81/95 (85.26%), Postives = 89/95 (93.68%), Query Frame = 1


		  
Query: 1   VDEPAPGLKAIFSFRVPDQRSGKVELQYLHEYAGISTSLGLTANPIVNFSGVFGNSTLAL 60
           +DEPAPGLK IFSF+VPDQRSGKVELQY HEYAGISTSLGLTANPIVNFSGV G++ +AL
Sbjct: 83  IDEPAPGLKTIFSFKVPDQRSGKVELQYQHEYAGISTSLGLTANPIVNFSGVVGSNVVAL 142

Query: 61  GTDLSFDTASGNFTKCNAGLSFTNDDLIASVNVND 96
           GTDLSFDTA+GNFTKCNAGLS+TN DLIAS+ VND
Sbjct: 143 GTDLSFDTATGNFTKCNAGLSYTNSDLIASLTVND 177

[Close]

BLAST of Spo10450.1 vs. UniProtKB/TrEMBL
Match: Q41368_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SVDAC1 PE=2 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 1.400e-45
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 1


		  
Query: 1   VDEPAPGLKAIFSFRVPDQRSGKVELQYLHEYAGISTSLGLTANPIVNFSGVFGNSTLAL 60
           VDEPAPGLKAIFSFRVPDQRSGKVELQYLHEYAGISTSLGLTANPIVNFSGVFGNSTLAL
Sbjct: 83  VDEPAPGLKAIFSFRVPDQRSGKVELQYLHEYAGISTSLGLTANPIVNFSGVFGNSTLAL 142

Query: 61  GTDLSFDTASGNFTKCNAGLSFTNDDLIASVNVND 96
           GTDLSFDTASGNFTKCNAGLSFTNDDLIASVNVND
Sbjct: 143 GTDLSFDTASGNFTKCNAGLSFTNDDLIASVNVND 177

[Close]

BLAST of Spo10450.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C4I7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g154570 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 2.300e-43
Identity = 91/95 (95.79%), Postives = 93/95 (97.89%), Query Frame = 1


		  
Query: 1   VDEPAPGLKAIFSFRVPDQRSGKVELQYLHEYAGISTSLGLTANPIVNFSGVFGNSTLAL 60
           VDEPAPGLKAIFSFRVPDQRSGKVELQYLHEYAGISTSLGLTANPIVNFSGV GNSTLAL
Sbjct: 83  VDEPAPGLKAIFSFRVPDQRSGKVELQYLHEYAGISTSLGLTANPIVNFSGVIGNSTLAL 142

Query: 61  GTDLSFDTASGNFTKCNAGLSFTNDDLIASVNVND 96
           GTDLSFDTASGNFTKCNAGL+FTN DLIAS+NVND
Sbjct: 143 GTDLSFDTASGNFTKCNAGLNFTNTDLIASLNVND 177

[Close]

BLAST of Spo10450.1 vs. UniProtKB/TrEMBL
Match: A0A059BGL5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G02544 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 2.600e-39
Identity = 84/95 (88.42%), Postives = 88/95 (92.63%), Query Frame = 1


		  
Query: 1   VDEPAPGLKAIFSFRVPDQRSGKVELQYLHEYAGISTSLGLTANPIVNFSGVFGNSTLAL 60
           VDEPAPGLK IFSF VPDQRSGKVELQY HEYAGISTS+GLTANPIVNFSGV GN+ LAL
Sbjct: 83  VDEPAPGLKTIFSFIVPDQRSGKVELQYQHEYAGISTSIGLTANPIVNFSGVVGNNLLAL 142

Query: 61  GTDLSFDTASGNFTKCNAGLSFTNDDLIASVNVND 96
           GTDLSFDTASGNFTKCNAGLSFTN DLIAS+ +ND
Sbjct: 143 GTDLSFDTASGNFTKCNAGLSFTNSDLIASLTLND 177

[Close]

BLAST of Spo10450.1 vs. UniProtKB/TrEMBL
Match: A9P802_POPTR (Porin family protein OS=Populus trichocarpa GN=POPTR_0010s04240g PE=2 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 7.600e-39
Identity = 81/95 (85.26%), Postives = 89/95 (93.68%), Query Frame = 1


		  
Query: 1   VDEPAPGLKAIFSFRVPDQRSGKVELQYLHEYAGISTSLGLTANPIVNFSGVFGNSTLAL 60
           +DEPAPGLK IFSF+VPDQRSGKVELQY HEYAGISTSLGLTANPIVNFSGV G++ +AL
Sbjct: 83  IDEPAPGLKTIFSFKVPDQRSGKVELQYQHEYAGISTSLGLTANPIVNFSGVVGSNVVAL 142

Query: 61  GTDLSFDTASGNFTKCNAGLSFTNDDLIASVNVND 96
           GTDLSFDTA+GNFTKCNAGLS+TN DLIAS+ VND
Sbjct: 143 GTDLSFDTATGNFTKCNAGLSYTNSDLIASLTVND 177

[Close]

BLAST of Spo10450.1 vs. UniProtKB/TrEMBL
Match: F6HPF2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0026g01650 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 2.200e-38
Identity = 80/95 (84.21%), Postives = 89/95 (93.68%), Query Frame = 1


		  
Query: 1   VDEPAPGLKAIFSFRVPDQRSGKVELQYLHEYAGISTSLGLTANPIVNFSGVFGNSTLAL 60
           VDEPAPGLK IFSF +PDQRSGKVELQYLHEYAGISTS+GLTANPIVNFSGV GN+TL+L
Sbjct: 83  VDEPAPGLKTIFSFIIPDQRSGKVELQYLHEYAGISTSIGLTANPIVNFSGVVGNNTLSL 142

Query: 61  GTDLSFDTASGNFTKCNAGLSFTNDDLIASVNVND 96
           GTDLSFDTA+GNFTKCNAGL F+N DLIA++ +ND
Sbjct: 143 GTDLSFDTATGNFTKCNAGLGFSNADLIAALTLND 177

[Close]

BLAST of Spo10450.1 vs. ExPASy Swiss-Prot
Match: VDAC2_SOLTU (Mitochondrial outer membrane protein porin of 36 kDa OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 161.8 bits (408), Expect = 3.800e-39
Identity = 78/95 (82.11%), Postives = 90/95 (94.74%), Query Frame = 1


		  
Query: 1   VDEPAPGLKAIFSFRVPDQRSGKVELQYLHEYAGISTSLGLTANPIVNFSGVFGNSTLAL 60
           VDEPAPGLK IFSF VPDQ+SGKVELQYLHEYAGI+TS+GLTA+P+VNFSGV GN+T+AL
Sbjct: 83  VDEPAPGLKTIFSFVVPDQKSGKVELQYLHEYAGINTSIGLTASPLVNFSGVAGNNTVAL 142

Query: 61  GTDLSFDTASGNFTKCNAGLSFTNDDLIASVNVND 96
           GTDLSFDTA+GNFTKCNAGLSF++ DLIAS+ +ND
Sbjct: 143 GTDLSFDTATGNFTKCNAGLSFSSSDLIASLALND 177

[Close]

BLAST of Spo10450.1 vs. ExPASy Swiss-Prot
Match: VDAC1_ARATH (Mitochondrial outer membrane protein porin 1 OS=Arabidopsis thaliana GN=VDAC1 PE=1 SV=3)

HSP 1 Score: 154.1 bits (388), Expect = 7.800e-37
Identity = 75/95 (78.95%), Postives = 85/95 (89.47%), Query Frame = 1


		  
Query: 1   VDEPAPGLKAIFSFRVPDQRSGKVELQYLHEYAGISTSLGLTANPIVNFSGVFGNSTLAL 60
           VDE APGL++IFSF+VPDQ SGKVELQYLHEYAGISTS+GLT NP VNFSGV G++ LA+
Sbjct: 83  VDEAAPGLRSIFSFKVPDQNSGKVELQYLHEYAGISTSMGLTQNPTVNFSGVIGSNVLAV 142

Query: 61  GTDLSFDTASGNFTKCNAGLSFTNDDLIASVNVND 96
           GTD+SFDT SGNFTK NAGLSFT +DLIAS+ VND
Sbjct: 143 GTDVSFDTKSGNFTKINAGLSFTKEDLIASLTVND 177

[Close]

BLAST of Spo10450.1 vs. ExPASy Swiss-Prot
Match: VDAC1_SOLTU (Mitochondrial outer membrane protein porin of 34 kDa OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 153.3 bits (386), Expect = 1.300e-36
Identity = 73/95 (76.84%), Postives = 86/95 (90.53%), Query Frame = 1


		  
Query: 1   VDEPAPGLKAIFSFRVPDQRSGKVELQYLHEYAGISTSLGLTANPIVNFSGVFGNSTLAL 60
           VDE APGLK I SFRVPDQRSGK+E+QYLH+YAGI TS+GLTANPIVNFSGV G + +AL
Sbjct: 83  VDEAAPGLKTILSFRVPDQRSGKLEVQYLHDYAGICTSVGLTANPIVNFSGVVGTNIIAL 142

Query: 61  GTDLSFDTASGNFTKCNAGLSFTNDDLIASVNVND 96
           GTD+SFDT +G+FTKCNAGLSFTN DL+AS+N+N+
Sbjct: 143 GTDVSFDTKTGDFTKCNAGLSFTNADLVASLNLNN 177

[Close]

BLAST of Spo10450.1 vs. ExPASy Swiss-Prot
Match: VDAC1_ORYSJ (Mitochondrial outer membrane protein porin 1 OS=Oryza sativa subsp. japonica GN=VDAC1 PE=1 SV=3)

HSP 1 Score: 137.5 bits (345), Expect = 7.600e-32
Identity = 66/95 (69.47%), Postives = 79/95 (83.16%), Query Frame = 1


		  
Query: 1   VDEPAPGLKAIFSFRVPDQRSGKVELQYLHEYAGISTSLGLTANPIVNFSGVFGNSTLAL 60
           VDE  PGLK+I SF VPDQRSGK ELQY H+YAG+S S+GLTA+P+VN S VFG   LA+
Sbjct: 82  VDELTPGLKSILSFAVPDQRSGKFELQYSHDYAGVSASIGLTASPVVNLSSVFGTKALAV 141

Query: 61  GTDLSFDTASGNFTKCNAGLSFTNDDLIASVNVND 96
           G D+S DTA+GN TK NAGLSF+NDDLIAS+N+N+
Sbjct: 142 GADVSLDTATGNLTKYNAGLSFSNDDLIASLNLNN 176

[Close]

BLAST of Spo10450.1 vs. ExPASy Swiss-Prot
Match: VDAC1_WHEAT (Mitochondrial outer membrane porin OS=Triticum aestivum GN=VDAC1 PE=2 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 8.400e-31
Identity = 65/94 (69.15%), Postives = 77/94 (81.91%), Query Frame = 1


		  
Query: 2   DEPAPGLKAIFSFRVPDQRSGKVELQYLHEYAGISTSLGLTANPIVNFSGVFGNSTLALG 61
           D  APGLK I SF VPDQ+SGKVELQYLH+YAGI+ S+GLTANP+VN SG FG S LA+G
Sbjct: 84  DLAAPGLKTILSFAVPDQKSGKVELQYLHDYAGINASIGLTANPVVNLSGAFGTSALAVG 143

Query: 62  TDLSFDTASGNFTKCNAGLSFTNDDLIASVNVND 96
            D+S DTA+ NF K NA LS+TN DLIAS+N+N+
Sbjct: 144 ADVSLDTATKNFAKYNAALSYTNQDLIASLNLNN 177

[Close]

BLAST of Spo10450.1 vs. TAIR (Arabidopsis)
Match: AT3G01280.1 (voltage dependent anion channel 1)

HSP 1 Score: 154.1 bits (388), Expect = 4.400e-38
Identity = 75/95 (78.95%), Postives = 85/95 (89.47%), Query Frame = 1


		  
Query: 1   VDEPAPGLKAIFSFRVPDQRSGKVELQYLHEYAGISTSLGLTANPIVNFSGVFGNSTLAL 60
           VDE APGL++IFSF+VPDQ SGKVELQYLHEYAGISTS+GLT NP VNFSGV G++ LA+
Sbjct: 83  VDEAAPGLRSIFSFKVPDQNSGKVELQYLHEYAGISTSMGLTQNPTVNFSGVIGSNVLAV 142

Query: 61  GTDLSFDTASGNFTKCNAGLSFTNDDLIASVNVND 96
           GTD+SFDT SGNFTK NAGLSFT +DLIAS+ VND
Sbjct: 143 GTDVSFDTKSGNFTKINAGLSFTKEDLIASLTVND 177

[Close]

BLAST of Spo10450.1 vs. TAIR (Arabidopsis)
Match: AT5G15090.1 (voltage dependent anion channel 3)

HSP 1 Score: 124.4 bits (311), Expect = 3.700e-29
Identity = 59/94 (62.77%), Postives = 74/94 (78.72%), Query Frame = 1


		  
Query: 2   DEPAPGLKAIFSFRVPDQRSGKVELQYLHEYAGISTSLGLTANPIVNFSGVFGNSTLALG 61
           DEPAPGLK I   ++PD +SGK E+QY H+YAGISTS+G TA PIVNFSGV G + L+LG
Sbjct: 84  DEPAPGLKVIVQAKLPDHKSGKAEVQYFHDYAGISTSVGFTATPIVNFSGVVGTNGLSLG 143

Query: 62  TDLSFDTASGNFTKCNAGLSFTNDDLIASVNVND 96
           TD++++T SGNF   NAG +FT DDL AS+ +ND
Sbjct: 144 TDVAYNTESGNFKHFNAGFNFTKDDLTASLILND 177

[Close]

BLAST of Spo10450.1 vs. TAIR (Arabidopsis)
Match: AT5G57490.1 (voltage dependent anion channel 4)

HSP 1 Score: 87.0 bits (214), Expect = 6.600e-18
Identity = 37/90 (41.11%), Postives = 63/90 (70.00%), Query Frame = 1


		  
Query: 6   PGLKAIFSFRVPDQRSGKVELQYLHEYAGISTSLGLTANPIVNFSGVFGNSTLALGTDLS 65
           P  KA+ SF++PD +SGK+++QY+H +A +++S+GL   P+++ S   G+  + LG ++S
Sbjct: 88  PSAKAVISFKIPDHKSGKLDVQYVHPHATLNSSIGLNPTPLLDLSATIGSQNVCLGGEVS 147

Query: 66  FDTASGNFTKCNAGLSFTNDDLIASVNVND 96
           FDTAS + TK NAG+ F N  + A++ + D
Sbjct: 148 FDTASSSLTKYNAGIGFNNQGVSAALILED 177

[Close]

BLAST of Spo10450.1 vs. TAIR (Arabidopsis)
Match: AT5G67500.2 (voltage dependent anion channel 2)

HSP 1 Score: 79.0 bits (193), Expect = 1.800e-15
Identity = 36/93 (38.71%), Postives = 56/93 (60.22%), Query Frame = 1


		  
Query: 3   EPAPGLKAIFSFRVPDQRSGKVELQYLHEYAGISTSLGLTANPIVNFSGVFGNSTLALGT 62
           E  P  KAI SF+VPD  S K+E+QY H++A ++ +  L  NP+++ +   G+  ++ G 
Sbjct: 112 EILPSTKAIASFKVPDYNSAKLEVQYFHDHATVTAAAALKQNPLIDITATLGSPVISFGA 171

Query: 63  DLSFDTASGNFTKCNAGLSFTNDDLIASVNVND 96
           +  +DT S  FTK NAG+S T  D   S+ + D
Sbjct: 172 EAGYDTTSKTFTKYNAGISVTKPDACLSIILGD 204

[Close]

BLAST of Spo10450.1 vs. TAIR (Arabidopsis)
Match: AT5G37610.1 (Eukaryotic porin family protein)

HSP 1 Score: 47.8 bits (112), Expect = 4.500e-6
Identity = 27/66 (40.91%), Postives = 38/66 (57.58%), Query Frame = 1


		  
Query: 29 LHEYAGISTSLGLTANPIVNFSGVFGNSTLALGTDLSFDTASGNFTKCNAGLSFTNDDLI 88
          L E A IST +GL ANPI++FS VFGN     G +L+ D  +   TK N  LS   +D  
Sbjct: 2  LSERARISTIVGLFANPILSFSAVFGNDFWRFGFELTLDLVNRIITKANTVLSLITEDTT 61

Query: 89 ASVNVN 95
           + +++
Sbjct: 62 TTFSID 67

The following BLAST results are available for this feature:

BLAST of Spo10450.1 vs. NCBI nr
BLAST of Spo10450.1 vs. UniProtKB/TrEMBL
BLAST of Spo10450.1 vs. ExPASy Swiss-Prot
BLAST of Spo10450.1 vs. TAIR (Arabidopsis)

BLAST of Spo10450.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|1256259\|gb\|AAA96275.1\|	2.1e-45	100.	voltage-dependent anion channe...	[more]
gi\|731344143\|ref\|XP_010683253.1\|	3.3e-43	95.7	PREDICTED: mitochondrial outer...	[more]
gi\|702421950\|ref\|XP_010066951.1\|	3.8e-39	88.4	PREDICTED: mitochondrial outer...	[more]
gi\|743932986\|ref\|XP_011010796.1\|	8.4e-39	86.3	PREDICTED: mitochondrial outer...	[more]
gi\|566188985\|ref\|XP_006378154.1\|	1.1e-38	85.2	porin family protein [Populus ...	[more]

BLAST of Spo10450.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
Q41368_SPIOL	1.4e-45	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8C4I7_BETVU	2.3e-43	95.7	Uncharacterized protein OS=Bet...	[more]
A0A059BGL5_EUCGR	2.6e-39	88.4	Uncharacterized protein OS=Euc...	[more]
A9P802_POPTR	7.6e-39	85.2	Porin family protein OS=Populu...	[more]
F6HPF2_VITVI	2.2e-38	84.2	Putative uncharacterized prote...	[more]

BLAST of Spo10450.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
VDAC2_SOLTU	3.8e-39	82.1	Mitochondrial outer membrane p...	[more]
VDAC1_ARATH	7.8e-37	78.9	Mitochondrial outer membrane p...	[more]
VDAC1_SOLTU	1.3e-36	76.8	Mitochondrial outer membrane p...	[more]
VDAC1_ORYSJ	7.6e-32	69.4	Mitochondrial outer membrane p...	[more]
VDAC1_WHEAT	8.4e-31	69.1	Mitochondrial outer membrane p...	[more]

BLAST of Spo10450.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5


Match Name	E-value	Identity	Description
AT3G01280.1	4.4e-38	78.9	voltage dependent anion channe...	[more]
AT5G15090.1	3.7e-29	62.7	voltage dependent anion channe...	[more]
AT5G57490.1	6.6e-18	41.1	voltage dependent anion channe...	[more]
AT5G67500.2	1.8e-15	38.7	voltage dependent anion channe...	[more]
AT5G37610.1	4.5e-6	40.9	Eukaryotic porin family protei...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023614	Porin domain	GENE3D	2.40.160.10		coord: 2..95 score: 9.7
IPR027246	Eukaryotic porin/Tom40	PFAM	PF01459	Porin_3	coord: 4..94 score: 1.4
None	No IPR available	PANTHER	PTHR11743	VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL	coord: 1..95 score: 8.6
None	No IPR available	PANTHER	PTHR11743:SF31	SUBFAMILY NOT NAMED	coord: 1..95 score: 8.6

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044070	regulation of anion transport
biological_process	GO:0061647	histone H3-K9 modification
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
biological_process	GO:0010182	sugar mediated signaling pathway
biological_process	GO:0015991	ATP hydrolysis coupled proton transport
biological_process	GO:0015986	ATP synthesis coupled proton transport
biological_process	GO:0007062	sister chromatid cohesion
biological_process	GO:0048575	short-day photoperiodism, flowering
biological_process	GO:0030001	metal ion transport
biological_process	GO:0009845	seed germination
biological_process	GO:0010162	seed dormancy process
biological_process	GO:0050826	response to freezing
biological_process	GO:0006810	transport
biological_process	GO:0009909	regulation of flower development
biological_process	GO:0045595	regulation of cell differentiation
biological_process	GO:0070932	histone H3 deacetylation
biological_process	GO:0070933	histone H4 deacetylation
biological_process	GO:0000278	mitotic cell cycle
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0055085	transmembrane transport
biological_process	GO:0010564	regulation of cell cycle process
biological_process	GO:0000209	protein polyubiquitination
biological_process	GO:0010072	primary shoot apical meristem specification
biological_process	GO:0010100	negative regulation of photomorphogenesis
biological_process	GO:0035194	posttranscriptional gene silencing by RNA
biological_process	GO:0006396	RNA processing
biological_process	GO:0007049	cell cycle
biological_process	GO:0051301	cell division
biological_process	GO:0009738	abscisic acid-activated signaling pathway
biological_process	GO:0048825	cotyledon development
biological_process	GO:0006281	DNA repair
biological_process	GO:0009880	embryonic pattern specification
biological_process	GO:0008152	metabolic process
biological_process	GO:0019915	lipid storage
biological_process	GO:0006121	mitochondrial electron transport, succinate to ubiquinone
biological_process	GO:0048869	cellular developmental process
biological_process	GO:0006448	regulation of translational elongation
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0006888	ER to Golgi vesicle-mediated transport
biological_process	GO:0001510	RNA methylation
biological_process	GO:0006446	regulation of translational initiation
biological_process	GO:0019643	reductive tricarboxylic acid cycle
biological_process	GO:0006090	pyruvate metabolic process
biological_process	GO:0006108	malate metabolic process
biological_process	GO:0009058	biosynthetic process
biological_process	GO:0016043	cellular component organization
biological_process	GO:0016049	cell growth
biological_process	GO:0060560	developmental growth involved in morphogenesis
biological_process	GO:0044238	primary metabolic process
biological_process	GO:0010817	regulation of hormone levels
biological_process	GO:0010015	root morphogenesis
biological_process	GO:0006334	nucleosome assembly
biological_process	GO:0046487	glyoxylate metabolic process
biological_process	GO:0044262	cellular carbohydrate metabolic process
biological_process	GO:1901576	organic substance biosynthetic process
biological_process	GO:0006099	tricarboxylic acid cycle
biological_process	GO:0019243	methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione
biological_process	GO:0006508	proteolysis
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0019013	viral nucleocapsid
cellular_component	GO:1990904	ribonucleoprotein complex
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0030127	COPII vesicle coat
cellular_component	GO:0045281	succinate dehydrogenase complex
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0080008	Cul4-RING E3 ubiquitin ligase complex
cellular_component	GO:0005829	cytosol
cellular_component	GO:0000118	histone deacetylase complex
cellular_component	GO:0000275	mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)
cellular_component	GO:0005741	mitochondrial outer membrane
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
cellular_component	GO:0009840	chloroplastic endopeptidase Clp complex
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0004386	helicase activity
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity
molecular_function	GO:0046970	NAD-dependent histone deacetylase activity (H4-K16 specific)
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0030060	L-malate dehydrogenase activity
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0003746	translation elongation factor activity
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0008308	voltage-gated anion channel activity
molecular_function	GO:0008177	succinate dehydrogenase (ubiquinone) activity
molecular_function	GO:0051537	2 iron, 2 sulfur cluster binding
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding
molecular_function	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism
molecular_function	GO:0097372	NAD-dependent histone deacetylase activity (H3-K18 specific)
molecular_function	GO:0032041	NAD-dependent histone deacetylase activity (H3-K14 specific)
molecular_function	GO:0005215	transporter activity
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0051538	3 iron, 4 sulfur cluster binding
molecular_function	GO:0004045	aminoacyl-tRNA hydrolase activity
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0004252	serine-type endopeptidase activity
molecular_function	GO:0031625	ubiquitin protein ligase binding
molecular_function	GO:0050897	cobalt ion binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046969	NAD-dependent histone deacetylase activity (H3-K9 specific)
molecular_function	GO:0017069	snRNA binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo13877	0.98	Barchart \| Table
Spo25733	0.86	Barchart \| Table
Spo18143	0.82	Barchart \| Table
Spo24936	0.80	Barchart \| Table
Spo05415	0.80	Barchart \| Table
Spo00444	0.79	Barchart \| Table
Spo06341	0.77	Barchart \| Table
Spo15092	0.77	Barchart \| Table
Spo06711	0.77	Barchart \| Table
Spo03008	0.77	Barchart \| Table
Spo06277	0.76	Barchart \| Table
Spo11164	0.76	Barchart \| Table
Spo24937	0.76	Barchart \| Table
Spo21476	0.75	Barchart \| Table
Spo24213	0.75	Barchart \| Table
Spo06380	0.75	Barchart \| Table
Spo03714	0.74	Barchart \| Table
Spo08198	0.73	Barchart \| Table
Spo21472	0.73	Barchart \| Table
Spo17836	0.73	Barchart \| Table
Spo01183	0.73	Barchart \| Table
Spo21406	0.72	Barchart \| Table
Spo16378	0.72	Barchart \| Table
Spo24916	0.72	Barchart \| Table
Spo24128	0.72	Barchart \| Table
Spo02105	0.72	Barchart \| Table
Spo28041	0.71	Barchart \| Table
Spo03007	0.71	Barchart \| Table
Spo07448	0.71	Barchart \| Table
Spo13789	0.71	Barchart \| Table
Spo17039	0.71	Barchart \| Table
Spo23067	0.71	Barchart \| Table
Spo25100	0.71	Barchart \| Table
Spo25346	0.71	Barchart \| Table
Spo25507	0.70	Barchart \| Table
Spo05184	0.70	Barchart \| Table
Spo20235	0.70	Barchart \| Table
Spo12084	0.69	Barchart \| Table
Spo06497	0.69	Barchart \| Table
Spo10211	0.69	Barchart \| Table
Spo02993	0.69	Barchart \| Table
Spo03006	0.69	Barchart \| Table
Spo24416	0.69	Barchart \| Table
Spo22586	0.69	Barchart \| Table
Spo19664	0.69	Barchart \| Table
Spo09633	0.69	Barchart \| Table
Spo13487	0.68	Barchart \| Table
Spo14513	0.68	Barchart \| Table
Spo24225	0.68	Barchart \| Table
Spo02609	0.68	Barchart \| Table
Spo25175	0.68	Barchart \| Table
Spo05232	0.67	Barchart \| Table
Spo23092	0.67	Barchart \| Table
Spo01128	0.67	Barchart \| Table
Spo05250	0.67	Barchart \| Table
Spo19231	0.67	Barchart \| Table
Spo06097	0.66	Barchart \| Table
Spo21477	0.66	Barchart \| Table
Spo25779	0.66	Barchart \| Table
Spo13818	0.66	Barchart \| Table
Spo10300	0.66	Barchart \| Table
Spo01478	0.66	Barchart \| Table
Spo19658	0.66	Barchart \| Table
Spo21203	0.66	Barchart \| Table
Spo18220	0.66	Barchart \| Table
Spo06101	0.66	Barchart \| Table
Spo06391	0.66	Barchart \| Table
Spo07916	0.66	Barchart \| Table
Spo26206	0.66	Barchart \| Table
Spo24190	0.65	Barchart \| Table
Spo04959	0.65	Barchart \| Table
Spo11682	0.65	Barchart \| Table
Spo18801	0.65	Barchart \| Table
Spo22139	0.65	Barchart \| Table