Spo17244 (gene) | SpinachBase

Overview


Name	Spo17244
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	At3G54630-like protein
Location	SpoScf_50938 : 42 .. 551 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGACCAAGAGGCGGAGCAACACGAGCTTCGGCAACTGATCGGGAATCCCTCCGCCCACCGTCAACACCTCAATTCGGCGGTGGAGGTGTTCGCCGCGATTCCGATGCCAGTGTCTGCAGCGGCCGACCTTCATCTTCCTCCTTCGGTCTCGCCGCCACCGGCAGACCACCCAATGACAAACAAGCAATGCTGCGATCCATCAACGCTTACCTCACTTCTCACGGCGTCTCACTTTCTCTCTCCTTCAAACCGCTGCCCTCCGCTAAAGACGTCACCGAAGTGTTGCGGTTTCTCCTCTCTCGCTTCGAGTTCCCCTGCAACAAGAAGAGCCTTGATGATGATCTATTTCTGCTCCTGAAATATCTGAGTTGCCCTTATAAGATAAACAAGTCTGCGCTTCGTGCCCCTGCTGCTCCTCACGCGTTTCCACAGATGCTTGCTGTTATTCATTGGCTTGTTCAGCTTGCTTATTATGCTGATCATATCGCTTCCGATGAGAACACCGGC

mRNA sequence

ATGAGACCAAGAGGCGGAGCAACACGAGCTTCGGCAACTGATCGGGAATCCCTCCGCCCACCGTCAACACCTCAATTCGGCGGTGGAGGTGTTCGCCGCGATTCCGATGCCAGTGTCTGCAGCGGCCGACCTTCATCTTCCTCCTTCGGTCTCGCCGCCACCGGCAGACCACCCAATGACAAACAAGCAATGCTGCGATCCATCAACGCTTACCTCACTTCTCACGGCGTCTCACTTTCTCTCTCCTTCAAACCGCTGCCCTCCGCTAAAGACGTCACCGAAGTGTTGCGGTTTCTCCTCTCTCGCTTCGAGTTCCCCTGCAACAAGAAGAGCCTTGATGATGATCTATTTCTGCTCCTGAAATATCTGAGTTGCCCTTATAAGATAAACAAGTCTGCGCTTCGTGCCCCTGCTGCTCCTCACGCGTTTCCACAGATGCTTGCTGTTATTCATTGGCTTGTTCAGCTTGCTTATTATGCTGATCATATCGCTTCCGATGAGAACACCGGC

Coding sequence (CDS)

ATGAGACCAAGAGGCGGAGCAACACGAGCTTCGGCAACTGATCGGGAATCCCTCCGCCCACCGTCAACACCTCAATTCGGCGGTGGAGGTGTTCGCCGCGATTCCGATGCCAGTGTCTGCAGCGGCCGACCTTCATCTTCCTCCTTCGGTCTCGCCGCCACCGGCAGACCACCCAATGACAAACAAGCAATGCTGCGATCCATCAACGCTTACCTCACTTCTCACGGCGTCTCACTTTCTCTCTCCTTCAAACCGCTGCCCTCCGCTAAAGACGTCACCGAAGTGTTGCGGTTTCTCCTCTCTCGCTTCGAGTTCCCCTGCAACAAGAAGAGCCTTGATGATGATCTATTTCTGCTCCTGAAATATCTGAGTTGCCCTTATAAGATAAACAAGTCTGCGCTTCGTGCCCCTGCTGCTCCTCACGCGTTTCCACAGATGCTTGCTGTTATTCATTGGCTTGTTCAGCTTGCTTATTATGCTGATCATATCGCTTCCGATGAGAACACCGGC

Protein sequence

MRPRGGATRASATDRESLRPPSTPQFGGGGVRRDSDASVCSGRPSSSSFGLAATGRPPNDKQAMLRSINAYLTSHGVSLSLSFKPLPSAKDVTEVLRFLLSRFEFPCNKKSLDDDLFLLLKYLSCPYKINKSALRAPAAPHAFPQMLAVIHWLVQLAYYADHIASDENTG

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo17244.1	Spo17244.1	mRNA

Homology

[Close]

BLAST of Spo17244.1 vs. NCBI nr
Match: gi|902191596|gb|KNA11883.1| (hypothetical protein SOVF_131010 [Spinacia oleracea])

HSP 1 Score: 340.5 bits (872), Expect = 1.700e-90
Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 1

		  
Query: 1   MRPRGGATRASATDRESLRPPSTPQFGGGGVRRDSDASVCSGRPSSSSFGLAATGRPPND 60
           MRPRGGATRASATDRESLRPPSTPQFGGGGVRRDSDASVCSGRPSSSSFGLAATGRPPND
Sbjct: 1   MRPRGGATRASATDRESLRPPSTPQFGGGGVRRDSDASVCSGRPSSSSFGLAATGRPPND 60

Query: 61  KQAMLRSINAYLTSHGVSLSLSFKPLPSAKDVTEVLRFLLSRFEFPCNKKSLDDDLFLLL 120
           KQAMLRSINAYLTSHGVSLSLSFKPLPSAKDVTEVLRFLLSRFEFPCNKKSLDDDLFLLL
Sbjct: 61  KQAMLRSINAYLTSHGVSLSLSFKPLPSAKDVTEVLRFLLSRFEFPCNKKSLDDDLFLLL 120

Query: 121 KYLSCPYKINKSALRAPAAPHAFPQMLAVIHWLVQLAYYADHIASDENTG 171
           KYLSCPYKINKSALRAPAAPHAFPQMLAVIHWLVQLAYYADHIASDENTG
Sbjct: 121 KYLSCPYKINKSALRAPAAPHAFPQMLAVIHWLVQLAYYADHIASDENTG 170

[Close]

BLAST of Spo17244.1 vs. NCBI nr
Match: gi|731319046|ref|XP_010670048.1| (PREDICTED: probable kinetochore protein NDC80 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 230.7 bits (587), Expect = 1.900e-57
Identity = 126/181 (69.61%), Postives = 143/181 (79.01%), Query Frame = 1

		  
Query: 1   MRPRGGATRASATDRESLRPP--STPQFGGGGVRRDSDASVCSGRPSSSSFGLAAT--GR 60
           M+PRG A+R  +T+RESLRPP  STPQFG     RDSDAS+CS RPSSSSFGL  T   R
Sbjct: 1   MKPRGAASRLQSTERESLRPPPPSTPQFG-----RDSDASLCSSRPSSSSFGLTTTTNSR 60

Query: 61  PPNDKQAMLRSINAYLTSHGVSLSLSFKPLPSAKDVTEVLRFLLSRFEFPCNKK------ 120
              DKQ+M+RSINAYL+SH +SLSLSFKPLPSAK VT++LRFLLSRF F  N        
Sbjct: 61  HHTDKQSMVRSINAYLSSHNISLSLSFKPLPSAKVVTDILRFLLSRFGFSGNSSGIKGNN 120

Query: 121 --SLDDDLFLLLKYLSCPYKINKSALRAPAAPHAFPQMLAVIHWLVQLAYYADHIASDEN 170
             SLDDDLFLLLKYL+CP+KINKSALRAPAAPHAFPQMLAVI+WLVQLA Y DH+ S++ 
Sbjct: 121 NSSLDDDLFLLLKYLNCPHKINKSALRAPAAPHAFPQMLAVIYWLVQLADYLDHLHSEDK 176

[Close]

BLAST of Spo17244.1 vs. NCBI nr
Match: gi|976916252|gb|KVI01777.1| (Kinetochore protein Ndc80 [Cynara cardunculus var. scolymus])

HSP 1 Score: 143.3 bits (360), Expect = 4.000e-31
Identity = 76/147 (51.70%), Postives = 103/147 (70.07%), Query Frame = 1

		  
Query: 27  GGGGVRRDSDASVCSGRPSSS-SFGL----AATGRPPNDKQAM---LRSINAYLTSHGVS 86
           GGGG RRDSDAS CS RPSSS S G     +AT     D+      + +IN+YL++    
Sbjct: 35  GGGGNRRDSDASFCSSRPSSSFSAGANNHRSATAVSITDRSYQSHAVSTINSYLSACSFP 94

Query: 87  LSLSFKPLPSAKDVTEVLRFLLSRFEFPCNKKSLDDDLFLLLKYLSCPYKINKSALRAPA 146
           +S   KPLPS KD+TE L+F+L+R E+P + K  +DDLF++LKY +CP K+NKSAL+AP 
Sbjct: 95  ISFKLKPLPSNKDITETLKFVLTRLEYPPSNK-FEDDLFIVLKYSNCPIKMNKSALKAPG 154

Query: 147 APHAFPQMLAVIHWLVQLAYYADHIAS 166
            PH+FP +LAV+HWLVQ+A Y +H+ +
Sbjct: 155 TPHSFPSVLAVLHWLVQIAMYNEHLVN 180

[Close]

BLAST of Spo17244.1 vs. NCBI nr
Match: gi|720093798|ref|XP_010246162.1| (PREDICTED: kinetochore protein ndc80-like [Nelumbo nucifera])

HSP 1 Score: 141.7 bits (356), Expect = 1.200e-30
Identity = 84/174 (48.28%), Postives = 109/174 (62.64%), Query Frame = 1

		  
Query: 1   MRPRGGATRASATDRESLRPPSTPQFGGGGVR-RDSDASVCSGRPSSSSFGLA-ATGRPP 60
           MR   G  R      +   P  T Q     +R RDSDAS CS RPS+SS G+  A   P 
Sbjct: 1   MRGGAGGRRRPKDSLQDRFPVDTRQLST--IRNRDSDASYCSSRPSNSSIGIGRAPAGPI 60

Query: 61  NDKQ---AMLRSINAYLTSHGVSLSLSFKPLPSAKDVTEVLRFLLSRFEFPCNKKSLDDD 120
            D+    + +R INAYL S   S  +   PLPSAKD+T+ +RF+ +R ++P  K  L++D
Sbjct: 61  TDRAHQASAIRVINAYLASQSCSTVIK-PPLPSAKDITDTIRFIFTRLDWPSFK--LEED 120

Query: 121 LFLLLKYLSCPYKINKSALRAPAAPHAFPQMLAVIHWLVQLAYYADHIASDENT 170
           L LLLKYL+CP+K+NKSAL+AP  PH++P +LAVIHWLV+ A Y DHIAS   T
Sbjct: 121 LPLLLKYLNCPFKLNKSALKAPGTPHSWPSLLAVIHWLVEFALYNDHIASSPTT 169

[Close]

BLAST of Spo17244.1 vs. NCBI nr
Match: gi|802556479|ref|XP_012065655.1| (PREDICTED: probable kinetochore protein ndc80 [Jatropha curcas])

HSP 1 Score: 141.0 bits (354), Expect = 2.000e-30
Identity = 79/165 (47.88%), Postives = 108/165 (65.45%), Query Frame = 1

		  
Query: 15  RESLRPPSTPQ-----FGG--GGVRRDSDASVCSGRPSSSSFGLAATGRPPNDK---QAM 74
           ++S  P  TP      F G  G   RDSDAS  S RPS+   G+  T     D+    + 
Sbjct: 10  KDSFIPQPTPDRRQYPFSGAAGNTSRDSDASFASSRPST--VGVGRTSELYTDRGHQNSA 69

Query: 75  LRSINAYLTSHGVSLSLSFKPLPSAKDVTEVLRFLLSRFEFPCNKKSLDDDLFLLLKYLS 134
           +RSIN +L+SH   LSL   P+ SAK++TEVL+FLL + ++P  K  LDDDLF++LK L+
Sbjct: 70  VRSINTFLSSHNSLLSLRTHPISSAKEMTEVLQFLLHQLDYP--KAKLDDDLFVILKSLN 129

Query: 135 CPYKINKSALRAPAAPHAFPQMLAVIHWLVQLAYYADHIASDENT 170
           CP+K+NKSALRAP  PH +P  LA+IHWLVQ+A YA+H+A++  +
Sbjct: 130 CPFKVNKSALRAPNTPHNWPSFLALIHWLVQIAMYAEHLAANSRS 170

[Close]

BLAST of Spo17244.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QYW0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_131010 PE=4 SV=1)

HSP 1 Score: 340.5 bits (872), Expect = 1.200e-90
Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 1

		  
Query: 1   MRPRGGATRASATDRESLRPPSTPQFGGGGVRRDSDASVCSGRPSSSSFGLAATGRPPND 60
           MRPRGGATRASATDRESLRPPSTPQFGGGGVRRDSDASVCSGRPSSSSFGLAATGRPPND
Sbjct: 1   MRPRGGATRASATDRESLRPPSTPQFGGGGVRRDSDASVCSGRPSSSSFGLAATGRPPND 60

Query: 61  KQAMLRSINAYLTSHGVSLSLSFKPLPSAKDVTEVLRFLLSRFEFPCNKKSLDDDLFLLL 120
           KQAMLRSINAYLTSHGVSLSLSFKPLPSAKDVTEVLRFLLSRFEFPCNKKSLDDDLFLLL
Sbjct: 61  KQAMLRSINAYLTSHGVSLSLSFKPLPSAKDVTEVLRFLLSRFEFPCNKKSLDDDLFLLL 120

Query: 121 KYLSCPYKINKSALRAPAAPHAFPQMLAVIHWLVQLAYYADHIASDENTG 171
           KYLSCPYKINKSALRAPAAPHAFPQMLAVIHWLVQLAYYADHIASDENTG
Sbjct: 121 KYLSCPYKINKSALRAPAAPHAFPQMLAVIHWLVQLAYYADHIASDENTG 170

[Close]

BLAST of Spo17244.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CUI7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g038700 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 1.300e-57
Identity = 126/181 (69.61%), Postives = 143/181 (79.01%), Query Frame = 1

		  
Query: 1   MRPRGGATRASATDRESLRPP--STPQFGGGGVRRDSDASVCSGRPSSSSFGLAAT--GR 60
           M+PRG A+R  +T+RESLRPP  STPQFG     RDSDAS+CS RPSSSSFGL  T   R
Sbjct: 1   MKPRGAASRLQSTERESLRPPPPSTPQFG-----RDSDASLCSSRPSSSSFGLTTTTNSR 60

Query: 61  PPNDKQAMLRSINAYLTSHGVSLSLSFKPLPSAKDVTEVLRFLLSRFEFPCNKK------ 120
              DKQ+M+RSINAYL+SH +SLSLSFKPLPSAK VT++LRFLLSRF F  N        
Sbjct: 61  HHTDKQSMVRSINAYLSSHNISLSLSFKPLPSAKVVTDILRFLLSRFGFSGNSSGIKGNN 120

Query: 121 --SLDDDLFLLLKYLSCPYKINKSALRAPAAPHAFPQMLAVIHWLVQLAYYADHIASDEN 170
             SLDDDLFLLLKYL+CP+KINKSALRAPAAPHAFPQMLAVI+WLVQLA Y DH+ S++ 
Sbjct: 121 NSSLDDDLFLLLKYLNCPHKINKSALRAPAAPHAFPQMLAVIYWLVQLADYLDHLHSEDK 176

[Close]

BLAST of Spo17244.1 vs. UniProtKB/TrEMBL
Match: A0A103Y3D6_CYNCS (Kinetochore protein Ndc80 OS=Cynara cardunculus var. scolymus GN=Ccrd_019962 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 2.800e-31
Identity = 76/147 (51.70%), Postives = 103/147 (70.07%), Query Frame = 1

		  
Query: 27  GGGGVRRDSDASVCSGRPSSS-SFGL----AATGRPPNDKQAM---LRSINAYLTSHGVS 86
           GGGG RRDSDAS CS RPSSS S G     +AT     D+      + +IN+YL++    
Sbjct: 35  GGGGNRRDSDASFCSSRPSSSFSAGANNHRSATAVSITDRSYQSHAVSTINSYLSACSFP 94

Query: 87  LSLSFKPLPSAKDVTEVLRFLLSRFEFPCNKKSLDDDLFLLLKYLSCPYKINKSALRAPA 146
           +S   KPLPS KD+TE L+F+L+R E+P + K  +DDLF++LKY +CP K+NKSAL+AP 
Sbjct: 95  ISFKLKPLPSNKDITETLKFVLTRLEYPPSNK-FEDDLFIVLKYSNCPIKMNKSALKAPG 154

Query: 147 APHAFPQMLAVIHWLVQLAYYADHIAS 166
            PH+FP +LAV+HWLVQ+A Y +H+ +
Sbjct: 155 TPHSFPSVLAVLHWLVQIAMYNEHLVN 180

[Close]

BLAST of Spo17244.1 vs. UniProtKB/TrEMBL
Match: A0A067LHE2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16911 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.400e-30
Identity = 79/165 (47.88%), Postives = 108/165 (65.45%), Query Frame = 1

		  
Query: 15  RESLRPPSTPQ-----FGG--GGVRRDSDASVCSGRPSSSSFGLAATGRPPNDK---QAM 74
           ++S  P  TP      F G  G   RDSDAS  S RPS+   G+  T     D+    + 
Sbjct: 10  KDSFIPQPTPDRRQYPFSGAAGNTSRDSDASFASSRPST--VGVGRTSELYTDRGHQNSA 69

Query: 75  LRSINAYLTSHGVSLSLSFKPLPSAKDVTEVLRFLLSRFEFPCNKKSLDDDLFLLLKYLS 134
           +RSIN +L+SH   LSL   P+ SAK++TEVL+FLL + ++P  K  LDDDLF++LK L+
Sbjct: 70  VRSINTFLSSHNSLLSLRTHPISSAKEMTEVLQFLLHQLDYP--KAKLDDDLFVILKSLN 129

Query: 135 CPYKINKSALRAPAAPHAFPQMLAVIHWLVQLAYYADHIASDENT 170
           CP+K+NKSALRAP  PH +P  LA+IHWLVQ+A YA+H+A++  +
Sbjct: 130 CPFKVNKSALRAPNTPHNWPSFLALIHWLVQIAMYAEHLAANSRS 170

[Close]

BLAST of Spo17244.1 vs. UniProtKB/TrEMBL
Match: B9T7Y6_RICCO (Hec1 protein, putative OS=Ricinus communis GN=RCOM_0275810 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 1.800e-30
Identity = 77/162 (47.53%), Postives = 105/162 (64.81%), Query Frame = 1

		  
Query: 4   RGGATRASATDRESLRPPSTPQFGGGGVRRDSDASVCSGRPSSSSFGLAATGRPPNDKQ- 63
           RG  TR   T+    + P  P        RDSDAS  S RPS+   G ++        Q 
Sbjct: 2   RGNNTRRRPTESLIPQQPPPPDHHRQFTSRDSDASFASSRPSTIGVGRSSELYTDRGHQN 61

Query: 64  AMLRSINAYLTSHGVSLSLSFKPLPSAKDVTEVLRFLLSRFEFPCNKKSLDDDLFLLLKY 123
           + +R+IN YL+SH  SLSL   P+ SAKD+TEVL+FLL + ++P  K  L+DDLFL+LK+
Sbjct: 62  SAVRAINTYLSSHSSSLSLRTHPISSAKDITEVLQFLLHQLDYPTTK--LEDDLFLILKF 121

Query: 124 LSCPYKINKSALRAPAAPHAFPQMLAVIHWLVQLAYYADHIA 165
           L+CP+K++KSALRAP  PH +P  LA+IHWLVQ+A + +H+A
Sbjct: 122 LNCPFKVSKSALRAPNTPHNWPSFLALIHWLVQIAMFEEHLA 161

[Close]

BLAST of Spo17244.1 vs. ExPASy Swiss-Prot
Match: NDC80_CRYNB (Probable kinetochore protein NDC80 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=NDC80 PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.300e-9
Identity = 54/156 (34.62%), Postives = 80/156 (51.28%), Query Frame = 1

		  
Query: 23  TPQFGGG---GVRRDSDASVCSGRPSSSSFGLAATG----RPPNDK---QAMLRSINAYL 82
           TPQ   G    VRR S  +  S   +S + G+ +T     RP  DK      +R++N YL
Sbjct: 96  TPQMNRGIPGSVRRSSVFTSNSQGRTSMAPGVYSTAYKDPRPLRDKVFQSNCMRNVNEYL 155

Query: 83  TSHGVSLSLSFKPL--PSAKDVTEVLRFLLSRFEFPCNK--KSLDDDLFLLLKYLSCPY- 142
            S    L L+ K L  P+AK+   + +FL++    P     K  +DD   +LK L  P  
Sbjct: 156 ISVRYPLPLTAKTLTSPTAKEFQSIFKFLVNDLVDPGAAWGKKFEDDTLSILKDLKYPGM 215

Query: 143 -KINKSALRAPAAPHAFPQMLAVIHWLVQLAYYADH 163
             ++K+AL AP AP ++P MLA+++WLV L    D+
Sbjct: 216 DSVSKTALTAPGAPQSWPNMLAMLNWLVDLCKALDN 251

[Close]

BLAST of Spo17244.1 vs. ExPASy Swiss-Prot
Match: NDC80_CRYNJ (Probable kinetochore protein NDC80 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=NDC80 PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.300e-9
Identity = 54/156 (34.62%), Postives = 80/156 (51.28%), Query Frame = 1

		  
Query: 23  TPQFGGG---GVRRDSDASVCSGRPSSSSFGLAATG----RPPNDK---QAMLRSINAYL 82
           TPQ   G    VRR S  +  S   +S + G+ +T     RP  DK      +R++N YL
Sbjct: 96  TPQMNRGIPGSVRRSSVFTSNSQGRTSMAPGVYSTAYKDPRPLRDKVFQSNCMRNVNEYL 155

Query: 83  TSHGVSLSLSFKPL--PSAKDVTEVLRFLLSRFEFPCNK--KSLDDDLFLLLKYLSCPY- 142
            S    L L+ K L  P+AK+   + +FL++    P     K  +DD   +LK L  P  
Sbjct: 156 ISVRYPLPLTAKTLTSPTAKEFQSIFKFLVNDLVDPGAAWGKKFEDDTLSILKDLKYPGM 215

Query: 143 -KINKSALRAPAAPHAFPQMLAVIHWLVQLAYYADH 163
             ++K+AL AP AP ++P MLA+++WLV L    D+
Sbjct: 216 DSVSKTALTAPGAPQSWPNMLAMLNWLVDLCKALDN 251

[Close]

BLAST of Spo17244.1 vs. ExPASy Swiss-Prot
Match: NDC80_XENLA (Kinetochore protein NDC80 homolog OS=Xenopus laevis GN=ndc80 PE=1 SV=2)

HSP 1 Score: 55.1 bits (131), Expect = 8.900e-7
Identity = 33/108 (30.56%), Postives = 61/108 (56.48%), Query Frame = 1

		  
Query: 56  RPPNDK---QAMLRSINAYLTSHGVSLSLSFKPL--PSAKDVTEVLRFLLS----RFEFP 115
           RP +DK   Q  +R +  +L  +G S +L+ K L  PS KD  ++  F+ +     +E P
Sbjct: 83  RPLHDKAFIQQCIRQLCEFLNENGYSQALTVKSLQGPSTKDFLKIFAFIYTFICPNYENP 142

Query: 116 CNKKSLDDDLFLLLKYLSCPYKINKSALRAPAAPHAFPQMLAVIHWLV 155
            +K   ++++  + K L  P+ ++KS++    APH +PQ++A + WL+
Sbjct: 143 ESK--FEEEIPRIFKELGYPFALSKSSMYTVGAPHTWPQIVAALVWLI 188

[Close]

BLAST of Spo17244.1 vs. ExPASy Swiss-Prot
Match: NDC80_XENTR (Kinetochore protein NDC80 homolog OS=Xenopus tropicalis GN=ndc80 PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 8.900e-7
Identity = 33/108 (30.56%), Postives = 61/108 (56.48%), Query Frame = 1

		  
Query: 56  RPPNDK---QAMLRSINAYLTSHGVSLSLSFKPL--PSAKDVTEVLRFLLS----RFEFP 115
           RP +DK   Q  +R +  +L  +G S +L+ K L  PS KD  ++  F+ +     +E P
Sbjct: 83  RPLHDKAFIQQCIRQLCEFLNENGYSQTLTVKSLQGPSTKDFLKIFAFIYTFICPNYENP 142

Query: 116 CNKKSLDDDLFLLLKYLSCPYKINKSALRAPAAPHAFPQMLAVIHWLV 155
            +K   ++++  + K L  P+ ++KS++    APH +PQ++A + WL+
Sbjct: 143 ESK--FEEEIPRIFKELGYPFALSKSSMYTVGAPHTWPQIVAALVWLI 188

[Close]

BLAST of Spo17244.1 vs. TAIR (Arabidopsis)
Match: AT3G54630.1 (Kinetochore protein Ndc80 (InterPro:IPR005550))

HSP 1 Score: 131.3 bits (329), Expect = 5.500e-31
Identity = 67/150 (44.67%), Postives = 95/150 (63.33%), Query Frame = 1

		  
Query: 20  PPSTPQFGGGGVRRDSDASVCSGRPSSSSFGLAATGRPPNDKQAMLRSINAYLTSHGVSL 79
           PPS  Q       RDSDAS  S RPSS   GL   G   +D+ +M+R INA+L++H   +
Sbjct: 23  PPSIEQQRHLFNSRDSDASFASSRPSS--IGLGGRGAS-DDRSSMIRFINAFLSTHNFPI 82

Query: 80  SLSFKPLPSAKDVTEVLRFLLSRFEFPCNKKSLDDDLFLLLKYLSCPYKINKSALRAPAA 139
           S+   P+PS KD++E L+FLLS  ++PC+    D+DL   LK   CP+KI KS+L+AP  
Sbjct: 83  SIRGNPVPSVKDISETLKFLLSALDYPCDSIKWDEDLVFFLKSQKCPFKITKSSLKAPNT 142

Query: 140 PHAFPQMLAVIHWLVQLAYYADHIASDENT 170
           PH +P +LAV+HWL +LA +  H+ S+  +
Sbjct: 143 PHNWPTVLAVVHWLAELARFHQHLVSNSTS 169

The following BLAST results are available for this feature:

BLAST of Spo17244.1 vs. NCBI nr
BLAST of Spo17244.1 vs. UniProtKB/TrEMBL
BLAST of Spo17244.1 vs. ExPASy Swiss-Prot
BLAST of Spo17244.1 vs. TAIR (Arabidopsis)

BLAST of Spo17244.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

Zoom :

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Match Name	E-value	Identity	Description
gi\|902191596\|gb\|KNA11883.1\|	1.7e-90	100.	hypothetical protein SOVF_1310...	[more]
gi\|731319046\|ref\|XP_010670048.1\|	1.9e-57	69.6	PREDICTED: probable kinetochor...	[more]
gi\|976916252\|gb\|KVI01777.1\|	4.0e-31	51.7	Kinetochore protein Ndc80 [Cyn...	[more]
gi\|720093798\|ref\|XP_010246162.1\|	1.2e-30	48.2	PREDICTED: kinetochore protein...	[more]
gi\|802556479\|ref\|XP_012065655.1\|	2.0e-30	47.8	PREDICTED: probable kinetochor...	[more]

BLAST of Spo17244.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
A0A0K9QYW0_SPIOL	1.2e-90	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8CUI7_BETVU	1.3e-57	69.6	Uncharacterized protein OS=Bet...	[more]
A0A103Y3D6_CYNCS	2.8e-31	51.7	Kinetochore protein Ndc80 OS=C...	[more]
A0A067LHE2_JATCU	1.4e-30	47.8	Uncharacterized protein OS=Jat...	[more]
B9T7Y6_RICCO	1.8e-30	47.5	Hec1 protein, putative OS=Rici...	[more]

BLAST of Spo17244.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 4

Position :

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Match Name	E-value	Identity	Description
NDC80_CRYNB	3.3e-9	34.6	Probable kinetochore protein N...	[more]
NDC80_CRYNJ	3.3e-9	34.6	Probable kinetochore protein N...	[more]
NDC80_XENLA	8.9e-7	30.5	Kinetochore protein NDC80 homo...	[more]
NDC80_XENTR	8.9e-7	30.5	Kinetochore protein NDC80 homo...	[more]

BLAST of Spo17244.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1

Position :

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Match Name	E-value	Identity	Description
AT3G54630.1	5.5e-31	44.6	Kinetochore protein Ndc80 (Int...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005550	Kinetochore protein Ndc80	PANTHER	PTHR10643	KINETOCHORE PROTEIN NDC80	coord: 1..167 score: 8.9
IPR005550	Kinetochore protein Ndc80	PFAM	PF03801	Ndc80_HEC	coord: 60..167 score: 1.1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008283	cell proliferation
biological_process	GO:0009737	response to abscisic acid
biological_process	GO:0009414	response to water deprivation
biological_process	GO:0009627	systemic acquired resistance
biological_process	GO:0071806	protein transmembrane transport
biological_process	GO:0006626	protein targeting to mitochondrion
biological_process	GO:0051641	cellular localization
biological_process	GO:0016556	mRNA modification
biological_process	GO:0015031	protein transport
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0010103	stomatal complex morphogenesis
biological_process	GO:0007129	synapsis
biological_process	GO:0048453	sepal formation
biological_process	GO:0010564	regulation of cell cycle process
biological_process	GO:0007131	reciprocal meiotic recombination
biological_process	GO:0048451	petal formation
biological_process	GO:0000278	mitotic cell cycle
biological_process	GO:0000226	microtubule cytoskeleton organization
biological_process	GO:0051179	localization
biological_process	GO:0051567	histone H3-K9 methylation
biological_process	GO:0006260	DNA replication
biological_process	GO:0006306	DNA methylation
biological_process	GO:0000911	cytokinesis by cell plate formation
biological_process	GO:0006508	proteolysis
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0016020	membrane
cellular_component	GO:0005774	vacuolar membrane
cellular_component	GO:0005742	mitochondrial outer membrane translocase complex
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0031972	chloroplast intermembrane space
cellular_component	GO:0005634	nucleus
cellular_component	GO:0000776	kinetochore
molecular_function	GO:0015450	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0016491	oxidoreductase activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo16694	0.73	Barchart \| Table
Spo02287	0.70	Barchart \| Table
Spo01513	0.67	Barchart \| Table
Spo05949	0.67	Barchart \| Table
Spo09139	0.67	Barchart \| Table
Spo24213	0.67	Barchart \| Table
Spo18201	0.66	Barchart \| Table
Spo26994	0.66	Barchart \| Table
Spo02389	0.65	Barchart \| Table
Spo04683	0.65	Barchart \| Table