Spo04047 (gene) | SpinachBase

Overview


Name	Spo04047
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	30S ribosomal protein S7, chloroplastic
Location	SpoScf_70284 : 1 .. 350 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCAAACTTTTCATCGCCCAGCTCGAACTGAAGGCGATGTAATCAAACTTATGGTTGACGCCGTAGAGAATATAAAGCCCATATGCAAAGTAGAAAAAGTAAGAGTAGCAGGTACTATTTATGATGTCCCCGGGATTGTAGCCAGGGATCGTCAACAAACCTTAGCTATTCGTTGGATCCTTGAAGCAGCTTTCAAACGACGTATATCCTACAGGATAAGCTTAGAGAAATGTTCATTTGATGAGATACTGGATGCTTACCGAAAGAGGGGAATTTCGCGTAAGAAAAGGGAGAATCTTCATGGACTGGCTTCCGCCAATCGAAGTTTCGCGCATTTCAGATGGTGGTAA

mRNA sequence

ATCAAACTTTTCATCGCCCAGCTCGAACTGAAGGCGATGTAATCAAACTTATGGTTGACGCCGTAGAGAATATAAAGCCCATATGCAAAGTAGAAAAAGTAAGAGTAGCAGGTACTATTTATGATGTCCCCGGGATTGTAGCCAGGGATCGTCAACAAACCTTAGCTATTCGTTGGATCCTTGAAGCAGCTTTCAAACGACGTATATCCTACAGGATAAGCTTAGAGAAATGTTCATTTGATGAGATACTGGATGCTTACCGAAAGAGGGGAATTTCGCGTAAGAAAAGGGAGAATCTTCATGGACTGGCTTCCGCCAATCGAAGTTTCGCGCATTTCAGATGGTGGTAA

Coding sequence (CDS)

ATGGTTGACGCCGTAGAGAATATAAAGCCCATATGCAAAGTAGAAAAAGTAAGAGTAGCAGGTACTATTTATGATGTCCCCGGGATTGTAGCCAGGGATCGTCAACAAACCTTAGCTATTCGTTGGATCCTTGAAGCAGCTTTCAAACGACGTATATCCTACAGGATAAGCTTAGAGAAATGTTCATTTGATGAGATACTGGATGCTTACCGAAAGAGGGGAATTTCGCGTAAGAAAAGGGAGAATCTTCATGGACTGGCTTCCGCCAATCGAAGTTTCGCGCATTTCAGATGGTGGTAA

Protein sequence

MVDAVENIKPICKVEKVRVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFDEILDAYRKRGISRKKRENLHGLASANRSFAHFRWW

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo04047.1	Spo04047.1	mRNA

Homology

[Close]

BLAST of Spo04047.1 vs. NCBI nr
Match: gi|54606711|dbj|BAD66734.1| (ribosomal protein S7 (mitochondrion) [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 199.9 bits (507), Expect = 2.100e-48
Identity = 98/99 (98.99%), Postives = 99/99 (100.00%), Query Frame = 1

		  
Query: 1   MVDAVENIKPICKVEKVRVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEK 60
           M+DAVENIKPICKVEKVRVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEK
Sbjct: 50  MIDAVENIKPICKVEKVRVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEK 109

Query: 61  CSFDEILDAYRKRGISRKKRENLHGLASANRSFAHFRWW 100
           CSFDEILDAYRKRGISRKKRENLHGLASANRSFAHFRWW
Sbjct: 110 CSFDEILDAYRKRGISRKKRENLHGLASANRSFAHFRWW 148

[Close]

BLAST of Spo04047.1 vs. NCBI nr
Match: gi|162279925|ref|NP_064059.2| (rps7 gene product (mitochondrion) [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 197.6 bits (501), Expect = 1.000e-47
Identity = 97/99 (97.98%), Postives = 98/99 (98.99%), Query Frame = 1

		  
Query: 1   MVDAVENIKPICKVEKVRVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEK 60
           M+DAVENIKPICKVEKVRVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEK
Sbjct: 50  MIDAVENIKPICKVEKVRVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEK 109

Query: 61  CSFDEILDAYRKRGISRKKRENLHGLASANRSFAHFRWW 100
           C FDEILDAYRKRGISRKKRENLHGLASANRSFAHFRWW
Sbjct: 110 CLFDEILDAYRKRGISRKKRENLHGLASANRSFAHFRWW 148

[Close]

BLAST of Spo04047.1 vs. NCBI nr
Match: gi|224020962|ref|YP_002608195.1| (ribosomal protein S7 [Carica papaya])

HSP 1 Score: 191.4 bits (485), Expect = 7.400e-46
Identity = 93/99 (93.94%), Postives = 97/99 (97.98%), Query Frame = 1

		  
Query: 1   MVDAVENIKPICKVEKVRVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEK 60
           +VDAVENIKPIC+VEKVRVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEK
Sbjct: 51  LVDAVENIKPICEVEKVRVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEK 110

Query: 61  CSFDEILDAYRKRGISRKKRENLHGLASANRSFAHFRWW 100
           CSFDEILDAY+K GI+RKKRENLHGLAS NRSFAHFRWW
Sbjct: 111 CSFDEILDAYKKMGIARKKRENLHGLASTNRSFAHFRWW 149

[Close]

BLAST of Spo04047.1 vs. NCBI nr
Match: gi|927682212|gb|ALE29224.1| (ribosomal protein S7 (mitochondrion) [Heuchera parviflora var. saurensis])

HSP 1 Score: 190.3 bits (482), Expect = 1.600e-45
Identity = 94/99 (94.95%), Postives = 96/99 (96.97%), Query Frame = 1

		  
Query: 1   MVDAVENIKPICKVEKVRVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEK 60
           MVDAVENIKPIC+VEKV VAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEK
Sbjct: 50  MVDAVENIKPICEVEKVGVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEK 109

Query: 61  CSFDEILDAYRKRGISRKKRENLHGLASANRSFAHFRWW 100
           CSF EILDAYRKRGI+RKKRENLHGLAS NRSFAHFRWW
Sbjct: 110 CSFAEILDAYRKRGIARKKRENLHGLASTNRSFAHFRWW 148

[Close]

BLAST of Spo04047.1 vs. NCBI nr
Match: gi|849123226|ref|YP_009153930.1| (ribosomal protein S7 (mitochondrion) [Gossypium hirsutum])

HSP 1 Score: 190.3 bits (482), Expect = 1.600e-45
Identity = 92/99 (92.93%), Postives = 97/99 (97.98%), Query Frame = 1

		  
Query: 1   MVDAVENIKPICKVEKVRVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEK 60
           MVDAVENIKPIC+VEKVR+AGTIYDVPGIVA+DRQQTLAIRWILEAAFKRRISYRISLEK
Sbjct: 50  MVDAVENIKPICEVEKVRIAGTIYDVPGIVAKDRQQTLAIRWILEAAFKRRISYRISLEK 109

Query: 61  CSFDEILDAYRKRGISRKKRENLHGLASANRSFAHFRWW 100
           CSF EILDAYRKRGI+RKKRENLHGL+S NRSFAHFRWW
Sbjct: 110 CSFAEILDAYRKRGIARKKRENLHGLSSTNRSFAHFRWW 148

[Close]

BLAST of Spo04047.1 vs. UniProtKB/TrEMBL
Match: Q5U6D2_BETVU (Ribosomal protein S7 OS=Beta vulgaris subsp. vulgaris GN=rps7 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 1.400e-48
Identity = 98/99 (98.99%), Postives = 99/99 (100.00%), Query Frame = 1

		  
Query: 1   MVDAVENIKPICKVEKVRVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEK 60
           M+DAVENIKPICKVEKVRVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEK
Sbjct: 50  MIDAVENIKPICKVEKVRVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEK 109

Query: 61  CSFDEILDAYRKRGISRKKRENLHGLASANRSFAHFRWW 100
           CSFDEILDAYRKRGISRKKRENLHGLASANRSFAHFRWW
Sbjct: 110 CSFDEILDAYRKRGISRKKRENLHGLASANRSFAHFRWW 148

[Close]

BLAST of Spo04047.1 vs. UniProtKB/TrEMBL
Match: E6ZE69_BETVM (Ribosomal protein S7 OS=Beta vulgaris subsp. maritima GN=rps7 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 7.200e-48
Identity = 97/99 (97.98%), Postives = 98/99 (98.99%), Query Frame = 1

		  
Query: 1   MVDAVENIKPICKVEKVRVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEK 60
           M+DAVENIKPICKVEKVRVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEK
Sbjct: 50  MIDAVENIKPICKVEKVRVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEK 109

Query: 61  CSFDEILDAYRKRGISRKKRENLHGLASANRSFAHFRWW 100
           C FDEILDAYRKRGISRKKRENLHGLASANRSFAHFRWW
Sbjct: 110 CLFDEILDAYRKRGISRKKRENLHGLASANRSFAHFRWW 148

[Close]

BLAST of Spo04047.1 vs. UniProtKB/TrEMBL
Match: G2XLN3_BETMA (Ribosomal protein S7 OS=Beta macrocarpa GN=rps7 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 7.200e-48
Identity = 97/99 (97.98%), Postives = 98/99 (98.99%), Query Frame = 1

		  
Query: 1   MVDAVENIKPICKVEKVRVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEK 60
           M+DAVENIKPICKVEKVRVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEK
Sbjct: 50  MIDAVENIKPICKVEKVRVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEK 109

Query: 61  CSFDEILDAYRKRGISRKKRENLHGLASANRSFAHFRWW 100
           C FDEILDAYRKRGISRKKRENLHGLASANRSFAHFRWW
Sbjct: 110 CLFDEILDAYRKRGISRKKRENLHGLASANRSFAHFRWW 148

[Close]

BLAST of Spo04047.1 vs. UniProtKB/TrEMBL
Match: B9U3L4_CARPA (Ribosomal protein S7 OS=Carica papaya GN=rps7 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 5.100e-46
Identity = 93/99 (93.94%), Postives = 97/99 (97.98%), Query Frame = 1

		  
Query: 1   MVDAVENIKPICKVEKVRVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEK 60
           +VDAVENIKPIC+VEKVRVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEK
Sbjct: 51  LVDAVENIKPICEVEKVRVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEK 110

Query: 61  CSFDEILDAYRKRGISRKKRENLHGLASANRSFAHFRWW 100
           CSFDEILDAY+K GI+RKKRENLHGLAS NRSFAHFRWW
Sbjct: 111 CSFDEILDAYKKMGIARKKRENLHGLASTNRSFAHFRWW 149

[Close]

BLAST of Spo04047.1 vs. UniProtKB/TrEMBL
Match: A0A165EHU3_GOSRA (Ribosomal protein S7 OS=Gossypium raimondii GN=rps7 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 1.100e-45
Identity = 92/99 (92.93%), Postives = 97/99 (97.98%), Query Frame = 1

		  
Query: 1   MVDAVENIKPICKVEKVRVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEK 60
           MVDAVENIKPIC+VEKVR+AGTIYDVPGIVA+DRQQTLAIRWILEAAFKRRISYRISLEK
Sbjct: 50  MVDAVENIKPICEVEKVRIAGTIYDVPGIVAKDRQQTLAIRWILEAAFKRRISYRISLEK 109

Query: 61  CSFDEILDAYRKRGISRKKRENLHGLASANRSFAHFRWW 100
           CSF EILDAYRKRGI+RKKRENLHGL+S NRSFAHFRWW
Sbjct: 110 CSFAEILDAYRKRGIARKKRENLHGLSSTNRSFAHFRWW 148

[Close]

BLAST of Spo04047.1 vs. ExPASy Swiss-Prot
Match: RT07_BETVU (Ribosomal protein S7, mitochondrial OS=Beta vulgaris GN=RPS7 PE=2 SV=2)

HSP 1 Score: 197.6 bits (501), Expect = 6.400e-50
Identity = 97/99 (97.98%), Postives = 98/99 (98.99%), Query Frame = 1

		  
Query: 1   MVDAVENIKPICKVEKVRVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEK 60
           M+DAVENIKPICKVEKVRVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEK
Sbjct: 50  MIDAVENIKPICKVEKVRVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEK 109

Query: 61  CSFDEILDAYRKRGISRKKRENLHGLASANRSFAHFRWW 100
           C FDEILDAYRKRGISRKKRENLHGLASANRSFAHFRWW
Sbjct: 110 CLFDEILDAYRKRGISRKKRENLHGLASANRSFAHFRWW 148

[Close]

BLAST of Spo04047.1 vs. ExPASy Swiss-Prot
Match: RT07_WHEAT (Ribosomal protein S7, mitochondrial OS=Triticum aestivum GN=RPS7 PE=3 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 9.600e-46
Identity = 91/99 (91.92%), Postives = 94/99 (94.95%), Query Frame = 1

		  
Query: 1   MVDAVENIKPICKVEKVRVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEK 60
           MVDAV+NIKPIC+V KV VAGTIYDVPGIVARDRQQTLAIRWIL AAFKRRISYRISLEK
Sbjct: 50  MVDAVDNIKPICEVVKVGVAGTIYDVPGIVARDRQQTLAIRWILGAAFKRRISYRISLEK 109

Query: 61  CSFDEILDAYRKRGISRKKRENLHGLASANRSFAHFRWW 100
           CSF EILDAYRKRGISRK+RENLHGLAS NRSFAHFRWW
Sbjct: 110 CSFAEILDAYRKRGISRKRRENLHGLASTNRSFAHFRWW 148

[Close]

BLAST of Spo04047.1 vs. ExPASy Swiss-Prot
Match: RT07_ARATH (Ribosomal protein S7, mitochondrial OS=Arabidopsis thaliana GN=RPS7 PE=2 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 1.600e-45
Identity = 90/99 (90.91%), Postives = 94/99 (94.95%), Query Frame = 1

		  
Query: 1   MVDAVENIKPICKVEKVRVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEK 60
           MVDAVENIKPIC+V KV VAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEK
Sbjct: 50  MVDAVENIKPICEVAKVGVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEK 109

Query: 61  CSFDEILDAYRKRGISRKKRENLHGLASANRSFAHFRWW 100
           CSF EILDAY+KRG +R+KRENLHGLAS NRSFAHFRWW
Sbjct: 110 CSFAEILDAYQKRGSARRKRENLHGLASTNRSFAHFRWW 148

[Close]

BLAST of Spo04047.1 vs. ExPASy Swiss-Prot
Match: RT07_MARPO (Ribosomal protein S7, mitochondrial OS=Marchantia polymorpha GN=RPS7 PE=3 SV=2)

HSP 1 Score: 127.9 bits (320), Expect = 6.300e-29
Identity = 60/100 (60.00%), Postives = 85/100 (85.00%), Query Frame = 1

		  
Query: 1   MVDAVENIKPICKVEKVRVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYR-ISLE 60
           +V+A+EN+KPIC+V+KVR++GT   VP I+A +RQ+TLAIRW+LE+A KRR+  + ISL+
Sbjct: 131 LVNAIENVKPICEVKKVRISGTTRLVPSIIATNRQETLAIRWMLESAAKRRMGKKSISLD 190

Query: 61  KCSFDEILDAYRKRGISRKKRENLHGLASANRSFAHFRWW 100
           +C + EIL+A +K GI+RKKR++LH LA ANRSF+H+RWW
Sbjct: 191 QCLYAEILEASQKMGIARKKRDDLHKLAEANRSFSHYRWW 230

[Close]

BLAST of Spo04047.1 vs. ExPASy Swiss-Prot
Match: RS7_CAMHC (30S ribosomal protein S7 OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=rpsG PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 3.200e-17
Identity = 47/96 (48.96%), Postives = 66/96 (68.75%), Query Frame = 1

		  
Query: 3   DAVENIKPICKVEKVRVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCS 62
           DA+EN+KP+ +V+  RV G  Y VP  V   RQQ LAIRWI+  AF R+ S R  +EK +
Sbjct: 64  DAIENVKPVLEVKSRRVGGATYQVPIEVRPARQQALAIRWII--AFARKRSERTMIEKLA 123

Query: 63  FDEILDAYRKRGISRKKRENLHGLASANRSFAHFRW 99
           + E+LDA   +G S KK+E+ + +A AN++FAH+RW
Sbjct: 124 Y-ELLDAANSKGSSFKKKEDTYKMAEANKAFAHYRW 156

[Close]

BLAST of Spo04047.1 vs. TAIR (Arabidopsis)
Match: AT2G07696.1 (Ribosomal protein S7p/S5e family protein)

HSP 1 Score: 183.0 bits (463), Expect = 9.200e-47
Identity = 90/99 (90.91%), Postives = 94/99 (94.95%), Query Frame = 1

		  
Query: 1   MVDAVENIKPICKVEKVRVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEK 60
           MVDAVENIKPIC+V KV VAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEK
Sbjct: 50  MVDAVENIKPICEVAKVGVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEK 109

Query: 61  CSFDEILDAYRKRGISRKKRENLHGLASANRSFAHFRWW 100
           CSF EILDAY+KRG +R+KRENLHGLAS NRSFAHFRWW
Sbjct: 110 CSFAEILDAYQKRGSARRKRENLHGLASTNRSFAHFRWW 148

[Close]

BLAST of Spo04047.1 vs. TAIR (Arabidopsis)
Match: ATMG01270.1 (mitochondrial ribosomal protein S7)

HSP 1 Score: 183.0 bits (463), Expect = 9.200e-47
Identity = 90/99 (90.91%), Postives = 94/99 (94.95%), Query Frame = 1

		  
Query: 1   MVDAVENIKPICKVEKVRVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEK 60
           MVDAVENIKPIC+V KV VAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEK
Sbjct: 50  MVDAVENIKPICEVAKVGVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEK 109

Query: 61  CSFDEILDAYRKRGISRKKRENLHGLASANRSFAHFRWW 100
           CSF EILDAY+KRG +R+KRENLHGLAS NRSFAHFRWW
Sbjct: 110 CSFAEILDAYQKRGSARRKRENLHGLASTNRSFAHFRWW 148

[Close]

BLAST of Spo04047.1 vs. TAIR (Arabidopsis)
Match: ATCG01240.1 (ribosomal protein S7)

HSP 1 Score: 59.3 bits (142), Expect = 1.500e-9
Identity = 34/97 (35.05%), Postives = 57/97 (58.76%), Query Frame = 1

		  
Query: 4   AVENIKPICKVEKVRVAGTIYDVPGIVARDRQQTLAIRWILEAAFKR---RISYRISLEK 63
           A+  + P   V+  RV G+ + VP  +   + + LAIRW+L A+ KR    +++++S   
Sbjct: 65  AIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRNMAFKLS--- 124

Query: 64  CSFDEILDAYRKRGISRKKRENLHGLASANRSFAHFR 98
               E++DA +  G + +K+E  H +A ANR+FAHFR
Sbjct: 125 ---SELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155

[Close]

BLAST of Spo04047.1 vs. TAIR (Arabidopsis)
Match: ATCG00900.1 (Ribosomal protein S7p/S5e family protein)

HSP 1 Score: 59.3 bits (142), Expect = 1.500e-9
Identity = 34/97 (35.05%), Postives = 57/97 (58.76%), Query Frame = 1

		  
Query: 4   AVENIKPICKVEKVRVAGTIYDVPGIVARDRQQTLAIRWILEAAFKR---RISYRISLEK 63
           A+  + P   V+  RV G+ + VP  +   + + LAIRW+L A+ KR    +++++S   
Sbjct: 65  AIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRNMAFKLS--- 124

Query: 64  CSFDEILDAYRKRGISRKKRENLHGLASANRSFAHFR 98
               E++DA +  G + +K+E  H +A ANR+FAHFR
Sbjct: 125 ---SELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155

The following BLAST results are available for this feature:

BLAST of Spo04047.1 vs. NCBI nr
BLAST of Spo04047.1 vs. UniProtKB/TrEMBL
BLAST of Spo04047.1 vs. ExPASy Swiss-Prot
BLAST of Spo04047.1 vs. TAIR (Arabidopsis)

BLAST of Spo04047.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
gi\|54606711\|dbj\|BAD66734.1\|	2.1e-48	98.9	ribosomal protein S7 (mitochon...	[more]
gi\|162279925\|ref\|NP_064059.2\|	1.0e-47	97.9	rps7 gene product (mitochondri...	[more]
gi\|224020962\|ref\|YP_002608195.1\|	7.4e-46	93.9	ribosomal protein S7 [Carica p...	[more]
gi\|927682212\|gb\|ALE29224.1\|	1.6e-45	94.9	ribosomal protein S7 (mitochon...	[more]
gi\|849123226\|ref\|YP_009153930.1\|	1.6e-45	92.9	ribosomal protein S7 (mitochon...	[more]

BLAST of Spo04047.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
Q5U6D2_BETVU	1.4e-48	98.9	Ribosomal protein S7 OS=Beta v...	[more]
E6ZE69_BETVM	7.2e-48	97.9	Ribosomal protein S7 OS=Beta v...	[more]
G2XLN3_BETMA	7.2e-48	97.9	Ribosomal protein S7 OS=Beta m...	[more]
B9U3L4_CARPA	5.1e-46	93.9	Ribosomal protein S7 OS=Carica...	[more]
A0A165EHU3_GOSRA	1.1e-45	92.9	Ribosomal protein S7 OS=Gossyp...	[more]

BLAST of Spo04047.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
RT07_BETVU	6.4e-50	97.9	Ribosomal protein S7, mitochon...	[more]
RT07_WHEAT	9.6e-46	91.9	Ribosomal protein S7, mitochon...	[more]
RT07_ARATH	1.6e-45	90.9	Ribosomal protein S7, mitochon...	[more]
RT07_MARPO	6.3e-29	60.0	Ribosomal protein S7, mitochon...	[more]
RS7_CAMHC	3.2e-17	48.9	30S ribosomal protein S7 OS=Ca...	[more]

BLAST of Spo04047.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 4

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
AT2G07696.1	9.2e-47	90.9	Ribosomal protein S7p/S5e fami...	[more]
ATMG01270.1	9.2e-47	90.9	mitochondrial ribosomal protei...	[more]
ATCG01240.1	1.5e-9	35.0	ribosomal protein S7	[more]
ATCG00900.1	1.5e-9	35.0	Ribosomal protein S7p/S5e fami...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000235	Ribosomal protein S5/S7	PIR	PIRSF002122	RPS7p_RPS7a_RPS5e_RPS7o	coord: 1..99 score: 9.1
IPR000235	Ribosomal protein S5/S7	PANTHER	PTHR11205	RIBOSOMAL PROTEIN S7	coord: 1..98 score: 5.6
IPR023798	Ribosomal protein S7 domain	GENE3D	1.10.455.10		coord: 2..98 score: 2.9
IPR023798	Ribosomal protein S7 domain	PFAM	PF00177	Ribosomal_S7	coord: 2..91 score: 3.5
IPR023798	Ribosomal protein S7 domain	unknown	SSF47973	Ribosomal protein S7	coord: 2..98 score: 1.31
None	No IPR available	PANTHER	PTHR11205:SF23	RIBOSOMAL PROTEIN S7, MITOCHONDRIAL	coord: 1..98 score: 5.6

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005763	mitochondrial small ribosomal subunit
cellular_component	GO:0000312	plastid small ribosomal subunit
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo16266	0.69	Barchart \| Table
Spo17923	0.67	Barchart \| Table
Spo24718	0.67	Barchart \| Table
Spo06201	0.66	Barchart \| Table
Spo08440	0.65	Barchart \| Table