Spo17989 (gene) | SpinachBase

Overview


Name	Spo17989
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	Super_scaffold_101 : 910838 .. 916735 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGAAAACCGCTGAAAAGACGCTCAAGCAAGAGATTAAGCACGATATGCTTATGGTGCGTAAGGGCAAGAACTTCAAGAAATCGAGCAAGAATAAGGGCAAGAAGGGTAAGGGCAAGGCTACGCCCTCATCCAAGTCCAACGGCACCAGTTCTGGTAAACAGAAAAGGGTGACTCGTTCTCCTGTCGACTTTGAATGCTTCTACTGCAGGAAGAAGGGGCATTGGAAGAGGGATTGCTTGAAGAAGAAGGAAGATGAGAAGAACGGGAACGTTGCTTCTACTTCAGGTATATATATGTTATACATTGTAATCTTGCTAATTCTACTTCTTGGGTATTAGATACTGGTTGTGGCTCACACTTATGTTCCAATTCGCAGGGACTAAGGAGAAGTAGAAAGCTTGATAAAGGCGAGATGGATCTACGCGTGGGAAATGGAGCACGGATTGCTGCATTAGCCGTAGGATCTTATTTTATTTCTTTGCCTAGTGGGTTTGTTTTGGAACTAGAAAACTGTTACTATGTTCCTAGTATCACCAGAAACATCATTTCCGTTTAAAGTTTGGATTCTAAAGGTTTTAGTTTTCAATTTAAAGACAATAGTTGTTCTTTTCCTTTGAATGGAATGTTTTATGGTTCAGCACAACAAGAAAACAGTCTTTATGTGCTAGATACGAGCAAACACATTTATAACATAAATACCAAAAAGTCTAAAACTGGTGATTCGGATCTCACATTTCTGTGGCATTGTCGATTAGGCCATATAAACATAAAGCGCATGGAATTACTTCAACGGAAATGAATTCTAGAATCATTCGACTTAGAGAAGATTGATCAATGCGAATCTTGTTTACTTGGCAAAATGACAAAGAAACCTTTCTCAAAGGTGGGAGAAAGAGCAAGCGAACTACTAGGGCTAATACATACGGACGTATGTGGGCCTATCACTAGAGGAAAAATCGTCATGTGCTTCCCTTCAAGTGCGGCTCATTTAGTGAATTGGCAGCACTTGAGAGCATGAAAAATAAAAGAAAAAATACATTTTCACAAGTGCGGGCTAATTTTACAAAAGCCACACATAATATTTCTAAATTATTGCAAAAAAAGGAAAATATTTCTAAAATCAGAGAATCTCTCTCCTCGATTCTTCTCCCTCTTCCTCTTCAGCTTCAGCTTCGTTTTCTCTCTCCTCTGTCGTCGCCGTCGCTTCTTCACCGCCGGAGATCGATATCCCCCACCTCCGTTGATCTCTACCCTCTTCCAGATCAGACTAATTCAGGTTTGTTCATCGAATTTTTTTTTTCTGGTTATTTTTGGCGATTTTTCCCTTCAATCCTCCGCCCTAATCAATTTCTTTACTCCAATTTCCTGGACATTGGAGGACCTCTCATTTTTCGTTAATTATCCATTTTTATGCAAATCTAGGGTTGATGAACTACTTGCTTGTTGCAATTTTCTTTCTCAATTGCCAGATTTACAAAATTGAAGAAGTTTATTTTTGGGGTTTTGTTCTGTTTTGTTGTTTGTTGATGTATGAATTCAAAGCTTAGACAAACCAATTAAATGATGTAAAGGACTGGACGATAAAGCATACCGCCTGACCATCCAGAGTTGAATGTAGCCTCCCTCAAACATGTACGTTGTTCAGAATTTATAAAAAGGCAGTTATATAATGGCTACAAAATGCTCAAGGTACATTTTATCAGACACACAGTTTATGATGATAAGATGATAACAGCATCAAGTATCACACAGTCAGCAGTGTGTGTCTGGTCATAACAGGGACAAACTTGCTGTAAATCACTTGTTTAGGAGGGGGAGTAGTGACGTATGTCAGTTTTAGCTTGAGTAGAAACCGGGAGGTAGATTCTGGAAATTCTAGCGGAGCTGCAAGTGGTTATAGCAGTCTAGTTTGAACTTTAGATAGTGTAATTCCAGGAAAGAGTTGGCAGAAAATGTAAGGAAAATTTCAAACTATAATCCCAACTATGGATAGTCTTCCCACAATAATCCCAAGTATGTGTTATCCCACAGAAATCAGAACTATGTGAGTTGTATTCCCAAAATAAAATCCGGTGTGACTAGTTACCTGGTTAACCAGTTAGCTGACTCCTTTTTTCCATTTTCGCTTTTGTTCTAGTTTGCTGCCAACTAAAATGTCTCGTTCTTAAATTCATTGTATTATGTTGATCAGTGGTGCTTTTGTCATGCAGTAAAAATAATCAGTAATTTTAGTTACTGGGAACATGTTGCTCTTTTCTGTTGAAAAATCTGATCTTTCTTTTTCAACTTAGGCTAGTGTTATTTCTCTATATGTTGTTTCATGTGCAGTTTGTTTAGAATTGCAGAAAAATTCACTGATTGTTCATTCACATAGCTAAGAGATTGTCTCTTGGACTCTGAAATCCAACAACATTCCTTGCAGGCCACTGTTAGCGTACAACTGTGATAACTCTTTGAAAGGCCTTATATTTATTGCCGGGTGAGTCACCAGGATTCTTTTCATCCTTGGAAGTATGCAACTTGATTGTTTAATATTATTATGTAGTTTATAACTGTATCTGAGCACTTTAAGTTTATGTATACTATATGTAACCATGTTTAATCCAGATACTTTACTTTTTTATGTCTCTTAATCAAATAATGACTGCTTATAATTATCGAATCCTATAAGGTAGTCAAAGTCTCAAGTTAAATGTCCTTTGGAAAGTTTCCGTCTTGCAGATGGCCCAACTACTGAATTGTAACATTACTAGTAGCTTAATCAAGAGTTATTCATAATTGTTGTTTATACCTGTTGGCCACTGATAGTTGCAGATGAGATTTCTTTAAATATCAACTTTGCTACTCGAATAATAAGTACCAGTACCGAATGGGAAACGTCTACTGTTTAGACTCTCTAGTTCCTTGCAGATTTTGAAGGATTACTTGTCTTTTCCTGATATGTATTTCATATAAATAGGAAGAGAATTGTAAACTAACCACTGGAGATGGAGCACATGATTTTCAAGGGAGGCCTGTGGAATTAATTTGGAGACCCTGTCTTTTTATTTGTGGTGAGTGTTGGAATGCTAGCCATTACTATTCTTGTCAGAACACTATAATCTTTAGTATTAACCGTTTAATCCTCCCCTGCCCCCCTTTCTTCTTCTATGTACATGTAATGACCATGTAAGTGAACGTCTTGCCTTCTATGGTGTCAGTACAAACCTAGTTAGTTATATATGGTGTCAATGCTCTGGGTGTTTTTGTACTTTGCATAGATTATTGCTTGATTGTACTTTGTATAGATTATTGCTTGATATTCACTAGTAGAAAAATCTTTTTGTGGCAATACTTAATATAATGATTCTCTTGCACATATGATGATATTGGAACCAATGTTGAGAACGCTCAAGCAGGCGACCCATCTGGCAAAGGCATCAAAGACTCGGCGTTCAAATTCAGCACTGGTCAGTTGTGTTTTCACCGCTGATGTTTCTTCCAGTGTTATCTTATCCAAATATTTTGGCAATAGTTAGTCATCGTGTTGGGTTTGGGGGGGGGGGGGGGGGGGGGGGNGGGGGGGGGGGAGGTTAAAAAAATGAAAGAATACGCTTTTCTGTTTGTTTTGACAGTCTTGGCTATATTCATTGTGGCTTGTGAACGAAAGTTCAACTAGGATTTGAACTAAAAATTTAGAATTTGGTTGATAACCGTGTTAACCCAACTTATAGATGTAACACGTGACTTCTTAACAGTTAACCCACCCCCTAGGGTATGACCTATAATGATCAACGAGCCTTATATATGTGCCTAACTTAACTAAAGTAGGTACAAATGAGTTTTAGAAACATTAAATAAATCTAATAAACATGTAAAGGGTTTAAAATACCCATTTAGGTTCATTAGTTGAAAGTTTGGACCGAAATAAGCCGTTTTAGTCAAAATGTAACCTATACTTATCAAACGAGTTTCATATATGCATAACTTGACTAAAGTAGGTGAGAATGAGTATTTTTTTTTAAACATATATCTAAGTATATTAAACATCTAAAGGGTTATAAATACTTATATAGGTTCATTGGTTGAAAGTTAGAACCGAAATATGTCATTTTAGTCAAAATGTGTCCTATAATGATCAAACGAGTCTTAAATGTGTATAATTTGACCAAAGTATATGAGAATGAGTATCTGAAACATAAAATTAAGTATTTTATACATAAAAAGACTTTAAAATACTCATTTAAGTTCATTAGTTGAAATTTGGGATCGAAATTAGCCATTTTAGTCAAAATTTGACCCATAATGAACTAACGAAGCTTAAATGTGCATAACTTCACCAAAATGGTGAGAATGAGTTTTTGAAACATAAAAATAAGTGTATTAAACAAGGAAAGACTTTAAAATACACATTTAAGTTCATTAGTTGAAAGTTGGGACCGAAATTAGCCATTTTAGTCAAAACGTGACCGATAATGAACTAACGAAGTTTAAATGTGCATAACTTCACCAAAATGGGTAGAATGAGTATTTGAAACATAAAACTTAAGTTTATTAAACATGGAAAGACTTTAAAATACTCATTTAAGTTCATTAGTTGAAAGTTAGGACCGAATTTAGTCATTTTAGTCAAAACGTGACCGATAATGAACTAACGATCCTTATATGTGCATAACTTCACCAAATGGGTGAGAATGAGTATTTGAAACATAAAACTAAGTGTATTAAACATGGAAATACTTTGAAATACTCATTTAAGTTCATTAGATAAAAGTTGGGACCGAAATTAGTCATTTTAGTCAAAATGTGACCGATAATGAACTAACGAGGCTTAAATGTGCATAACTTCACAAAAATGGGTGAGAATGAGTCTTTGAAACATAAAAATAAGTTTATTAAACATGGAAGGACTTTAAAATATTTATTTAAGTTCATTAGTTGAAAGTTGGGACCGAAATTAACCAATTTTATTATTATATGGTTCATTATTTCTTTATTATGAACAAATTAAGTCTTAATTTATTTTACGAATCAATATTTATAATATAACTAAAGTGTATATATATTTTTTGATGGCTGATCTTTTTAAGGTCTTCAATAATACGAGGGAGCGGCCTTTCACCTTTGAGGAGCTAGATGAAGTTCGAGAAATGTTGGCAAACTTCATTACCAGTGATTGTTTTTGATATTTTCTTGTACTGAATCTTAAATTATGGATGCTAGCTAGTGTTTCATATGATTGTAATGTAATCGACTTTCATATTTACAATTATATACTATTTATTTTAATTATCTATATAATTGGATACTTTTTGTATGACGTATGAAGGTTAATCAGTGGCGTGGTCCAATTATAATATGTAGCAGGGAAATCGTTGTATAACAAATCTAGATCAAGTGCGGCTCATTTATAGGCCAAGTGCGGCTCATTTTTATGCTTATGATGCCCATTTCTATGTCAAGTGCGGGCTCATTTTCAAATTTGGCAGCACCAAATATGTCAAGTGCGGGCTCATTTTCAATATTGGCAGCACCAAATATGTCAAGTGCGGGCTCATTTTCAAAATTGGGAGCACCAAATATATCAAGTGCGGGCTCATATTCTAAAATTGGCAGCACAAAATATGTCAAGTGCGGGCTCATTTTCCAAATTGGCAGCACTTGAAATATCAAGTGCTGCCAATATTTTGGCAGCACTTGAGAAACATCAAGTGCGGGCAGGCCATGTTCTGCACATGTAAAAGCCCGCACTAAACCCCTTAAAATGAGCCCGCACTTGAGGTTTTTTCCTCTAGTGTATGAGTACGAAAGCTAGAGGTGAGTTCAGCTATTTCATAACGTTTACAGACAACTTCAGTAGATATGGCTATATTTACTTAATGAAGCACAAGTCTGAATCGTTTGAGAAATTCAGA

mRNA sequence

ATGCTGAAAACCGCTGAAAAGACGCTCAAGCAAGAGATTAAGCACGATATGCTTATGGTGCGTAAGGGCAAGAACTTCAAGAAATCGAGCAAGAATAAGGGCAAGAAGGGTAAGGGCAAGGCTACGCCCTCATCCAAGTCCAACGGCACCAGTTCTGGTAAACAGAAAAGGGTGACTCGTTCTCCTGTCGACTTTGAATGCTTCTACTGCAGGAAGAAGGGGCATTGGAAGAGGGATTGCTTGAAGAAGAAGGAAGATGAGAAGAACGGGAACGTTGCTTCTACTTCAGAGAATCTCTCTCCTCGATTCTTCTCCCTCTTCCTCTTCAGCTTCAGCTTCGTTTTCTCTCTCCTCTGTCGTCGCCGTCGCTTCTTCACCGCCGGAGATCGATATCCCCCACCTCCGTTGATCTCTACCCTCTTCCAGATCAGACTAATTCAGTTATATAATGGCTACAAAATGCTCAAGGTACATTTTATCAGACACACAGTTTATGATGATAAGATGATAACAGCATCAAGTATCACACAGTCAGCAGTGTGTGTCTGGCCTTATATTTATTGCCGGGAAGAGAATTGTAAACTAACCACTGGAGATGGAGCACATGATTTTCAAGGGAGGCCTGTGGAATTAATTTGGAGACCCTGTCTTTTTATTTGTGAACGCTCAAGCAGGCGACCCATCTGGCAAAGGCATCAAAGACTCGGCGTTCAAATTCAGCACTGA

Coding sequence (CDS)

ATGCTGAAAACCGCTGAAAAGACGCTCAAGCAAGAGATTAAGCACGATATGCTTATGGTGCGTAAGGGCAAGAACTTCAAGAAATCGAGCAAGAATAAGGGCAAGAAGGGTAAGGGCAAGGCTACGCCCTCATCCAAGTCCAACGGCACCAGTTCTGGTAAACAGAAAAGGGTGACTCGTTCTCCTGTCGACTTTGAATGCTTCTACTGCAGGAAGAAGGGGCATTGGAAGAGGGATTGCTTGAAGAAGAAGGAAGATGAGAAGAACGGGAACGTTGCTTCTACTTCAGAGAATCTCTCTCCTCGATTCTTCTCCCTCTTCCTCTTCAGCTTCAGCTTCGTTTTCTCTCTCCTCTGTCGTCGCCGTCGCTTCTTCACCGCCGGAGATCGATATCCCCCACCTCCGTTGATCTCTACCCTCTTCCAGATCAGACTAATTCAGTTATATAATGGCTACAAAATGCTCAAGGTACATTTTATCAGACACACAGTTTATGATGATAAGATGATAACAGCATCAAGTATCACACAGTCAGCAGTGTGTGTCTGGCCTTATATTTATTGCCGGGAAGAGAATTGTAAACTAACCACTGGAGATGGAGCACATGATTTTCAAGGGAGGCCTGTGGAATTAATTTGGAGACCCTGTCTTTTTATTTGTGAACGCTCAAGCAGGCGACCCATCTGGCAAAGGCATCAAAGACTCGGCGTTCAAATTCAGCACTGA

Protein sequence

MLKTAEKTLKQEIKHDMLMVRKGKNFKKSSKNKGKKGKGKATPSSKSNGTSSGKQKRVTRSPVDFECFYCRKKGHWKRDCLKKKEDEKNGNVASTSENLSPRFFSLFLFSFSFVFSLLCRRRRFFTAGDRYPPPPLISTLFQIRLIQLYNGYKMLKVHFIRHTVYDDKMITASSITQSAVCVWPYIYCREENCKLTTGDGAHDFQGRPVELIWRPCLFICERSSRRPIWQRHQRLGVQIQH

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo17989.1	Spo17989.1	mRNA

Homology

[Close]

BLAST of Spo17989.1 vs. NCBI nr
Match: gi|902095074|gb|KNA03392.1| (hypothetical protein SOVF_209650, partial [Spinacia oleracea])

HSP 1 Score: 70.1 bits (170), Expect = 6.000e-9
Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 1

		  
Query: 113 FVFSLLCRRRRFFTAGDRYPPPPLISTLFQIRLIQL 149
           FVFSLLCRRRRFFT GDR PPPPLISTLFQIRL+Q+
Sbjct: 1   FVFSLLCRRRRFFTTGDRSPPPPLISTLFQIRLLQV 36

[Close]

BLAST of Spo17989.1 vs. NCBI nr
Match: gi|731371355|ref|XP_010666016.1| (PREDICTED: uncharacterized protein LOC104883233 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 62.8 bits (151), Expect = 9.600e-7
Identity = 43/100 (43.00%), Postives = 57/100 (57.00%), Query Frame = 1

		  
Query: 1   MLKTAEKTLKQEIKHDMLMVRKGKNFKKSSKNKGK----KGKGKATPSSKSNGTSSGKQK 60
           MLKTAE ++K   K+ +LM++K K   K   NK +    KGKGK    +K+  T      
Sbjct: 53  MLKTAEPSIKVAPKNHVLMIQKKKGVFKKQGNKKQYPQSKGKGKQVVKTKAGAT------ 112

Query: 61  RVTRSPVDFECFYCRKKGHWKRDCLKKKEDEKNGNVASTS 97
                 +D ECF+  K GHWKR+C K  ED+KNG +ASTS
Sbjct: 113 ------LDQECFHYHKPGHWKRNCPKYLEDKKNGKIASTS 140

[Close]

BLAST of Spo17989.1 vs. NCBI nr
Match: gi|960485473|ref|XP_014757873.1| (PREDICTED: uncharacterized protein LOC106866720, partial [Brachypodium distachyon])

HSP 1 Score: 61.2 bits (147), Expect = 2.800e-6
Identity = 46/95 (48.42%), Postives = 56/95 (58.95%), Query Frame = 1

		  
Query: 1   MLKTAEKTLKQEIKHDMLMVRKGKNFKKSSKNKG---KKGKGKATPSSKSNGTSSGKQKR 60
           MLKTAE  +K+E  H +LMV K  +FKK+   KG   K GK  ATP+ KS    SG +  
Sbjct: 369 MLKTAEVEIKKE--HQVLMVNKTTSFKKAKGKKGNFKKGGKTVATPAKKSK---SGPKP- 428

Query: 61  VTRSPVDFECFYCRKKGHWKRDCLKKKEDEKNGNV 93
                 D ECFYC+  GHWKR+C K   D+K GNV
Sbjct: 429 ------DTECFYCKGTGHWKRNCPKYLADKKAGNV 451

[Close]

BLAST of Spo17989.1 vs. NCBI nr
Match: gi|474373353|gb|EMS63983.1| (Protein phosphatase 2C 35 [Triticum urartu])

HSP 1 Score: 61.2 bits (147), Expect = 2.800e-6
Identity = 41/94 (43.62%), Postives = 55/94 (58.51%), Query Frame = 1

		  
Query: 1   MLKTAEKTLKQEIKHDMLMVRKGKNFKKSSKNKGKKGKGKATPSSKSNGTSSGKQKRVTR 60
           MLKTAE  +K+E  H +LMV K  +FKK       KGKGK   + K NG     Q++  +
Sbjct: 45  MLKTAEVEIKKE--HQVLMVNKTTSFKK-------KGKGKKKGNFKKNGKQVATQEKKPK 104

Query: 61  S--PVDFECFYCRKKGHWKRDCLKKKEDEKNGNV 93
                + ECFYC++ GHWKR+C K   D+K+G V
Sbjct: 105 PGPKPETECFYCKQTGHWKRNCPKYLADKKDGKV 129

[Close]

BLAST of Spo17989.1 vs. NCBI nr
Match: gi|731317601|ref|XP_010669277.1| (PREDICTED: uncharacterized protein LOC104886528 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 59.7 bits (143), Expect = 8.200e-6
Identity = 47/97 (48.45%), Postives = 56/97 (57.73%), Query Frame = 1

		  
Query: 1   MLKTAEKTLKQEIKH-DMLMVRKGKNFKKSSKNKGKKGKGKATPSSKSNGTSSGKQKRVT 60
           ML  AE++L  E KH D+LMVRKGK FKK      KK KGK   S   N  S  K     
Sbjct: 14  MLIQAERSLPTEPKHKDVLMVRKGKQFKKKGAPM-KKNKGKVVAS---NDISKPKVTPKE 73

Query: 61  RSPVDFECFYCRKKGHWKRDCLKKKEDEKNGNVASTS 97
           +     ECF+C K GHWKR+C +  ED+K+G  ASTS
Sbjct: 74  KVAALHECFHCHKIGHWKRNCPEYLEDKKSG--ASTS 104

[Close]

BLAST of Spo17989.1 vs. UniProtKB/TrEMBL
Match: A0A0K9Q7Y6_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_209650 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 4.200e-9
Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 1

		  
Query: 113 FVFSLLCRRRRFFTAGDRYPPPPLISTLFQIRLIQL 149
           FVFSLLCRRRRFFT GDR PPPPLISTLFQIRL+Q+
Sbjct: 1   FVFSLLCRRRRFFTTGDRSPPPPLISTLFQIRLLQV 36

[Close]

BLAST of Spo17989.1 vs. UniProtKB/TrEMBL
Match: M7ZL73_TRIUA (Protein phosphatase 2C 35 OS=Triticum urartu GN=TRIUR3_30638 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.000e-6
Identity = 41/94 (43.62%), Postives = 55/94 (58.51%), Query Frame = 1

		  
Query: 1   MLKTAEKTLKQEIKHDMLMVRKGKNFKKSSKNKGKKGKGKATPSSKSNGTSSGKQKRVTR 60
           MLKTAE  +K+E  H +LMV K  +FKK       KGKGK   + K NG     Q++  +
Sbjct: 45  MLKTAEVEIKKE--HQVLMVNKTTSFKK-------KGKGKKKGNFKKNGKQVATQEKKPK 104

Query: 61  S--PVDFECFYCRKKGHWKRDCLKKKEDEKNGNV 93
                + ECFYC++ GHWKR+C K   D+K+G V
Sbjct: 105 PGPKPETECFYCKQTGHWKRNCPKYLADKKDGKV 129

The following BLAST results are available for this feature:

BLAST of Spo17989.1 vs. NCBI nr
BLAST of Spo17989.1 vs. UniProtKB/TrEMBL
BLAST of Spo17989.1 vs. ExPASy Swiss-Prot
BLAST of Spo17989.1 vs. TAIR (Arabidopsis)

BLAST of Spo17989.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
gi\|902095074\|gb\|KNA03392.1\|	6.0e-9	88.8	hypothetical protein SOVF_2096...	[more]
gi\|731371355\|ref\|XP_010666016.1\|	9.6e-7	43.0	PREDICTED: uncharacterized pro...	[more]
gi\|960485473\|ref\|XP_014757873.1\|	2.8e-6	48.4	PREDICTED: uncharacterized pro...	[more]
gi\|474373353\|gb\|EMS63983.1\|	2.8e-6	43.6	Protein phosphatase 2C 35 [Tri...	[more]
gi\|731317601\|ref\|XP_010669277.1\|	8.2e-6	48.4	PREDICTED: uncharacterized pro...	[more]

BLAST of Spo17989.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 2

Position :

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x 1


Match Name	E-value	Identity	Description
A0A0K9Q7Y6_SPIOL	4.2e-9	88.8	Uncharacterized protein (Fragm...	[more]
M7ZL73_TRIUA	2.0e-6	43.6	Protein phosphatase 2C 35 OS=T...	[more]

BLAST of Spo17989.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo17989.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

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Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	GENE3D	4.10.60.10		coord: 66..88 score: 1.
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 66..80 score: 1.
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 66..82 score: 0
IPR001878	Zinc finger, CCHC-type	PROFILE	PS50158	ZF_CCHC	coord: 67..80 score: 9
IPR001878	Zinc finger, CCHC-type	unknown	SSF57756	Retrovirus zinc finger-like domains	coord: 51..88 score: 1.

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019375	galactolipid biosynthetic process
biological_process	GO:0007033	vacuole organization
biological_process	GO:0016311	dephosphorylation
biological_process	GO:0016036	cellular response to phosphate starvation
biological_process	GO:0045892	negative regulation of transcription, DNA-templated
biological_process	GO:0016310	phosphorylation
biological_process	GO:0009231	riboflavin biosynthetic process
biological_process	GO:0046487	glyoxylate metabolic process
biological_process	GO:0010228	vegetative to reproductive phase transition of meristem
biological_process	GO:0090503	RNA phosphodiester bond hydrolysis, exonucleolytic
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0048193	Golgi vesicle transport
biological_process	GO:0007030	Golgi organization
biological_process	GO:0000902	cell morphogenesis
biological_process	GO:0016049	cell growth
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003919	FMN adenylyltransferase activity
molecular_function	GO:0008967	phosphoglycolate phosphatase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0004535	poly(A)-specific ribonuclease activity
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008531	riboflavin kinase activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo08713	0.69	Barchart \| Table
Spo16911	0.69	Barchart \| Table
Spo06293	0.68	Barchart \| Table
Spo11961	0.68	Barchart \| Table
Spo05135	0.68	Barchart \| Table
Spo02792	0.68	Barchart \| Table
Spo15639	0.67	Barchart \| Table
Spo25483	0.66	Barchart \| Table
Spo02932	0.66	Barchart \| Table
Spo08645	0.66	Barchart \| Table
Spo08850	0.66	Barchart \| Table
Spo11923	0.66	Barchart \| Table
Spo13184	0.66	Barchart \| Table
Spo01261	0.66	Barchart \| Table
Spo25159	0.66	Barchart \| Table
Spo01426	0.65	Barchart \| Table