Spo03116 (gene)

Overview
NameSpo03116
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSuper_scaffold_102 : 483368 .. 485495 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAAACTTTTTAATTCCCCGCTTCAGCTCCTTCCCCTTCACTGGTTCGCTGCTCCTTCCCCTTCACTGGTTCGCTGCTTTGATTTTGTTTTCATTTTCCCACTTTTCCTCCTTCCTCTCTCTGGTTCTATGCGCCTTCCCTTTCTTTGGATTCTAACAAGGTTGTTGTTTCCCCACCGTCGTGGCGCCGTCGTTACTGCCTCCTCACGAACTGGTAATCTCCTTAACTCACTTCATTAATTAGATTGAATAAAATAAACATCCCCAATTGGGCAAACCCTAGCCATTTCAATTGATTTTCTCCCTCCTTTTGTTGTTGTACGACGAGCACTCCACCGCCGACGTCGTTGTTGACATGGTGGTCATGTTCTTGTTGCTGGTGTTGGGTTGCCGGTCTCACTTTCTCCTCTCCTTGTCCTTATTTCTTTGCTCCGCTGAGCCACTGCAACCCTGCCACCCTGTACTCGGCCACCGTTTTTTATCTGCTCCTCTACCGCCGTTTCCGGTGAGCTTGCTAGGAGTGGCTATCAATTTTTCAGCGAGTCACTAAGCACTTTCTCTATTACTCGATTTATTTTGTATGCTCTTCTTACTCAAATTTTACATTCCTTCTAATAATGAATATATTGGGTTCTGTTTGGCCTTTTTCCAGTGATTTGCTTCGTTTGGGTTACATAAATCCTCTTGTTTTATTTCATTATATCAATTGAGGCATTTTTCAAAGATTTTCGATTGAGTTATTGTGAAAATTTATGATCTAGTAGGTAGTCATATGATTGTTACCGAGGAGAAAACATACTTAATTATCATTTCTTGAATGATTTTGCATTACATTTTAAATCCTGTTAAAAATTGGGAATTACATGAAATTGGTTGATAAAAAATGTCATGTTTGCGTCTCCCTCCTGGTATTTGATGTTAATTACACTTGTTAGTGAAAAGGCCCGTTTGTTGTGTTTTATAGGACTCTATTTGACCTTTACCTCCTTGAAAACATAAGTGATGATGGAATCTACCTTCTTGAAAATGGCATGGATGATTTAATTTATATAGGCTTTAATTTAATGAGATACGACGTCATATTTACGGTACACCTACAAGTTCTCTTGATTTTTAAAGACAAATGTGCATAATCTATGTCGTGAAATGTCATTAATTACTAACAATTACCTTCTTGCAGCTTAAAACTTTGCAGGCAAGGAGACTCTTCAGGTAACATGCCAGACTTTCTATCTAGCGATTAGGTTAATATAAATTTGGATATATGTAGCTTACCCTATACACACATTCTCGTATAAGTATTGCTTGTTTGTGTGAGCATACATTCACATATATGTAGGTCTGCGGTGTGATCAATTTGTACCAATTTGTACCGCACATTCTCGTATAAGTATTGCTTGTTTGTGTGAAAATACACTCATATAATGATTGATCTCTTCTTATCAATTAAGCTAGTGGTGTGAAAAAATCTCCTGCTAGTAAGTGTTACAACAAGGCTTCTGGCTAGCAAATATGAAAAGGTCTCAGCTCCGGTTGTTGAAGATCTAGTACTGATATATAACAGGGATTAGAGTAGGCAAGAAGTTCTTGACATGGTAAGCATCTACAGATTGGTATTATCAGTGTTGTACATTCTACACTACAAGCAAAAGTAACACTAATTTCTTCTATGTCCTATGACAGGAGAGACTGATGATGGACTCCTTACAATTCAATTTGTCGGTTCCCACCCATATGTCTTCATGAAACTATACCTTAAAGCAGCTGAAGAATAGACAAAGAAGTAAGTTTTATTGACCCTTCGAACTCCTGTCATTCTGATTGAGCTTTGCCCGATTGAGCATGAAATGCCGAGGTTCCCACCTTCTCTATTAGCAGCAGCTGCAGTATTCAGTGTTATTTGCACTGTGATTTGCACTGTGAGTGGGTCCAAGCATTGGAGTAAGACCTGTGAGGGCACATGATGTAAGTATTCTGTGGAACTCTAATGAAATCAATCCAAAAGTACACATTTTGCCTCTGTAACAATTAATGTTTGTGATTTGGAGGTTCATAATTTCTCCTTCAAATACGTACGAATATGGTTTTCCTTCTAACAATGCTTCGTAAATAATACAAAGTGATCACAA

mRNA sequence

CAAAACTTTTTAATTCCCCGCTTCAGCTCCTTCCCCTTCACTGGTTCGCTGCTCCTTCCCCTTCACTGGTTCGCTGCTTTGATTTTGTTTTCATTTTCCCACTTTTCCTCCTTCCTCTCTCTGGTTCTATGCGCCTTCCCTTTCTTTGGATTCTAACAAGGTTGTTGTTTCCCCACCGTCGTGGCGCCGTCGTTACTGCCTCCTCACGAACTGGTAATCTCCTTAACTCACTTCATTAATTAGATTGAATAAAATAAACATCCCCAATTGGGCAAACCCTAGCCATTTCAATTGATTTTCTCCCTCCTTTTGTTGTTGTACGACGAGCACTCCACCGCCGACGTCGTTGTTGACATGGTGGTCATGTTCTTGTTGCTGGTGTTGGGTTGCCGGTCTCACTTTCTCCTCTCCTTGTCCTTATTTCTTTGCTCCGCTGAGCCACTGCAACCCTGCCACCCTGTACTCGGCCACCGTTTTTTATCTGCTCCTCTACCGCCGTTTCCGCTTAAAACTTTGCAGGCAAGGAGACTCTTCAGTGGTGTGAAAAAATCTCCTGCTAGGATTAGAGTAGGCAAGAAGTTCTTGACATGGAGAGACTGATGATGGACTCCTTACAATTCAATTTGTCGGTTCCCACCCATATGTCTTCATGAAACTATACCTTAAAGCAGCTGAAGAATAGACAAAGAAGTAAGTTTTATTGACCCTTCGAACTCCTGTCATTCTGATTGAGCTTTGCCCGATTGAGCATGAAATGCCGAGGTTCCCACCTTCTCTATTAGCAGCAGCTGCAGTATTCAGTGTTATTTGCACTGTGATTTGCACTGTGAGTGGGTCCAAGCATTGGAGTAAGACCTGTGAGGGCACATGATGTAAGTATTCTGTGGAACTCTAATGAAATCAATCCAAAAGTACACATTTTGCCTCTGTAACAATTAATGTTTGTGATTTGGAGGTTCATAATTTCTCCTTCAAATACGTACGAATATGGTTTTCCTTCTAACAATGCTTCGTAAATAATACAAAGTGATCACAA

Coding sequence (CDS)

ATGGTGGTCATGTTCTTGTTGCTGGTGTTGGGTTGCCGGTCTCACTTTCTCCTCTCCTTGTCCTTATTTCTTTGCTCCGCTGAGCCACTGCAACCCTGCCACCCTGTACTCGGCCACCGTTTTTTATCTGCTCCTCTACCGCCGTTTCCGCTTAAAACTTTGCAGGCAAGGAGACTCTTCAGTGGTGTGAAAAAATCTCCTGCTAGGATTAGAGTAGGCAAGAAGTTCTTGACATGGAGAGACTGA

Protein sequence

MVVMFLLLVLGCRSHFLLSLSLFLCSAEPLQPCHPVLGHRFLSAPLPPFPLKTLQARRLFSGVKKSPARIRVGKKFLTWRD
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo03116.1Spo03116.1mRNA


Homology
[Close]
BLAST of Spo03116.1 vs. NCBI nr
Match: gi|902187796|gb|KNA10988.1| (hypothetical protein SOVF_139320 isoform B [Spinacia oleracea])

HSP 1 Score: 134.4 bits (337), Expect = 8.800e-29
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1 

		  

Query: 1  MVVMFLLLVLGCRSHFLLSLSLFLCSAEPLQPCHPVLGHRFLSAPLPPFPLKTLQARRLF 60
          MVVMFLLLVLGCRSHFLLSLSLFLCSAEPLQPCHPVLGHRFLSAPLPPFPLKTLQARRLF
Sbjct: 1  MVVMFLLLVLGCRSHFLLSLSLFLCSAEPLQPCHPVLGHRFLSAPLPPFPLKTLQARRLF 60

Query: 61 SGVKKSPA 69
          SGVKKSPA
Sbjct: 61 SGVKKSPA 68
[Close]
BLAST of Spo03116.1 vs. NCBI nr
Match: gi|902187795|gb|KNA10987.1| (hypothetical protein SOVF_139320 isoform A [Spinacia oleracea])

HSP 1 Score: 120.6 bits (301), Expect = 1.300e-24
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1 

		  

Query: 1  MVVMFLLLVLGCRSHFLLSLSLFLCSAEPLQPCHPVLGHRFLSAPLPPFPLKTLQARRLF 60
          MVVMFLLLVLGCRSHFLLSLSLFLCSAEPLQPCHPVLGHRFLSAPLPPFPLKTLQARRLF
Sbjct: 1  MVVMFLLLVLGCRSHFLLSLSLFLCSAEPLQPCHPVLGHRFLSAPLPPFPLKTLQARRLF 60

Query: 61 S 62
          S
Sbjct: 61 S 61
[Close]
BLAST of Spo03116.1 vs. NCBI nr
Match: gi|902229937|gb|KNA21651.1| (hypothetical protein SOVF_041300, partial [Spinacia oleracea])

HSP 1 Score: 62.8 bits (151), Expect = 3.200e-7
Identity = 36/57 (63.16%), Postives = 40/57 (70.18%), Query Frame = 1 

		  

Query: 1  MVVMFLLLVLGCRSHFLLSLSLFLCSAEPLQPCH--------PVLGHRFLSAPLPPF 50
          MVV+FLLLVLGCRS  LLS SL +CS EPLQPCH        P+LGHR  S+PL  F
Sbjct: 25 MVVLFLLLVLGCRSPLLLSSSLCICSPEPLQPCHLVLDHRLPPILGHRLRSSPLRRF 81
[Close]
BLAST of Spo03116.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QWA1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_139320 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 6.100e-29
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1 

		  

Query: 1  MVVMFLLLVLGCRSHFLLSLSLFLCSAEPLQPCHPVLGHRFLSAPLPPFPLKTLQARRLF 60
          MVVMFLLLVLGCRSHFLLSLSLFLCSAEPLQPCHPVLGHRFLSAPLPPFPLKTLQARRLF
Sbjct: 1  MVVMFLLLVLGCRSHFLLSLSLFLCSAEPLQPCHPVLGHRFLSAPLPPFPLKTLQARRLF 60

Query: 61 SGVKKSPA 69
          SGVKKSPA
Sbjct: 61 SGVKKSPA 68
[Close]
BLAST of Spo03116.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QUL8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_139320 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 9.100e-25
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1 

		  

Query: 1  MVVMFLLLVLGCRSHFLLSLSLFLCSAEPLQPCHPVLGHRFLSAPLPPFPLKTLQARRLF 60
          MVVMFLLLVLGCRSHFLLSLSLFLCSAEPLQPCHPVLGHRFLSAPLPPFPLKTLQARRLF
Sbjct: 1  MVVMFLLLVLGCRSHFLLSLSLFLCSAEPLQPCHPVLGHRFLSAPLPPFPLKTLQARRLF 60

Query: 61 S 62
          S
Sbjct: 61 S 61
[Close]
BLAST of Spo03116.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RQ55_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_041300 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.300e-7
Identity = 36/57 (63.16%), Postives = 40/57 (70.18%), Query Frame = 1 

		  

Query: 1  MVVMFLLLVLGCRSHFLLSLSLFLCSAEPLQPCH--------PVLGHRFLSAPLPPF 50
          MVV+FLLLVLGCRS  LLS SL +CS EPLQPCH        P+LGHR  S+PL  F
Sbjct: 25 MVVLFLLLVLGCRSPLLLSSSLCICSPEPLQPCHLVLDHRLPPILGHRLRSSPLRRF 81
The following BLAST results are available for this feature:
BLAST of Spo03116.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 3
Match NameE-valueIdentityDescription
gi|902187796|gb|KNA10988.1|8.8e-29100.hypothetical protein SOVF_1393... [more]
gi|902187795|gb|KNA10987.1|1.3e-24100.hypothetical protein SOVF_1393... [more]
gi|902229937|gb|KNA21651.1|3.2e-763.1hypothetical protein SOVF_0413... [more]
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BLAST of Spo03116.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 3
Match NameE-valueIdentityDescription
A0A0K9QWA1_SPIOL6.1e-29100.Uncharacterized protein OS=Spi... [more]
A0A0K9QUL8_SPIOL9.1e-25100.Uncharacterized protein OS=Spi... [more]
A0A0K9RQ55_SPIOL2.3e-763.1Uncharacterized protein (Fragm... [more]
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BLAST of Spo03116.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo03116.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0043090 amino acid import
biological_process GO:0030007 cellular potassium ion homeostasis
biological_process GO:0000911 cytokinesis by cell plate formation
biological_process GO:0006855 drug transmembrane transport
biological_process GO:0006888 ER to Golgi vesicle-mediated transport
biological_process GO:0008152 metabolic process
biological_process GO:0000226 microtubule cytoskeleton organization
biological_process GO:0009651 response to salt stress
biological_process GO:0007165 signal transduction
biological_process GO:0042908 xenobiotic transport
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0000325 plant-type vacuole
cellular_component GO:0005774 vacuolar membrane
molecular_function GO:0005524 ATP binding
molecular_function GO:0008281 sulfonylurea receptor activity
molecular_function GO:0008559 xenobiotic transmembrane transporting ATPase activity
RNA-Seq Expression
   



Co-expression
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Spo242870.65Barchart | Table
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