Spo18988 (gene) | SpinachBase

Overview


Name	Spo18988
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	Super_scaffold_114 : 919036 .. 922170 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AATCTTTTGATGTGAAACTTGGTTGAACATGACTAGCTCTGGAACTGGAATACTGGATAGTGCAAATCAAAGGAGACTCCATGCTTTTCTATTCAAGGTATTCTTTTATTATAGTAGCTTTTGGAAATTGTCTCACCCTTTTGATTTGGTTATTTGTGGTGCTGGAAGATTGGGGTTGGTGTTCTTCTGGTGATGTATTAGCAGCTAGCCTGGGAGTTTTTGATGAAACGTTCTACATGCTAAAGAACAAATTAAAGATGGCTAGTTAACTACTAATGTGCACAATTTGACATTAAACTTCGGTCCACCTTAATTGTTAATTCCCTAGTATCTCCTCAGTTTACCTCTTTTAGAATGGATCAATTTGTTGTATAATATTCTTCCTCCTGAGAAAGTTAGACCATACTGGTTCTACTAAATGAGATTCTACATCCAATATACTATCAGAATGTAAGCTTCAACTGCCTTTTCCTCTCACATTCATCTAAGCCCGTAAAATCAGTCGAGCCAATCAATTCAATACCATGAACACACTGCTGATTAGACAAGCCCCTATAATTTGTACATAATTAGCAGATATTCAGATTAGGGACAGAAACACCCTAATCTGAATATCTGCTAATCTGCAGTGGGTGGCTCTGTTGTATTTTGGAGTCTGGTAGTTAAAGCGTTGACCTGTTAATGTTACCAATGGTTGCATTTCTTATGTCAATAAGTAGTAAAGGCATAGGGAGCTTCCAACTTACTTCTTAAACTGGGTAATAGAGTATCAGATGGTAATGCATGGCCCGTTGTGAAACATCTGAAGGACTACATTTTCGCTTCCACTATTAGTTGCTGGTCCGACTTGGATCAACTATAATTTTCTTGATGTGATATTTTATATACTTGTTACTGAATTTATAGCTGCCAAAATTGTATTACTGATGTTCAGACTTCTAGGAATTCTATCCAGGANTTACTGATGTTCAGACTTCTAGGAATTCTATCCAGGAGCCTAAATAGTGTACTAAACTACTACGGAGTAAATATGCCGAAATCAGAACATATACTTACAATTAATTAGAAAAGTATTTATTTTCGTGAACCAATTCAATAATTTTGATTGGGAATTTTTGCGTGCTATTGTTTACCGTGGACTTCTCTTAATTTATTTTACACCGTGGTAGAAACTGTTACTTACCGTTTGTATATTTTTTTTTCTTAAGGTCCAGGATGCATTTGGAGATAATGGTGGTGGAAGAAAAGAATCAAGTGGTGATGCATAGCTCCTTCAACTATGAAGCTGATATTCTTGAACTTGTATTGAGTGGCCTTTGTTTTAATTTGAAGATGACATTTTAGAATAATAAGTTGGAATTATAATAGTAGATATGGTGTTTTGGGTATTAAATTTGTGTTTTGGAGATACTAGCTAGCTAATTTAATAGTTTGGATAATGTGTAAACTAAATTTGATGATATGATTTGGAGCGAGCTAAGTACGTATTATTACATTTTAAAGGTGTTCATGCTATATATAGTTAATTACATCTGTTTGGTTTGAATTAGTTTCAGGTTGATTTTGCTTCGGGCAACAATGAACGATAAAAAAATAAAATAAAACTATATTCTCGACGCTATATAGTGTCAAAACATGATTCGCGCAAAAAATTGTTGGTAAGCCCGCAAAAAAAATTACTACGTAGATGACCGTCGAGAAATAATTAGCTACACCAAACACCGTCGAGATTCTCGACGCAGATTGGCGCCAAAAATATTCTGTAGACGACAAACACCGTCGAGAATATCGACGTTGCCAAGCGTCGAGAATTTCTCTACGGCCAAATTCTCGACGCTTGCTTTGGGCGTCGAGAAAAATTTTCTCGACGCCTTTAGGCGTCGAAAAATAGCCAAAAAAGCGTCGAAAAATGACGCGTTTTGTAGCAGTGAGAGCTCTATCATTCCCTCCAGATATACCAATATCAACCTATTTCCGCGTCGAAATCCCAGACCAATAACAAACATCAACAAGAGTATCCCGAACCACATTATGCCAATGTTTAATACCCACAATGTCTGCACATGACACCACATGATCACCGACGATATCTCCCGCAAAGACCCTGGAGCAAGCAGAACATGACGCCGTAACAGAGAACAAAGGAACCCCCAATTATTTTATTTTAGCCCGTGCGATGCAGGAATTCTATCAAATTGTTAAGCTAATATAAAATTCCTATATATTTCAACTGTTATATCTTATCATATCCTATATAATAATATAAAAAAAACCATTGGCTTATATGAGGCCTCCAAACCCTCAACCATGCTTTCTCATTCACTCCCTCCAATCATATTCTCCACATTTACAAAATTCAAAATTATAACAAAATATCTATTATGAAGTTAACTGTAGAACACAACCCACATTCCCCTCCCTTACCTAACCGTCAAAAAAAAAACTCATCTATTTCCTCTCTACCCGCCTCCATCAAAGAATAACATTCATCAATCGATCACCACCGTCACCGATCTTCTTGCTGGCAAACAATCCGTGTCATCGTTGTGTTGCCACCGCAACTGCCTTCGAGTGCTTGTCAGGTTAGTGTCTATTTTTATACCTTAAATTCATGTCAATTAGTTTTTATAGGCTATGGAGTTTGAGTTGTGACGGAGGTTTTGATGGGTGATTGGATTTTGTTAGAACATATGCTACTATATTCTCATTAATATCATTGATAGTGTAACGTTAATCAAAGCAAATTGTGACTTGCCATAATAAGTGTGATTGGAAATCAATAGTTAGCATTATAGGCGTGATTTGATTAGCATATTCAATGAAAGTTGTGGAAGGAAACAGTGGCACTGTGGCAAAGCATTGTATTGATTCTCTTGTCTACTTTATAGTCCCTTTATCTAATTCAAGAAAAAAATGGGATGGATTTTTTTAGTTTCTATGTGGAAAAGCACGGGATATATAGAGTATATCTTGAATTACTTTGTCCTTTTCTGATTCAGTAGTTTTAAATTTAGTTTTTGATTGTCGATAATTCGTTATTGGGATGATAGTTGAAGTAACTGACAAATTTATGCTTCCCTAATGGCTAAATTTGATTGTCGTATATGATATCACTTAATATAAAGAGCAACATGA

mRNA sequence

AATCTTTTGATGTGAAACTTGGTTGAACATGACTAGCTCTGGAACTGGAATACTGGATAGTGCAAATCAAAGGAGACTCCATGCTTTTCTATTCAAGAACACAACCCACATTCCCCTCCCTTACCTAACCGTCAAAAAAAAAACTCATCTATTTCCTCTCTACCCGCCTCCATCAAAGAATAACATTCATCAATCGATCACCACCGTCACCGATCTTCTTGCTGGCAAACAATCCGTGTCATCGTTGTGTTGCCACCGCAACTGCCTTCGAGTGCTTGTCAGAGCAACATGA

Coding sequence (CDS)

ATGACTAGCTCTGGAACTGGAATACTGGATAGTGCAAATCAAAGGAGACTCCATGCTTTTCTATTCAAGAACACAACCCACATTCCCCTCCCTTACCTAACCGTCAAAAAAAAAACTCATCTATTTCCTCTCTACCCGCCTCCATCAAAGAATAACATTCATCAATCGATCACCACCGTCACCGATCTTCTTGCTGGCAAACAATCCGTGTCATCGTTGTGTTGCCACCGCAACTGCCTTCGAGTGCTTGTCAGAGCAACATGA

Protein sequence

MTSSGTGILDSANQRRLHAFLFKNTTHIPLPYLTVKKKTHLFPLYPPPSKNNIHQSITTVTDLLAGKQSVSSLCCHRNCLRVLVRAT

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo18988.1	Spo18988.1	mRNA

Homology

The following BLAST results are available for this feature:

BLAST of Spo18988.1 vs. NCBI nr
BLAST of Spo18988.1 vs. UniProtKB/TrEMBL
BLAST of Spo18988.1 vs. ExPASy Swiss-Prot
BLAST of Spo18988.1 vs. TAIR (Arabidopsis)

BLAST of Spo18988.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo18988.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo18988.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo18988.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
molecular_function	GO:0016491	oxidoreductase activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo13926	0.79	Barchart \| Table
Spo18987	0.73	Barchart \| Table
Spo26158	0.72	Barchart \| Table
Spo22616	0.69	Barchart \| Table