Spo10534 (gene) | SpinachBase

Overview


Name	Spo10534
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	Super_scaffold_120 : 140069 .. 141328 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCGTTGCGTTTAACAAAGAGATAGATCAAACTATTGCAGTTGTTGTCCAGATTACAATGAATGGTGGGGTTATTGGGTATTACAGATTGATGCTAGTTAGTCAGGTAAACAAACAGGCTTGACCTTTTCTTTTGAAAGCTCTCCTGTTATATTTACTTTGTTGTATACTGTATGTTTCTTGGAGTAGCCTACTTGGTATTTTGTTAAAAAGTTCGACTATTTTGGCAGAAACTTACGAGTGTTAGAGAATCCGACACGAGTACTTGAGGTGAAATGAAGAATCCGAATTACATTAGCATAATAGCATGTGATAATTTGAACTAAAAGGACAACTTTCAAGGATTTTCCTTGTCGTTTTGACTTGTATGTTAGTTTACCTCACAACAAACCCAGTTGGTTTGAAGGGTGAATAGTTAATGGATATGTTGTCAGAACATGTATCTTGTACCTGTGAGCATAGCATGTGATGGAATTAATTAAAAGGGGAAACAGTAAAACATGGGACTATGGGAGGTATATTGAGTGATGGGCTTTAACAAATACAGTATAGAGAAGCTGCCTGGTCCACGCACTTGTAAATTGTAATTTTTGCTGTCTGTGGAAACACAATGTTGAAATGTCTGATGTGAGTTTATGGTTGGGAGCATGAGGAGACTTGGTCATGTTTCTTCTATGTTTTGCTCTAGAATATTTATAATTTCATGATACTTTATAGTTCTCGGATTATCTGAACTAATTTTCTACTGCTTCTGGCTGTGTAACCTGTTATGAACGATCCAGAACTCTTTGAAAATTAATGTCAGTTTCAATTTTTTGAAAGTATGCATCTATGTTGGATTTGCGCCATTTGCATAAAGTTTTGTTATTGCTGGTGAGGATGGAATTGAGTTGTTACTTGTCAGCTTTCTTACTCCTTTTCTGGTGCCATATTGCTATAGTGCTATTAACTAATATTCTGTTTAGTGAGGGTAACTGTTTTTATTTGCTTTTGTAGGCTGAGTATTTCCGCCAGTTGCTTAAGCCTGTCACGTAGGCTAACAAAGCAATTTTGTGGGAAATTTGGGAGGGGCTGTCTTCATTCATGCTCTTGCAATCTGATAAGGCAGTAAGAAACCATTTTCTGTGTTCTTTTGTAGGCTGAGTAATCCCATTACTTGCTTAAGCCTTTAAATAGTCAGAGTAAAGCGATCTCGTGGGATATTGGGACGTGTACTGCCTTCATTATTGGTTATGGAGGCAGGGACATGAATAAATAA

mRNA sequence

ATGTTCGTTGCGTTTAACAAAGAGATAGATCAAACTATTGCAGTTGTTGTCCAGATTACAATGAATGGTGGGGTTATTGGGTATTACAGATTGATGCTAGTTAGTCAGGCTGAGTATTTCCGCCAGTTGCTTAAGCCTCCTTTAAATAGTCAGAGTAAAGCGATCTCGTGGGATATTGGGACGTGTACTGCCTTCATTATTGGTTATGGAGGCAGGGACATGAATAAATAA

Coding sequence (CDS)

ATGTTCGTTGCGTTTAACAAAGAGATAGATCAAACTATTGCAGTTGTTGTCCAGATTACAATGAATGGTGGGGTTATTGGGTATTACAGATTGATGCTAGTTAGTCAGGCTGAGTATTTCCGCCAGTTGCTTAAGCCTCCTTTAAATAGTCAGAGTAAAGCGATCTCGTGGGATATTGGGACGTGTACTGCCTTCATTATTGGTTATGGAGGCAGGGACATGAATAAATAA

Protein sequence

MFVAFNKEIDQTIAVVVQITMNGGVIGYYRLMLVSQAEYFRQLLKPPLNSQSKAISWDIGTCTAFIIGYGGRDMNK

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo10534.1	Spo10534.1	mRNA

Homology

The following BLAST results are available for this feature:

BLAST of Spo10534.1 vs. NCBI nr
BLAST of Spo10534.1 vs. UniProtKB/TrEMBL
BLAST of Spo10534.1 vs. ExPASy Swiss-Prot
BLAST of Spo10534.1 vs. TAIR (Arabidopsis)

BLAST of Spo10534.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo10534.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo10534.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo10534.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006816	calcium ion transport
biological_process	GO:0010014	meristem initiation
biological_process	GO:0010332	response to gamma radiation
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006302	double-strand break repair
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0006979	response to oxidative stress
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0009616	virus induced gene silencing
biological_process	GO:0010050	vegetative phase change
biological_process	GO:0009630	gravitropism
biological_process	GO:0035196	production of miRNAs involved in gene silencing by miRNA
biological_process	GO:0010073	meristem maintenance
biological_process	GO:0010267	production of ta-siRNAs involved in RNA interference
biological_process	GO:0009855	determination of bilateral symmetry
biological_process	GO:0007267	cell-cell signaling
biological_process	GO:0006486	protein glycosylation
biological_process	GO:0008152	metabolic process
biological_process	GO:0006810	transport
biological_process	GO:0055085	transmembrane transport
biological_process	GO:0006857	oligopeptide transport
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005774	vacuolar membrane
molecular_function	GO:0008233	peptidase activity
molecular_function	GO:0004601	peroxidase activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0035673	oligopeptide transmembrane transporter activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0004518	nuclease activity
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003723	RNA binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo23930	0.71	Barchart \| Table
Spo06962	0.70	Barchart \| Table
Spo24294	0.70	Barchart \| Table
Spo16297	0.70	Barchart \| Table
Spo07015	0.69	Barchart \| Table
Spo23346	0.69	Barchart \| Table
Spo05928	0.68	Barchart \| Table
Spo01841	0.68	Barchart \| Table
Spo16759	0.68	Barchart \| Table
Spo17386	0.68	Barchart \| Table
Spo24598	0.67	Barchart \| Table
Spo02818	0.67	Barchart \| Table
Spo07586	0.67	Barchart \| Table
Spo13970	0.67	Barchart \| Table
Spo15420	0.66	Barchart \| Table
Spo17032	0.66	Barchart \| Table
Spo17391	0.66	Barchart \| Table
Spo19234	0.66	Barchart \| Table
Spo09764	0.66	Barchart \| Table
Spo04265	0.66	Barchart \| Table
Spo02731	0.66	Barchart \| Table
Spo14919	0.65	Barchart \| Table
Spo19287	0.65	Barchart \| Table
Spo17220	0.65	Barchart \| Table
Spo10021	0.65	Barchart \| Table
Spo20826	0.65	Barchart \| Table
Spo02115	0.65	Barchart \| Table