Spo02792 (gene) | SpinachBase

Overview


Name	Spo02792
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	Super_scaffold_122 : 421915 .. 425142 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATAATTCTCATAGTCCCCAAGTGCAAAATTTATCCATCTTTCTCCAAACTCCATCTCAACCCCATTCCTATCCGGTTAGTATGCTACCCAATAGCATAGAGTCTATTACTTCTACCCAACTTCCAGAATTTTCTACCCAACAAGGGTTGGATAATATCGACGTACAAACTTATACTACTACTCGAACTCGAAAACGCCACACATGTAACAAAAAGAAAAGTAGTTGGTTGGACAATTAATGATGATTGTCTTCTTGCCACCGCATGGCTAAGTAGTACTAAAAATAAAGTCGTTGGCAATTCACAAAAATCAGATGATTATTGGATACAAGTGTCAGAGTTCTACAATGAAAATAAGACGGAGGATCAAGCGCCAAGAGAACCAAACCATTGCAAGCAACATTGGTACGTGGACCATCAATGGAGCAATTAATAAATTTGAGAATCATCGAAGACTTCGAAATAGGGGAAGACATCACAAATTGCAGCAGAACTTGGTCGAGCACTTGTGGGGGCTTTTCGGAGAAAATGATAATTAATCTAATTCATTTATGCTTTAAGTATTTTTAATGAAATTTTATGTATTTCAATTTTTTAAGGAAAATTTTATAATAATTTTTTTCAATAGTTATATTTTTCTCTATTTTGATAACATACACGGGGATATTATTTATTATATGCATAAAGAGTAAATTAATATGAGTTGGAAACAAAATATGATACACGTTTTAAGAAGTCTTAAATGAATCTTAGGATTGAAGAGTTAAAATTGGTTGAGTCGTAATGAGTCTCAAAATATTATAAAATATAAAAATAATATTAAATGATAGTGGAAAGCTGACATGGCATATGGAAAAGTCTTAAGACAAGACTCCCCTTGATGTTGCTCTTATCACTTAAACCACAATCTATATTTCTCTCTCCGTTTATTCGACCTCTAATGTATGTCCATGTTATACATTCACTCTATAGAGCATTGGGTATCATTATTGATTGTAATTTAATGACTACTAATTGTACAAATATAATATTAGTTTCCTTACAATTATACATCAACATTTGGTGGATCTCAATCTATCGTTTAGTTTTTTAAGTTTTCAACCTATGCCTTTTATTGCTTATTTTTTTCACAATTATTTATTACTCCATTATAACGTACTATTTAAGTTCTTTACTTTTTTTATAACTAATTTATTGTAGAAGCTAAAAAGATGATTATGATGTTCATATGCCATTTGCTACTCCTATCGGTTTAACCTTTTTCACATTATGACCCATATTTCTGCTACAATTTTTGATTTTCTTTTATCATATGTTATCCATAAAAAACTAATGCATCCAATAAAGATTATATCATTCTCATCCATCATACAATATGAACTTATTTAAAATAAATTTTAAGATCATGTATTCAGCGCGTAAAACTAAATTATTTATGACTTATTGCTTTAAGAAACAACGTTAGAAAAAATGATCGACAATCTAACATTTTTTTTATCTACTATATATAATTACAACCTAACATCTATAAAATAAGAAAAAGGTATGTGACTAAAGAAATTAGATTTTTTTAATTAATTAATATTTAGTTCCTGTTCGGCAAAATTAGCGCTAGCGGGTAGCGGTTAGTTGTTGAGTAGCGGGTAGCGGTTAAAGTAGCGAGTAGCGGTGAATAGTAGCGGGTAACGGTTAGCTGTCAAAGTGGCGGGTAACTAATATGAGTGTTCGGTAAAAGTAGCGGTTGATATTATAAAATAAAATTAAAAGCAAGAATATTATTTAAAACTTTATTATAAATTTGTCAAACGCTACCTTACTTTAACAAACACTAACATATTTTACAAGTAGTGTCTTAACTAGGTCAAAACGCTACCCGCTACCTCAAACGCTACCGCCGAACACGCCCTTAGACCTTAATCATGATGAATAATATATACCATTATAATTCAGATAATTGTTAAAAAGAAGTCATTTTAAGATAAAAATCACATTTGTTGCATTGCATTGCTATAGATCTTTTAAACCATTTTCTTAGTTTTCGATTAGTAGTTTGTGACGAAGTCTTGAAATGGGTATTAAGAAATTGATTAAGATGCTTTCATAAGAAGAAAAAAAGGTGTAATTATTTTACGATAATAAATATTAATTTATTAATATCGGCTAATACTCCCTCCGTATTTATTTAAGAGATACACTTGGCTGGGTACGGGTATTAAGAAAAAGAATTGAATGAAATAAATTAATAAAACAAGTGGGGTTGGGTAGATATTTTAATAAGAAAAATATGTGGGGACCATGTCATTTTAGGGAGTAAGGGGTGGGGGCGGGGTGTAGATATTATTTAATTAGATGGTGGGGTTGATAAGTTACTAAAATTTTTAGGGAGTAAGGGGTGGGGGTGGGGTGTAGATATATTATTTAATTAGATGGTGGAGTTGATAAGTTACTAAAAATGACAAGTATATCTCTTAAATAAATACGGCCTTAAAAGACAAGTGTATCTCTTAAATAAATACAGAGGGAGTATGTGTTCTAAAAATTTACACACACATCGAGTGTATAAAAGACTAGTTATAAAGATGCGAAACGAGTCGCGTGATAAATGCAAAGCCATGGTCACGTACTCACGTGTGAAACAAGTAGTTGAATGTTGGTAAATGGTAATATATATTGGGCCTAAATTGAGCTACCCTTCTTAAGTTGGATCCTCCAAAATCAGAGAATCCAAATTCAACAACTGGGGTTCTGATTTTTACTTCTTCCTACTATAACTCCCAGTCAACCCCATTTGTTTTTCTCCACAAATTCTCAGATCTCACCTTCAATTTCATCCTTTCAGGTTTAATTTCAATCTTCTCTCTCCACCTTTTCAATTCAGTGATTGATTCGTCTAATCTGGTTTTAGGGTTTTCAGTTCAATTCAATTCAATTTCTTGCAGAATCTTCAATTGAATCCCCGATCAATTAGAATTTGTGGTTGTTGGGGGTAATGTCTAATTGGGGTTTTGTTAATTAGGGTTCTTGCTTATTGAAATTCATCGTTAATATGTTTGGATTTGGGATTTTCAATTGAAGCCCTGATCAATTAGAATTTAATCTTATTGGGGGGAATTTTAATTGGATTTTATTCATGAAATTGAAATGTAATCGCCAATCTATTTAAGCTTTTTTTGGTAATATCAAGTAAATTGATGACTTTCTTCTTCGAATTGCGTCACAGGTTGA

mRNA sequence

ATGCATAATTCTCATAGTCCCCAAGTGCAAAATTTATCCATCTTTCTCCAAACTCCATCTCAACCCCATTCCTATCCGTTGGATCCTCCAAAATCAGAGAATCCAAATTCAACAACTGGGGTTCTGATTTTTACTTCTTCCTACTATAACTCCCAGTCAACCCCATTTGTTTTTCTCCACAAATTCTCAGATCTCACCTTCAATTTCATCCTTTCAGGTTGA

Coding sequence (CDS)

ATGCATAATTCTCATAGTCCCCAAGTGCAAAATTTATCCATCTTTCTCCAAACTCCATCTCAACCCCATTCCTATCCGTTGGATCCTCCAAAATCAGAGAATCCAAATTCAACAACTGGGGTTCTGATTTTTACTTCTTCCTACTATAACTCCCAGTCAACCCCATTTGTTTTTCTCCACAAATTCTCAGATCTCACCTTCAATTTCATCCTTTCAGGTTGA

Protein sequence

MHNSHSPQVQNLSIFLQTPSQPHSYPLDPPKSENPNSTTGVLIFTSSYYNSQSTPFVFLHKFSDLTFNFILSG

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo02792.1	Spo02792.1	mRNA

Homology

The following BLAST results are available for this feature:

BLAST of Spo02792.1 vs. NCBI nr
BLAST of Spo02792.1 vs. UniProtKB/TrEMBL
BLAST of Spo02792.1 vs. ExPASy Swiss-Prot
BLAST of Spo02792.1 vs. TAIR (Arabidopsis)

BLAST of Spo02792.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo02792.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo02792.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo02792.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016043	cellular component organization
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0010228	vegetative to reproductive phase transition of meristem
biological_process	GO:0009987	cellular process
biological_process	GO:0090503	RNA phosphodiester bond hydrolysis, exonucleolytic
biological_process	GO:0007033	vacuole organization
biological_process	GO:0048193	Golgi vesicle transport
biological_process	GO:0007030	Golgi organization
biological_process	GO:0000902	cell morphogenesis
biological_process	GO:0016049	cell growth
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005777	peroxisome
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0004535	poly(A)-specific ribonuclease activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0047617	acyl-CoA hydrolase activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo15639	0.76	Barchart \| Table
Spo08850	0.76	Barchart \| Table
Spo01261	0.76	Barchart \| Table
Spo25107	0.74	Barchart \| Table
Spo14881	0.74	Barchart \| Table
Spo25483	0.73	Barchart \| Table
Spo08713	0.73	Barchart \| Table
Spo27081	0.73	Barchart \| Table
Spo00863	0.73	Barchart \| Table
Spo11918	0.72	Barchart \| Table
Spo04907	0.72	Barchart \| Table
Spo16911	0.72	Barchart \| Table
Spo18575	0.72	Barchart \| Table
Spo14942	0.72	Barchart \| Table
Spo15873	0.71	Barchart \| Table
Spo09772	0.71	Barchart \| Table
Spo10815	0.71	Barchart \| Table
Spo21214	0.70	Barchart \| Table
Spo00748	0.70	Barchart \| Table
Spo25043	0.70	Barchart \| Table
Spo05728	0.70	Barchart \| Table
Spo22811	0.70	Barchart \| Table
Spo21691	0.70	Barchart \| Table
Spo14225	0.70	Barchart \| Table
Spo13184	0.70	Barchart \| Table
Spo14087	0.70	Barchart \| Table
Spo08645	0.69	Barchart \| Table
Spo20544	0.69	Barchart \| Table
Spo01925	0.69	Barchart \| Table
Spo09605	0.69	Barchart \| Table
Spo11923	0.69	Barchart \| Table
Spo09671	0.69	Barchart \| Table
Spo04863	0.69	Barchart \| Table
Spo19245	0.69	Barchart \| Table
Spo23935	0.69	Barchart \| Table
Spo02890	0.69	Barchart \| Table
Spo06506	0.69	Barchart \| Table
Spo05093	0.69	Barchart \| Table
Spo14667	0.69	Barchart \| Table
Spo16996	0.68	Barchart \| Table
Spo22955	0.68	Barchart \| Table
Spo08521	0.68	Barchart \| Table
Spo05135	0.68	Barchart \| Table
Spo09290	0.68	Barchart \| Table
Spo22760	0.68	Barchart \| Table
Spo09499	0.68	Barchart \| Table
Spo21723	0.68	Barchart \| Table
Spo17989	0.68	Barchart \| Table
Spo16240	0.68	Barchart \| Table
Spo12505	0.68	Barchart \| Table
Spo19965	0.68	Barchart \| Table
Spo23402	0.68	Barchart \| Table
Spo24613	0.68	Barchart \| Table
Spo08494	0.67	Barchart \| Table
Spo01686	0.67	Barchart \| Table
Spo01858	0.67	Barchart \| Table
Spo03107	0.67	Barchart \| Table
Spo03607	0.67	Barchart \| Table
Spo04838	0.67	Barchart \| Table
Spo07619	0.67	Barchart \| Table
Spo11854	0.67	Barchart \| Table
Spo15881	0.67	Barchart \| Table
Spo17209	0.67	Barchart \| Table
Spo17726	0.67	Barchart \| Table
Spo19870	0.67	Barchart \| Table
Spo21055	0.67	Barchart \| Table
Spo26430	0.67	Barchart \| Table
Spo00536	0.66	Barchart \| Table
Spo11482	0.66	Barchart \| Table
Spo21925	0.66	Barchart \| Table
Spo22028	0.66	Barchart \| Table
Spo09350	0.66	Barchart \| Table
Spo00344	0.66	Barchart \| Table
Spo08245	0.66	Barchart \| Table
Spo06293	0.66	Barchart \| Table
Spo23549	0.66	Barchart \| Table
Spo05405	0.66	Barchart \| Table
Spo24808	0.66	Barchart \| Table
Spo02932	0.66	Barchart \| Table
Spo15461	0.66	Barchart \| Table
Spo14537	0.66	Barchart \| Table
Spo17391	0.66	Barchart \| Table
Spo27198	0.66	Barchart \| Table
Spo13774	0.66	Barchart \| Table
Spo13614	0.66	Barchart \| Table
Spo18589	0.66	Barchart \| Table
Spo18800	0.66	Barchart \| Table
Spo13029	0.66	Barchart \| Table
Spo19850	0.66	Barchart \| Table
Spo27004	0.66	Barchart \| Table
Spo12999	0.66	Barchart \| Table
Spo20187	0.66	Barchart \| Table
Spo11623	0.66	Barchart \| Table
Spo17498	0.65	Barchart \| Table
Spo17610	0.65	Barchart \| Table
Spo00526	0.65	Barchart \| Table
Spo11558	0.65	Barchart \| Table
Spo21494	0.65	Barchart \| Table
Spo24993	0.65	Barchart \| Table
Spo10940	0.65	Barchart \| Table
Spo05073	0.65	Barchart \| Table
Spo19738	0.65	Barchart \| Table
Spo06164	0.65	Barchart \| Table
Spo17032	0.65	Barchart \| Table
Spo24736	0.65	Barchart \| Table
Spo13875	0.65	Barchart \| Table
Spo23219	0.65	Barchart \| Table