Spo07980 (gene) | SpinachBase

Overview


Name	Spo07980
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	tetratricopeptide repeat (TPR)-containing protein
Location	Super_scaffold_124 : 898267 .. 910309 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTCAATAAAATAACAATTGATAACCACACTACTACTTATCGCATTAAACTGTGTATCCAGGAGAGTGTAACAACTATTCTGGGACGGAGTGAGTATCTAAAAATAAACACCAAAAAGCTAGTGAGCCACGGACCACGGTCAATTAACACTTAGCGACCCCACCATTTCTGGTCAGGATAACACATTACACAACCCCTATTTCCTCTCTGCGTTTTTTTTGGTGGTAAATTCAATCAGATGGCAGTGGCTTCACTTGTCCTCCATCACCGAATCCTCTGTTTCTCAAATCCAAAACCCAATCATCATTCAACAATCAGTAAAAGAAGACAATGGTTCTTCAACTCCATTCCCAAGTATTCAACTGCCCACATAAGGGTTCGATTCTCTCTCATCACTTGTTGTTCTTCGTCTTCACCACCACCGCCGGAGACGGCTGCGCAGACGGCGGAGTCATGCGTCAACACGGGTCTCTCTCTCTTTTCTAAAGGACGGGTATGTCTGTCTGTCTGTCTTTCATTCATTTCAATGATTATGTTCTATCTTTTATGGGGTTCTGTGATGTGGGTTTGTTTCAATTTTGATGATTATTTGCTTCCTTGTGGAAATTTCATGTGAATATTTTTTTATTTTGCCTTGCTTTAGAATTTCGGAATTGGAATTTTGTTTTCTGAGTTGAATGTTTGATGGACTTTAATCTGGTTGATTGTTCAGTGAAAGAACGTGGATCGGCTTTGTGATGGATAAGAAATGAGCTAACTTGTTCTAAATTGAAATTTCAAAAATTGAAGTCCACAACTTGGTACTGGATGCTTCAAAATAATGTTTAACTATATGAAAACATGACCAATGTTGTGGGGAAAGGCTCCTTGAGTTCTTTGGCCATCCAAATTCGACAAAATCAACAATTATATGGCTTTGAATTTTCCATCTGTTGTTGATGTTCTAACTCCTTATAGTAGTAAAATGCAATTGATACTTGGAGAGGACAAGGAAGAATAAGCTCATCGCACCAAAAGTGGACCTAAGTTTGATTCACCCCTGCAGGAGCACACAACAGATTTTTGGTGCCAGTTTAATTTACTTGTCACACTTGAATTCAAATAACCAAATGAGGCAAATTTTCACCGTAGTAACCTGGTACGTTGAATCTCAAAACATCAAGAGTCAAGACAAAGTGAAGTACTTTGAATCTAAGGTTAAAAACACTTGATGAAAATGAAGTCAAGACTAAGCTTCTTATTAGTTTCTCAAGCCACCTAGGAAGTTTTATCAAAACTCCATCCTTCATGCATATCTTAGACATGTAGGAGTCTAGGACTACTCGAAATATATACTTCTTATTCTTGATTTTCTTTTTGTGTGGAAGTAAGACATTCTCCTGAAATTTTCCCCAAAAGTCACTTGATCATATAGTTTTAAGTCACACACTAGACCACTACCACAAAGTATTAAGAAGCGCACCATTAAGGCACAAAGCTCACAGCATAACCATCTGTAGGGCTAGTTCAGGATCTTTACGTACACAACCTTACTATCCTGCTCAATAATGTTTCCCAAATTTATGGCATTATGAGGCATTAATATGAGAAATTCTGCGAATGCCATAGAATATTTTCAGTAGGTGTTTCAGTTTTATAGTATTCTTAATTATGACTTAATATTTAGTCAAAGATTTGTGCCTTATTTGGTTATTCCTCCTAAGAACCCACTTTTGCCTCTTGCCTAAAGTCAAGGCTATAGGACCTCTATATTCCCGGTGTGTCTGCGTTAAGCTGCTTTAAAGTGTCATGCCCTATGTCTTCTTTAAGATACTTTACTTATCGTATTCACGTAGTTTGTTTTTTAACAGTTTCTATGAAATGCTTCGTAAGATTTATCTATGAGATATTTGTTTTTCTTGCTCATATTTGTTTGCTAACTGCTTCTTCCTTGGAATTAACCATTATTGGTGAGCATCTGTCTATTTATTTTTCTTTTTTGGTGTTGGAAGAAAGGGGTGTGAAGCCGCAGTTAGAAATAAAAATAGATCTAACTTTTCTGGGTACTTCAATAGAGTGGCAAACTAGATTAGCATTTAGAGCACCACCTCTTGTTTTGTGAATGGCTTCCCATATTGGCATATTTTATGTCCTAATAAAGCAAATGATCAGTACTGGACTTGGATACATCAGAAATGATTTGAGAATGGATACTCACTTCAAGAATCAGTAAAATACTGTAATGTAGTAGTTGGGATGAGGATACTTCATCACTCATGAGTCTTATGCAAGTACGTCATCCAAACAGTTTCTCCCGATGTAGAAAACCTAGACAACTCCAACCTCATTTTGTGTAAAATTTTGTTCTTGTTTCACCTGTTTTGGATCATTTAGACTTGATACCATTGGTTGGTGCTGATTCTGTGGGAACAAGAATACAAATTCGGCTTTCCCAATTGTTGGCTAAACTCCAAAGTCCAAAACCATCTATGTATACCTTTCCCAGAGTTTGGATTCTCATAATCATGGTACCAGTCTACTTTTGATCTTCAGATCTCAGTGAATCAGTCTTGTGATTAAGAATTCATATACGCACAGGTGCTTAGTTCATTGGATTTGGTTCCTCTTAATGAATTAGAGCCTTAGTGGTTATCTAAACACAAGCCATTGCCTTTTTTCACCATGCAATCAGTGAAGTTAAGTAATGATGAACATAGAAGCACCTATTTTCTGCCATGCAACTTGTGGAAGCTAAGTGTTTCTCTTAACGCTACAAGAACGACAAAGCATTCATGGAACAACCAGTTTTACCATGCACATAGTATAACCTCACTCAATATTTTCTCACTCATAGGTCCCCTATTGAGCAAAAAAGAAAATTTAGCCTTGGTTGTACACTGGTACGCACAACTTGCTGTACAATACAAATTTCCTCACAATGGTAATCACCCATTACAGGTCCCACTTGCCATTGGGAGCAGCCGGCTGGGGAGGTCTATGTGCATAGCCTTACTCCTAACGGGTATAAGCCAATAGAGAGGCTGGTCATTCCTTTATCTTAGCTACTTAAGTGGTACCTCTTTATGTGTCGCAATTTTGACTTTGGAATCTATTGGGGTATTTGCTCATGGTTGACCTAACAATCCAAGTTCTAGGTCTGTCGTGAATTCTTGATTCCCCAATGGAAAGAGTATATGTGTGTAGAACTGTAGATATTCTTGGTTCCCAAGTCTAGACCTTGGGATTCCAAAATCATCTTCTGAGTCTCTGACAGTAATTCGTTATCATGCACCTCCATTCTCCTTTTCAGTCTTCAGTTTTAAATTGGTATTGTTACCTGTTGCAACAAGTGATTCTCATTTTTAGTTCATTGAATTGAAAGTTGAAGCATTGTGTGTGTGACTGATAGTGGCCACTTGCATTTTGCAGGTTAGAGAAGCTCTGGTACAATTTGATACAGCACTTAGCTTAAATCCTAATACTATGGAAGCACAGGCAGCACTGTACAATAAAGCATGTTGTCATGCCTACAGGTAACAAATTGATCTTCCTTGTGATCCAAATTTGAATAAGAGTGCTTCAGAACCTGTTATCTAACTCGCCTACAGGTTTCAGAAATCTACATTGAGAGTTTATTAGTTTTCTCCATTACACAATGCGGGGCGTTTTATGATTGTAACTCGTAGGTTAAGAAGCACTTATTTAGAAAACAGAATATCAATTGACTATTGTGCTTTTTTTATTAAATTTTGTATAGAATTTCCATAAGAGAAAACAAGGGGAAATTTTTTAAAATATAACAATAATTAGGCCTTGTTTAGTTCACCTTATTTCAAGACCTTATTATTAAGTATTTCGGATAAAAAAATTACTGTAGGTTGGATTAGATAAGTATGATAAAAACAAATCTTGTGTTTGTTTATTTTTTAAAATTTTATTTATATGTAAGTTAGTATAACAAATTAACAATGATATATACTTAAATAAGAACAGTTTTAAGTATGATTTATGACATTAGATATTTAGATCTTGTAATAATAATCATAGTTTTTATTTTTGTTCTTCGTTATAAAAAAATTTATCAGTTCAGAATTGAAAAAATAAGTTCAGATTAGAAGAATAAAGTTCAGATAGGGATGATTCAGGTGAGCTAAACATCGCTTAACACATTGATTTTTATCATGCCTGACATTTTGATAGATTAAGTATAGTAGAACTAAGTTTGGGTTGCTTATATAGAGAGCAATGACAGAATTATTGTGCGGTCATAGTGTGCCATTAAGGTTAACAGGAGAAATTCTATAGGATGGAAACTAGACCGACAAAGTTGCGTATGTTGGGAATTTGGGATGGATGTGTAGGAACACCTTGAGGGATAGAATTAGGATTGTAGATGTTCAGAAGAAAGTTGGAGTTGCCGATATTCAGGATAAGATAAAGGAGAATCTACTATGCCGGTTTGGGAGGTGTCGACCAGATGATGCTCTATAAGGAAGTCGAGGAAGACCAAAAATGACTTGGATGAGGAAAGTCAAATATGACATGAAGAAAGTGGCTTTACAAGAGTATGGAGCACTAGATAGAAGCAACAGGGGAAGAGGGTCTTTGTGGGGTTCATGCATCCCATGATTCCCATCCTTTTGGGAATAAGGATGAATTGCCTGTATTAAACAAGCTTATTGTGTGTGCGAGTCTAGTGAAGTTTGAATCTCGAAAAAAATCTTGAATCATGGGCAAATATTTTATAATTCCCCATCTGCTATTTTTCTTTTTCAGGCATACTTTATGAAGGCCTTGGTGCGTTATAAAAGAAAGTAGTACATTACAATGATCATATGTCTTCACTAAAAGTAGTTCATAAATTTGCAAGCTAAATTTTTTAATGTTCAAGTAATATCCATTTGGAGTTGGGTGGGGATGGGTGTTATTGTATTTGTAGTAGACTTAAAATGCCCTTTTTTAATAAAATATAAATGAGAATTCTTATTTTCTAGCATGTCATCAAGTCGTAAAACCACCCCTGATACATATTTGTACTTCATTAAGTGTGTAGGTCTATTTGATACTTTGAGAAGCCCTTTATTGCTATGTGTGTCTGACTGAAGGTAGTAAAACTGATTGTCTTTGATAGGTTCCATTTTTTTTGTAATGTTTGCCACTTTGTTCAATTCTTTATCGTCCAAGCAATCATTAGTATAACCTCAATGCCTGTAAAAGCACACATGTCCATGGGCCATGACAAGGTGGAGGAGGTTGAAAGTATGCAGCTTCACATCTGCTGCCCGTTAAGACAGAAGCAAACAGGCGGTCATTTTAATTTAGTCCATCATTATTGGAAGAATAGTATTTGTTCTCCTCCATTGTAATTGATCACCAAATTCCTGCCTATTTTCACTTTGTTTTCTAGATTAGAGTTCCGTAACTTGTCATAATTTGATAGCCTTTATAATCTTTGTACTACCTTCTTTCCTTGAAGATTTAGCCATTGCATTTTACGTGGTCTACAATGCACACCTTTGCCATTATTATCTATAAAGCTATATTTTAAAAAGTTATTATGAAAATTCACAGTGAAAGGGATCTAATCAAATCCCACTCTATGTTGGCCAGACGGATTTAGGTGTCATGCCCGACAAGGTGTCGGAGGATCTGACATTAGATACAAAATTTTGCAGACACAGCGACACGGTCAAAGGAGTGTCTTGACTAGTTCTTTAGGCGCGGCTATTGTATAAAATATCGGAAAAATTCTTTCTGACATTTGTTTTCATAAAAATAATTAATTATAAAATAAAAGTATATAGAAATAAAATCAATGAGGGAGATAAAAACAAGGAAGAAATATGGTGTACAACTATGAGTTACGGAGTACGGCGTATATTACATGGGTTATAAAAATAAAAAATAACAAAGGAAAGGAAGAAGAAGAGGCCGTATGTTGCGGAGGAGGGCAGTAAATTGAACTTTTTGATTCTCTTTTTCTCTTCTCCCATCTCGACACTTGATTTCGGATCCTTTTTCCTCACGGGTGTCGACACTTCTCAAGGCACTTGTAGAGTGTCATGTCGCATTGACACTCGACACCCCTGGTTAACCAGGGTGTGAAAGTAACAAAGATCTCACTTGATAATATTTTATCTTGTTTATAAGCTACCAAAGACGGTCAAAATTTTCTAACTTCGACCATTTCAATAAATGCACATCTTCAAGGATAGAGGTAGTAGTAGCCTAGTATCCACTAAGATGTCGTATACTGCATGGATACATACTTCAAATCTATGGTCATGACTGCATGGATTATATCCGATCCAAAGGTTTCCTTTCTATAGGACTAGCTACCAGTCATATAAATTATTATTCTATTAGAGATGCTTTTAAACCTAAGTTGGAGAAGCTTCAAGAAATTCATAACAGCATGAACCCCTGTGCTCTTATGTTCACTAAAAATCAGTATTTTAACTACAATCAGATTTAATCAGTATAATCGGTATTATTCAGTAAAAATCAATTTTAATAAATAAAAATCAGTGACCTTTTACGGAGTACTAATGAATCAGTAAATATCAGTTTCAGTCAGTAAAAAAAATGTATTGATCGATGGTACAGATATTTTTAGTTTAAAAAAGTAGGAGAAGAGAAGAGAGGGTATAAGTACCACAGACCATATTTACTGGAAATGCCATGACTTGCTACTAAACTTGCTGATTGATTCCCTTTAAAAGAAACACATATATTGTTTTCTTCCTTCTACATACAATTATAAAATAAAAAGGTTTCTCCTTTTATTTTGGTTCCCAGATTTATCCTGGAAATACGCTTCTTGAAGATTATCTGATGAAGTAACTATTAGTATTAGTAGACATGAGGAAGAAGAACTAGGGTCATCTGAGTAATTGAAACTCTGATAATCAGTACAATGTGTCCCTTTTTGTGCATGCTGTTGTTCTCCTTCTTGTTTAATCAGTTGCTTTGTGTGAGTAGCTTCTTTTTTTTCCTGTGCGAATGGGACTCCAGTGTTTTAAAGATCTTTTGGATATTTTTAGTCAAATCTGTTAAATTGATCTTTTAGTTTCTTTCTCTTGAGGCAGGGGGGAGGGAAAGCAAGCTGCTGAGTGTTTGCGCACTGCTCTTAAAGATTATAACATCAAATTTGGGACCATCCTCAATGATCCAGATTTAGCCTCCTTCAGAGCTTTACCAGAGTTCAAGGAATTACAAGAAGAGGTTTAACTGGTCAACTTTAGTGACTGACTTCTTATTAGATACTGCTTGTTTGGGCTTCAATTGTTTTACTAAATTGTTCTTTTACTCTTTGGTTCTTTCCAATCATACAGGCGAGACTTGGTGGTGAGGATATAGGTGATAGTTTCAGGAGAGACCTCAAGCTCATTAGTGAAGTCCAAGCTCCATTTCGTGGAGTTCGGAGATTTTTTTATGTGGCATTTGCAGTAGCTGCAGGAATTTCCACTTTTTTCACAATTCCCTTGCTGTTCCGTGCAATTCAAGGAGGTGAAGGTGCTCCTGATCTATTAGATACTGCTGGAAATGCCGCTGTAAATATTGGAGGTAGATATGGAAATTTATTTCTATATGTGACATACATTTATCCAGCACGTGTTACCATCGAACACAAGGCTTTTTAACTGATACATAGTCATGTTCACACTTCACAGAAATGAGCTTGCTTGACTGTTTTCATAGAGTATCCTTTACAAATTTCTTGAAAGTAATTAAGTTATAGAATCAGCATTGTGTAGGCTTTGCTATTCTGGTGGCACTGTTCATCTGGGATAATAAAAAAGAAGAGGAGCAGATTGCACAGATATCTCGAGATGAAACTCTGTCCAGGTTACCTGTACGTCTTTCTACTAATCGGATTGTTGAATTGGTGCAGCTACGGGATGCTGTTAGACCGGTTAGTATTCATTATCTTTATGATTAACATATTATTAGGTCCCACAAAAGTGGATTTAGAGAAGATAAATATGAATAAAGGCTGACATAAATGGAATAAAGTAAAAGAGAACGGAAAGTGAGTAGAACTTAGAAGAACGGAAAGTGAGTAGAACTTAGGAAAGCGGAAGGTCCTATGAAGTAGCTGTCCTGGTGAGGGATTTGCAATGTAATTCCCTTGTTCTTTAGCCGTGTACATAATGTGATTAGCAAAATGGTCTTCGCTCTTTACCAAAAAAGGAAGAAAAAAAAGGGCTTGACTTATGTTTTACAATGGAATGGCATGAGTTTTCCCCCTTTGTGTATCATCCACCTAATTCGATGTATGCCTTTAATTAGATGTATGATGTTGGAGTTTCTCTCTTTTAGTACCCTCAAAGCTCTGACTAACTTTAATATTAGGTTATTCTGGCTGGCAAACGGGAAAGTGTTTCTTTGGCAATGCAAAAAGCTGAAAGATTTAGGACTGAGCTCCTTAGAAGAGGTGTTCTTCTAGTTCCTGTCATTTGGGGTGCAGTTGAGGCAGCTTCAGTTGAAAAGAAGGGCTTTGGGAGGTCTGTGAAGGCCGCTGCTTCTCTTCCCTCTATTGGAGTATGGATTCCTCTCTAACTTACTTTTAAATATTCTACACGTTAAGGATAATTTTTCTCCTGAAAAAGCGAGGATTTTCTTTATGAGCGTGCAACTATGGTGATGGTGTGCACGTTTTGGTCATTTCTAGTAACTAATTTATTCAGAAAGGATATTGTGTTTGCCATCAATATTCAGTGTTACTTGACAAACCTGCTAAATCTTGAGAGTTCTTTTGTGTTTTTAATTTATTTAGGATGACTTTGAGAATCGAGCTCAATCTATAACTACGAAATCAAGGTTGCAAGCTGAGATACGTTTCAAGGCTGAGGCTGTATCCCCTGCGGAATGGGAAAGGTGAATCTGCTTCCTGTAATTAAAAATTTCCTACTTGTTATCCCTTATCAGCAACATAAGAAGTGAGAATATAACCACAGGAAGGATATGCCACATTGTGGGTTTTGCTAGACTTAACTTGTCTCGTATAAAGTAACTATTTTATGATTTACCTTCCAATAAGTTGAATATCTATTGTTGTCATATTCATTGTATTAAAGACTTATTGTGTTAAAGACTTAAAGTTCATAATAAATGCAGTTTACGCTGTAAATTAGTAACTCTTCAATATGTTAAGAGTTAATTGAAATTTACTAGTTTCGTTGAAGCTTGCTCAATGTATTGTGCTTCTAGTCATGTATCAACTAGGTGTTTCCATGTAAAACATCCATGCCGTGCAATATTTTTGCCTCTCTTAGAAAAGGCTTTTCTGTACTATATGATATCTGATTAAGTTCAATCGAAATTAAATTAAACATGCATTATGAAAATTTAGAAAGATACAATTTTCTTTGGTGTTTCCAGCATTTTGAGCCATATCTTGATATTTTTTTTAAAATACTTCATACACCTGGAGTTTTGGTATATTTTACTCCTCTCTTCATGCCTCTTAGGCTCTTACAAAAAGAAGTAACTTCTCTTATTCTTTATTCTTATCTTTAGCATGTATTTCTTCATCGTGAAAGTTGAAATCCAGACCTATCTTCACTAGAAGATGACAAAATAGTTGACTTCCTATGAAATGGATTTTTGATGCATTGTAATTAATGAGAATTAGTGGATACGGTCATACGAGGGAATGGGATGGGAATTTTCTCAGCTGATGAACTTTTCAGAAAATATGCAGTCCTCGTGGTCAGCCTGACCTGATTGACATCTAGAAAATTCATATCTAAAATTTACTCTTTAGTTAAATTTCTGTAACTAAGAAAGATCTTGTAGTACAGTACTACAGTAGTACTTGGTAAGTCCCTTGTTAGACTCTCCTACCTACTAATATGACGTAGGCCCATCCATTCTAATAATACAAAAATGGAATAAAGAACTTTAGAAGAACTCCCCTTCTTTTTTGAAGGATTGAGAAGAACTCTCTAATTTGCAGTATCTAGTCTTTCTTGTCTCTGGGCCATAAATTCAATTTTATACAATTATTGTCTGCTTATCTTTCCTAATTTACTTCCTCCCCACTCACCAACTTCCCCAGATTTTAACAAAATAATGGAAAGGAAAATAAGAATGAGGAAACAAGCACATAATATATTTGAATTCAGACCCTATCTGCTTATCTTATTCATATTTCAGATGGATAACGGACCAGCAAAAATCAAAAGGAGTTACTCCTGGCGAGGATGTATACATAATCCTTCGTCTCGATGGTCGAGTCCGTACGTCAGGCAAGGTTAGTGTTCTTGGTGGATTATCTTATTCAACTCTGCTTTCTGCATATATTTGATAACTAACATTAAATGTTTTTAAAATGGCTATTTGAGGCATTTTAGATGCTATTTAGATATTTGAAATTACACTTAAAGCAAAGGTAACTAAATTATTTTTGCCTTTTAGGAAATTAAAAAAAAAAACTTTGCCCCATTGTCAAGGTGAGCCCATACGTGAGAGGGAGCGGAACAAGGGAAAGGGGAGCCCTTTCTTCATTGTATAGGAGTTGAGTATCCCTCTTTGGAAAATGAAGGTCGTACAGGGGTTTACAGCCATCCTGAATTGCTTAAATCATTAGCTGCAAAGAAAGGACGGAGGGAGGGAAGAAGAGAGAGTTAGGTCTCATTTTGTAATTAGCTTTTTCATTGGCTTTTGGATTTGACATATGGACGATATGGTCAAACAGCCAAGCAATCTGTTTGGTATATGGCTTTTTAGCCTAAATGAAAATAGCTACTGAGCATATTATTGACTTTAGGCCTTTGGGCTGTTTTACCAAAAAGTTGGTTAGTTTGTTGATAAACAGCTAGCATCATTTGGGCGAGGTTTGAGATTGGTAAGTATGATTTATTCTTGACGAAAGTGCAAGAAGATGGTAGTGTCATAATTGGGAATTTGGAAGACTTGATTTCCCTCATGGTTTTGTTGCCAATTCAACCGCTCAAATAGTGAATTTTCTTTCCATGCGATACAACCTCCTTGTTCCCGTCATTCTTAGCATGCTTAATGGAATATTCGATGTAATTTAAGCAAAGTTTAATTTGGTGAAGAAGGGCGAAAAATTAACAAAACATCATTAGCCTTTCCAAGACAATCCCCTTAGAAGGATCACTTGTGTCGTTAAATTCTTTAGTTTATTTGATGTCCAAAAATATTGAGAAAAAAGGTTGTTGAATTGGTTGTTATTACCTCCATTTCCAAATAGTTGGCAACGGTTGGAAGTTGGAAACGAGGGGATTATTTATTTATGAACGCATTTCTCATCAAGAGTTTGTATTTGTTGCCAAAACAAATTGTGTGATTTTGATATAACTTTAGAATTGTTACATTGTAGCCTCCCCTTTGGATTTTAGGATGTTTAAGGAACAGAAGTGGTAATTTTTCCTTTGCATGCATGTATTTGCTGAATTTCATCAACCATGTATGATTCCAGGGAATGCCTGACTGGCCGCAAATAGTAGAAGAGCTTCCTCCTTTGGAGAATTTGTTAAGCAAACTCGAAAAATGAGGTTCTTGCCCACATCTTCTACTTGTAAGCAATGCAGCATTTTCCTGTCAACGGCATCTCATTTTGATCTCCGATGTGTTCCTTGGATGATATAACCGGTTTAAAGCCAAGGTTAACCATTGAAGACGTGTGCGATTCAGAAGGTTTTGAGATTTCAAGTCTTTGCTGCTCATCATCTTGCTTTAGGAGACAAGATCTTACTTTAGGTTTTTGTTTTACATTTCTGTTGTGTATTTATGTTTTGCATTTCTCTGAGCAGTTTTAGCTTTCTATTGTATACCTAGTTCAACAACGTTCTTCCGAATGTTGTGGAAATTGATTCATTGGTGTATATAAGTATTTGATTATGATTTTGGAAGGGAAAATGTGTTTGAGCAAAGTACACATGCCGCTATGACTACAGAGGTTACGAAAGCCAGCCCATTTGTAAAGTAAATACATGTAAAATTGGCGCAAAGAAATGTCCAAATGGGTAAACTTTTGAGCAATTTTTAACAAAAATTGGCTAATCTTCCATGGACATCAAAAAACAATCTTAAT

mRNA sequence

TTTCAATAAAATAACAATTGATAACCACACTACTACTTATCGCATTAAACTGTGTATCCAGGAGAGTGTAACAACTATTCTGGGACGGAGTGAGTATCTAAAAATAAACACCAAAAAGCTAGTGAGCCACGGACCACGGTCAATTAACACTTAGCGACCCCACCATTTCTGGTCAGGATAACACATTACACAACCCCTATTTCCTCTCTGCGTTTTTTTTGGTGGTAAATTCAATCAGATGGCAGTGGCTTCACTTGTCCTCCATCACCGAATCCTCTGTTTCTCAAATCCAAAACCCAATCATCATTCAACAATCAGTAAAAGAAGACAATGGTTCTTCAACTCCATTCCCAAGTATTCAACTGCCCACATAAGGGTTCGATTCTCTCTCATCACTTGTTGTTCTTCGTCTTCACCACCACCGCCGGAGACGGCTGCGCAGACGGCGGAGTCATGCGTCAACACGGGTCTCTCTCTCTTTTCTAAAGGACGGGTTAGAGAAGCTCTGGTACAATTTGATACAGCACTTAGCTTAAATCCTAATACTATGGAAGCACAGGCAGCACTGTACAATAAAGCATGTTGTCATGCCTACAGGGGGGAGGGAAAGCAAGCTGCTGAGTGTTTGCGCACTGCTCTTAAAGATTATAACATCAAATTTGGGACCATCCTCAATGATCCAGATTTAGCCTCCTTCAGAGCTTTACCAGAGTTCAAGGAATTACAAGAAGAGGCGAGACTTGGTGGTGAGGATATAGGTGATAGTTTCAGGAGAGACCTCAAGCTCATTAGTGAAGTCCAAGCTCCATTTCGTGGAGTTCGGAGATTTTTTTATGTGGCATTTGCAGTAGCTGCAGGAATTTCCACTTTTTTCACAATTCCCTTGCTGTTCCGTGCAATTCAAGGAGGTGAAGGTGCTCCTGATCTATTAGATACTGCTGGAAATGCCGCTGTAAATATTGGAGGCTTTGCTATTCTGGTGGCACTGTTCATCTGGGATAATAAAAAAGAAGAGGAGCAGATTGCACAGATATCTCGAGATGAAACTCTGTCCAGGTTACCTGTACGTCTTTCTACTAATCGGATTGTTGAATTGGTGCAGCTACGGGATGCTGTTAGACCGGTTATTCTGGCTGGCAAACGGGAAAGTGTTTCTTTGGCAATGCAAAAAGCTGAAAGATTTAGGACTGAGCTCCTTAGAAGAGGTGTTCTTCTAGTTCCTGTCATTTGGGGTGCAGTTGAGGCAGCTTCAGTTGAAAAGAAGGGCTTTGGGAGGTCTGTGAAGGCCGCTGCTTCTCTTCCCTCTATTGGAGATGACTTTGAGAATCGAGCTCAATCTATAACTACGAAATCAAGGTTGCAAGCTGAGATACGTTTCAAGGCTGAGGCTGTATCCCCTGCGGAATGGGAAAGATGGATAACGGACCAGCAAAAATCAAAAGGAGTTACTCCTGGCGAGGATGTATACATAATCCTTCGTCTCGATGGTCGAGTCCGTACGTCAGGCAAGGGAATGCCTGACTGGCCGCAAATAGTAGAAGAGCTTCCTCCTTTGGAGAATTTGTTAAGCAAACTCGAAAAATGAGGTTCTTGCCCACATCTTCTACTTGTAAGCAATGCAGCATTTTCCTGTCAACGGCATCTCATTTTGATCTCCGATGTGTTCCTTGGATGATATAACCGGTTTAAAGCCAAGGTTAACCATTGAAGACGTGTGCGATTCAGAAGGTTTTGAGATTTCAAGTCTTTGCTGCTCATCATCTTGCTTTAGGAGACAAGATCTTACTTTAGGTTTTTGTTTTACATTTCTGTTGTGTATTTATGTTTTGCATTTCTCTGAGCAGTTTTAGCTTTCTATTGTATACCTAGTTCAACAACGTTCTTCCGAATGTTGTGGAAATTGATTCATTGGTGTATATAAGTATTTGATTATGATTTTGGAAGGGAAAATGTGTTTGAGCAAAGTACACATGCCGCTATGACTACAGAGGTTACGAAAGCCAGCCCATTTGTAAAGTAAATACATGTAAAATTGGCGCAAAGAAATGTCCAAATGGGTAAACTTTTGAGCAATTTTTAACAAAAATTGGCTAATCTTCCATGGACATCAAAAAACAATCTTAAT

Coding sequence (CDS)

ATGGCAGTGGCTTCACTTGTCCTCCATCACCGAATCCTCTGTTTCTCAAATCCAAAACCCAATCATCATTCAACAATCAGTAAAAGAAGACAATGGTTCTTCAACTCCATTCCCAAGTATTCAACTGCCCACATAAGGGTTCGATTCTCTCTCATCACTTGTTGTTCTTCGTCTTCACCACCACCGCCGGAGACGGCTGCGCAGACGGCGGAGTCATGCGTCAACACGGGTCTCTCTCTCTTTTCTAAAGGACGGGTTAGAGAAGCTCTGGTACAATTTGATACAGCACTTAGCTTAAATCCTAATACTATGGAAGCACAGGCAGCACTGTACAATAAAGCATGTTGTCATGCCTACAGGGGGGAGGGAAAGCAAGCTGCTGAGTGTTTGCGCACTGCTCTTAAAGATTATAACATCAAATTTGGGACCATCCTCAATGATCCAGATTTAGCCTCCTTCAGAGCTTTACCAGAGTTCAAGGAATTACAAGAAGAGGCGAGACTTGGTGGTGAGGATATAGGTGATAGTTTCAGGAGAGACCTCAAGCTCATTAGTGAAGTCCAAGCTCCATTTCGTGGAGTTCGGAGATTTTTTTATGTGGCATTTGCAGTAGCTGCAGGAATTTCCACTTTTTTCACAATTCCCTTGCTGTTCCGTGCAATTCAAGGAGGTGAAGGTGCTCCTGATCTATTAGATACTGCTGGAAATGCCGCTGTAAATATTGGAGGCTTTGCTATTCTGGTGGCACTGTTCATCTGGGATAATAAAAAAGAAGAGGAGCAGATTGCACAGATATCTCGAGATGAAACTCTGTCCAGGTTACCTGTACGTCTTTCTACTAATCGGATTGTTGAATTGGTGCAGCTACGGGATGCTGTTAGACCGGTTATTCTGGCTGGCAAACGGGAAAGTGTTTCTTTGGCAATGCAAAAAGCTGAAAGATTTAGGACTGAGCTCCTTAGAAGAGGTGTTCTTCTAGTTCCTGTCATTTGGGGTGCAGTTGAGGCAGCTTCAGTTGAAAAGAAGGGCTTTGGGAGGTCTGTGAAGGCCGCTGCTTCTCTTCCCTCTATTGGAGATGACTTTGAGAATCGAGCTCAATCTATAACTACGAAATCAAGGTTGCAAGCTGAGATACGTTTCAAGGCTGAGGCTGTATCCCCTGCGGAATGGGAAAGATGGATAACGGACCAGCAAAAATCAAAAGGAGTTACTCCTGGCGAGGATGTATACATAATCCTTCGTCTCGATGGTCGAGTCCGTACGTCAGGCAAGGGAATGCCTGACTGGCCGCAAATAGTAGAAGAGCTTCCTCCTTTGGAGAATTTGTTAAGCAAACTCGAAAAATGA

Protein sequence

MAVASLVLHHRILCFSNPKPNHHSTISKRRQWFFNSIPKYSTAHIRVRFSLITCCSSSSPPPPETAAQTAESCVNTGLSLFSKGRVREALVQFDTALSLNPNTMEAQAALYNKACCHAYRGEGKQAAECLRTALKDYNIKFGTILNDPDLASFRALPEFKELQEEARLGGEDIGDSFRRDLKLISEVQAPFRGVRRFFYVAFAVAAGISTFFTIPLLFRAIQGGEGAPDLLDTAGNAAVNIGGFAILVALFIWDNKKEEEQIAQISRDETLSRLPVRLSTNRIVELVQLRDAVRPVILAGKRESVSLAMQKAERFRTELLRRGVLLVPVIWGAVEAASVEKKGFGRSVKAAASLPSIGDDFENRAQSITTKSRLQAEIRFKAEAVSPAEWERWITDQQKSKGVTPGEDVYIILRLDGRVRTSGKGMPDWPQIVEELPPLENLLSKLEK

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo07980.1	Spo07980.1	mRNA

Homology

[Close]

BLAST of Spo07980.1 vs. NCBI nr
Match: gi|902210745|gb|KNA16520.1| (hypothetical protein SOVF_088390 [Spinacia oleracea])

HSP 1 Score: 878.6 bits (2269), Expect = 4.500e-252
Identity = 448/448 (100.00%), Postives = 448/448 (100.00%), Query Frame = 1


		  
Query: 1   MAVASLVLHHRILCFSNPKPNHHSTISKRRQWFFNSIPKYSTAHIRVRFSLITCCSSSSP 60
           MAVASLVLHHRILCFSNPKPNHHSTISKRRQWFFNSIPKYSTAHIRVRFSLITCCSSSSP
Sbjct: 1   MAVASLVLHHRILCFSNPKPNHHSTISKRRQWFFNSIPKYSTAHIRVRFSLITCCSSSSP 60

Query: 61  PPPETAAQTAESCVNTGLSLFSKGRVREALVQFDTALSLNPNTMEAQAALYNKACCHAYR 120
           PPPETAAQTAESCVNTGLSLFSKGRVREALVQFDTALSLNPNTMEAQAALYNKACCHAYR
Sbjct: 61  PPPETAAQTAESCVNTGLSLFSKGRVREALVQFDTALSLNPNTMEAQAALYNKACCHAYR 120

Query: 121 GEGKQAAECLRTALKDYNIKFGTILNDPDLASFRALPEFKELQEEARLGGEDIGDSFRRD 180
           GEGKQAAECLRTALKDYNIKFGTILNDPDLASFRALPEFKELQEEARLGGEDIGDSFRRD
Sbjct: 121 GEGKQAAECLRTALKDYNIKFGTILNDPDLASFRALPEFKELQEEARLGGEDIGDSFRRD 180

Query: 181 LKLISEVQAPFRGVRRFFYVAFAVAAGISTFFTIPLLFRAIQGGEGAPDLLDTAGNAAVN 240
           LKLISEVQAPFRGVRRFFYVAFAVAAGISTFFTIPLLFRAIQGGEGAPDLLDTAGNAAVN
Sbjct: 181 LKLISEVQAPFRGVRRFFYVAFAVAAGISTFFTIPLLFRAIQGGEGAPDLLDTAGNAAVN 240

Query: 241 IGGFAILVALFIWDNKKEEEQIAQISRDETLSRLPVRLSTNRIVELVQLRDAVRPVILAG 300
           IGGFAILVALFIWDNKKEEEQIAQISRDETLSRLPVRLSTNRIVELVQLRDAVRPVILAG
Sbjct: 241 IGGFAILVALFIWDNKKEEEQIAQISRDETLSRLPVRLSTNRIVELVQLRDAVRPVILAG 300

Query: 301 KRESVSLAMQKAERFRTELLRRGVLLVPVIWGAVEAASVEKKGFGRSVKAAASLPSIGDD 360
           KRESVSLAMQKAERFRTELLRRGVLLVPVIWGAVEAASVEKKGFGRSVKAAASLPSIGDD
Sbjct: 301 KRESVSLAMQKAERFRTELLRRGVLLVPVIWGAVEAASVEKKGFGRSVKAAASLPSIGDD 360

Query: 361 FENRAQSITTKSRLQAEIRFKAEAVSPAEWERWITDQQKSKGVTPGEDVYIILRLDGRVR 420
           FENRAQSITTKSRLQAEIRFKAEAVSPAEWERWITDQQKSKGVTPGEDVYIILRLDGRVR
Sbjct: 361 FENRAQSITTKSRLQAEIRFKAEAVSPAEWERWITDQQKSKGVTPGEDVYIILRLDGRVR 420

Query: 421 TSGKGMPDWPQIVEELPPLENLLSKLEK 449
           TSGKGMPDWPQIVEELPPLENLLSKLEK
Sbjct: 421 TSGKGMPDWPQIVEELPPLENLLSKLEK 448

[Close]

BLAST of Spo07980.1 vs. NCBI nr
Match: gi|731346530|ref|XP_010684503.1| (PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic isoform X1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 733.8 bits (1893), Expect = 1.800e-208
Identity = 377/449 (83.96%), Postives = 404/449 (89.98%), Query Frame = 1


		  
Query: 1   MAVASLVLHHRILCFSNPKPNHHSTISKRRQWFFNSIPKYST-AHIRVRFSLITCCSSSS 60
           MAVASL+L  +I  F NPK  H + I  R +WF N     S+ AH RVRFS ITCCSSSS
Sbjct: 1   MAVASLLLV-QIFSFPNPKFQHSTFIKTRTKWFPNKFSNSSSIAHERVRFSFITCCSSSS 60

Query: 61  PPPPETAAQTAESCVNTGLSLFSKGRVREALVQFDTALSLNPNTMEAQAALYNKACCHAY 120
           P PPE   QTAESCVN GLSLFS+GRVREALVQFDTALS NPNTMEAQAALYNKACCHAY
Sbjct: 61  PSPPEKEPQTAESCVNLGLSLFSRGRVREALVQFDTALSSNPNTMEAQAALYNKACCHAY 120

Query: 121 RGEGKQAAECLRTALKDYNIKFGTILNDPDLASFRALPEFKELQEEARLGGEDIGDSFRR 180
           RGEGKQA+ECLRTALK+YN+KFGTILNDPDLASFR LPEFKELQEEARLGGED+G SFRR
Sbjct: 121 RGEGKQASECLRTALKEYNLKFGTILNDPDLASFRVLPEFKELQEEARLGGEDVGYSFRR 180

Query: 181 DLKLISEVQAPFRGVRRFFYVAFAVAAGISTFFTIPLLFRAIQGGEGAPDLLDTAGNAAV 240
           DLKLISEVQAPFRG+RRFFYVAFA AAGISTFFTIPLLFRAIQGGEGAPDLL TAGNAAV
Sbjct: 181 DLKLISEVQAPFRGIRRFFYVAFATAAGISTFFTIPLLFRAIQGGEGAPDLLGTAGNAAV 240

Query: 241 NIGGFAILVALFIWDNKKEEEQIAQISRDETLSRLPVRLSTNRIVELVQLRDAVRPVILA 300
           NIGG  +LVALFIWDN+KEEEQ+AQISRDETLSRLP+RLSTNRI+ELVQLRD  RPVILA
Sbjct: 241 NIGGIVVLVALFIWDNRKEEEQLAQISRDETLSRLPLRLSTNRILELVQLRDTARPVILA 300

Query: 301 GKRESVSLAMQKAERFRTELLRRGVLLVPVIWGAVEAASVEKKGFGRSVKAAASLPSIGD 360
           GKRESVSLAM+KAERFRTELL+RG+LLVPVIWG  EA  VEKKGFG  VKAAASLPSIGD
Sbjct: 301 GKRESVSLAMKKAERFRTELLKRGLLLVPVIWGEGEATPVEKKGFGFPVKAAASLPSIGD 360

Query: 361 DFENRAQSITTKSRLQAEIRFKAEAVSPAEWERWITDQQKSKGVTPGEDVYIILRLDGRV 420
           DFE RAQSITTK++LQAEIRFKAEAVSPAEWERWI DQQKS+GVTPGEDVYIILRLDGR+
Sbjct: 361 DFEKRAQSITTKTKLQAEIRFKAEAVSPAEWERWIKDQQKSEGVTPGEDVYIILRLDGRI 420

Query: 421 RTSGKGMPDWPQIVEELPPLENLLSKLEK 449
           R SGKGMPDW +I++ELPPLENLLS+LEK
Sbjct: 421 RRSGKGMPDWQEIIKELPPLENLLSQLEK 448

[Close]

BLAST of Spo07980.1 vs. NCBI nr
Match: gi|1009148622|ref|XP_015892037.1| (PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic isoform X1 [Ziziphus jujuba])

HSP 1 Score: 661.8 bits (1706), Expect = 8.700e-187
Identity = 342/452 (75.66%), Postives = 389/452 (86.06%), Query Frame = 1


		  
Query: 1   MAVAS-LVLHHRILCFSNPKPNHHST---ISKRRQWFFNSIPKYSTAHIRVRFSLITCCS 60
           MAVA+ L L  ++LCFSN K     T   +S R+    + +  +++   ++  SLI+C S
Sbjct: 1   MAVAAALSLQQQLLCFSNLKTRTRRTTPWLSTRK----SILTHFNSQTNKLHLSLISCSS 60

Query: 61  SSSPPPPETAAQTAESCVNTGLSLFSKGRVREALVQFDTALSLNPNTMEAQAALYNKACC 120
           S+S  P E   +TAESCVN GL LFSKGRV++AL+QF+TAL+L+PN MEAQAALYNKACC
Sbjct: 61  STSQSP-EANTETAESCVNLGLQLFSKGRVKDALIQFETALNLDPNPMEAQAALYNKACC 120

Query: 121 HAYRGEGKQAAECLRTALKDYNIKFGTILNDPDLASFRALPEFKELQEEARLGGEDIGDS 180
           HAYRGEGK+AA+CLRTAL++YN+KFGTILNDPDLASFRALPEFKELQEEARLGGEDIG S
Sbjct: 121 HAYRGEGKKAADCLRTALREYNLKFGTILNDPDLASFRALPEFKELQEEARLGGEDIGYS 180

Query: 181 FRRDLKLISEVQAPFRGVRRFFYVAFAVAAGISTFFTIPLLFRAIQGGEGAPDLLDTAGN 240
           FRRDLKLISEVQAPFRGVRRFFYVAF+ AAGIS  FT+P L RAIQGG+GAPDL +TAGN
Sbjct: 181 FRRDLKLISEVQAPFRGVRRFFYVAFSAAAGISLLFTVPRLVRAIQGGDGAPDLWETAGN 240

Query: 241 AAVNIGGFAILVALFIWDNKKEEEQIAQISRDETLSRLPVRLSTNRIVELVQLRDAVRPV 300
            A+N+GG  +LVALF WDNKKEEEQ+AQI+RDETLSRLP+RLSTNRIVELVQLRD VRPV
Sbjct: 241 VAINVGGIIVLVALFFWDNKKEEEQLAQITRDETLSRLPLRLSTNRIVELVQLRDTVRPV 300

Query: 301 ILAGKRESVSLAMQKAERFRTELLRRGVLLVPVIWGAVEAASVEKKGFGRSVKAAASLPS 360
           ILAGK+E+VSLAM+KAERFRTELLRRGVLLVPV WG  EA  +EKKGFG   KAAA+LPS
Sbjct: 301 ILAGKKETVSLAMRKAERFRTELLRRGVLLVPVTWGEGEAPQIEKKGFGSPTKAAAALPS 360

Query: 361 IGDDFENRAQSITTKSRLQAEIRFKAEAVSPAEWERWITDQQKSKGVTPGEDVYIILRLD 420
           IG+DFE RAQSIT KS+LQAEIRFKAE VSPAEWERWI DQQKS+GVTPGEDVYIILRLD
Sbjct: 361 IGEDFEKRAQSITAKSKLQAEIRFKAEVVSPAEWERWIRDQQKSEGVTPGEDVYIILRLD 420

Query: 421 GRVRTSGKGMPDWPQIVEELPPLENLLSKLEK 449
           GRVR SGKGMPDW QIV+ELPP+E LLSKLE+
Sbjct: 421 GRVRRSGKGMPDWDQIVKELPPIEALLSKLER 447

[Close]

BLAST of Spo07980.1 vs. NCBI nr
Match: gi|702435789|ref|XP_010069953.1| (PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic [Eucalyptus grandis])

HSP 1 Score: 657.5 bits (1695), Expect = 1.600e-185
Identity = 343/451 (76.05%), Postives = 384/451 (85.14%), Query Frame = 1


		  
Query: 1   MAVASLVLHHRILCFSNPKPNHHSTISKRRQWFFNS---IPKYSTAHIRVRFSLITCCSS 60
           MA A+L L+H +L     + +  S+ ++ R W        P+ +T   RVRFS I C SS
Sbjct: 1   MAGAALPLNHHLLL----RLSSSSSSARARSWLSRGGEGAPRPTTR--RVRFSGIRCSSS 60

Query: 61  SSPPPPETAAQTAESCVNTGLSLFSKGRVREALVQFDTALSLNPNTMEAQAALYNKACCH 120
           +S    E A  TAESCVNTGL LFSKGRV+EAL  FDTAL+LNPN MEAQAALYNKACCH
Sbjct: 61  TSQAQEEEAPATAESCVNTGLELFSKGRVKEALSLFDTALTLNPNPMEAQAALYNKACCH 120

Query: 121 AYRGEGKQAAECLRTALKDYNIKFGTILNDPDLASFRALPEFKELQEEARLGGEDIGDSF 180
           AYRGEGK+AA+CLRTALK+YN+KFGTILNDPDLASFRALPEFKELQEEARLGGEDIG SF
Sbjct: 121 AYRGEGKKAADCLRTALKEYNLKFGTILNDPDLASFRALPEFKELQEEARLGGEDIGYSF 180

Query: 181 RRDLKLISEVQAPFRGVRRFFYVAFAVAAGISTFFTIPLLFRAIQGGEGAPDLLDTAGNA 240
           RRDLKLI EVQAPFRGVRRFFYVAF+ AAGIS FFT+P L RAI GG+GAPDL DT GNA
Sbjct: 181 RRDLKLIGEVQAPFRGVRRFFYVAFSAAAGISLFFTVPRLIRAINGGDGAPDLWDTVGNA 240

Query: 241 AVNIGGFAILVALFIWDNKKEEEQIAQISRDETLSRLPVRLSTNRIVELVQLRDAVRPVI 300
           A+NIGG  +LVALF WDNKKEEEQ+AQISR+ETLSRLP+RLSTNR+VELVQLRD VRPVI
Sbjct: 241 AINIGGIIVLVALFSWDNKKEEEQLAQISRNETLSRLPLRLSTNRVVELVQLRDTVRPVI 300

Query: 301 LAGKRESVSLAMQKAERFRTELLRRGVLLVPVIWGAVEAASVEKKGFGRSVKAAASLPSI 360
           LAGK+E+++LAMQKAERFRTELLRRGVLLVPVIW   +AA  EKKGFG S KAAA+LPSI
Sbjct: 301 LAGKKETIALAMQKAERFRTELLRRGVLLVPVIWSEGKAAPSEKKGFGASSKAAAALPSI 360

Query: 361 GDDFENRAQSITTKSRLQAEIRFKAEAVSPAEWERWITDQQKSKGVTPGEDVYIILRLDG 420
           G+DFE RAQSITT+S+L+AEIRFKAE VSPAEWERWI DQQKS+GVT GEDVYIILRLDG
Sbjct: 361 GEDFEKRAQSITTQSKLKAEIRFKAEVVSPAEWERWIKDQQKSEGVTSGEDVYIILRLDG 420

Query: 421 RVRTSGKGMPDWPQIVEELPPLENLLSKLEK 449
           RVR SGKGMPDW QIV+ELPP++ LLSKLE+
Sbjct: 421 RVRRSGKGMPDWQQIVKELPPMDALLSKLER 445

[Close]

BLAST of Spo07980.1 vs. NCBI nr
Match: gi|823188143|ref|XP_012490417.1| (PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic [Gossypium raimondii])

HSP 1 Score: 651.0 bits (1678), Expect = 1.500e-183
Identity = 335/451 (74.28%), Postives = 381/451 (84.48%), Query Frame = 1


		  
Query: 1   MAVASLVLHHRILCFSNPKPNHHSTISKRRQWFFNSIPKYST---AHIRVRFSLITCCSS 60
           MAVA+L L+ ++LCFS PK       +K R WF    P+ +T   +  +    +++C SS
Sbjct: 1   MAVAALALNQQLLCFSYPKIR-----AKSRPWF----PQKTTLLNSQKKPHIFIVSCSSS 60

Query: 61  SSPPPPETAAQTAESCVNTGLSLFSKGRVREALVQFDTALSLNPNTMEAQAALYNKACCH 120
            +   PE   QTAESCVN GLSLFSKGRV++ALVQF+TALSL+PN +EAQAALYNKACCH
Sbjct: 61  PTSQSPEANVQTAESCVNLGLSLFSKGRVKDALVQFETALSLDPNPVEAQAALYNKACCH 120

Query: 121 AYRGEGKQAAECLRTALKDYNIKFGTILNDPDLASFRALPEFKELQEEARLGGEDIGDSF 180
           AY+GE K+AAECLRTAL+DYN+KFGTILNDPDLAS RA PEFKELQEEARLGGEDIG SF
Sbjct: 121 AYQGEAKKAAECLRTALRDYNLKFGTILNDPDLASLRASPEFKELQEEARLGGEDIGYSF 180

Query: 181 RRDLKLISEVQAPFRGVRRFFYVAFAVAAGISTFFTIPLLFRAIQGGEGAPDLLDTAGNA 240
           RRDLKLISEVQAPFRGVRRFFYVAF+ AAGIS  FT+P LFRAI+GG+GAPD+ +T GNA
Sbjct: 181 RRDLKLISEVQAPFRGVRRFFYVAFSAAAGISLLFTVPRLFRAIKGGDGAPDIWETVGNA 240

Query: 241 AVNIGGFAILVALFIWDNKKEEEQIAQISRDETLSRLPVRLSTNRIVELVQLRDAVRPVI 300
            +NIGG  +LVAL+ WDNKKEEEQ+AQISR+ETLSRLP+RLSTNRIVELVQLRD VRPVI
Sbjct: 241 GINIGGIIVLVALYFWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVI 300

Query: 301 LAGKRESVSLAMQKAERFRTELLRRGVLLVPVIWGAVEAASVEKKGFGRSVKAAASLPSI 360
           LAGK+ESVS A+QKAERFRTELLRRGVLLVPVIWG      VEKKGFG S KAA +LPSI
Sbjct: 301 LAGKKESVSSALQKAERFRTELLRRGVLLVPVIWGEGRTPQVEKKGFGVSKKAATALPSI 360

Query: 361 GDDFENRAQSITTKSRLQAEIRFKAEAVSPAEWERWITDQQKSKGVTPGEDVYIILRLDG 420
           G+DFE RAQSIT KS+L+AEIRFKAE +S  EWERWI DQQ+S+GVTPGEDVYIILRLDG
Sbjct: 361 GEDFEKRAQSITAKSKLKAEIRFKAEVISLEEWERWIRDQQESEGVTPGEDVYIILRLDG 420

Query: 421 RVRTSGKGMPDWPQIVEELPPLENLLSKLEK 449
           RVR SGKGMPDW QIV+ELPP+E LLSKLE+
Sbjct: 421 RVRRSGKGMPDWSQIVQELPPMEALLSKLER 442

[Close]

BLAST of Spo07980.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RAK6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_088390 PE=4 SV=1)

HSP 1 Score: 878.6 bits (2269), Expect = 3.200e-252
Identity = 448/448 (100.00%), Postives = 448/448 (100.00%), Query Frame = 1


		  
Query: 1   MAVASLVLHHRILCFSNPKPNHHSTISKRRQWFFNSIPKYSTAHIRVRFSLITCCSSSSP 60
           MAVASLVLHHRILCFSNPKPNHHSTISKRRQWFFNSIPKYSTAHIRVRFSLITCCSSSSP
Sbjct: 1   MAVASLVLHHRILCFSNPKPNHHSTISKRRQWFFNSIPKYSTAHIRVRFSLITCCSSSSP 60

Query: 61  PPPETAAQTAESCVNTGLSLFSKGRVREALVQFDTALSLNPNTMEAQAALYNKACCHAYR 120
           PPPETAAQTAESCVNTGLSLFSKGRVREALVQFDTALSLNPNTMEAQAALYNKACCHAYR
Sbjct: 61  PPPETAAQTAESCVNTGLSLFSKGRVREALVQFDTALSLNPNTMEAQAALYNKACCHAYR 120

Query: 121 GEGKQAAECLRTALKDYNIKFGTILNDPDLASFRALPEFKELQEEARLGGEDIGDSFRRD 180
           GEGKQAAECLRTALKDYNIKFGTILNDPDLASFRALPEFKELQEEARLGGEDIGDSFRRD
Sbjct: 121 GEGKQAAECLRTALKDYNIKFGTILNDPDLASFRALPEFKELQEEARLGGEDIGDSFRRD 180

Query: 181 LKLISEVQAPFRGVRRFFYVAFAVAAGISTFFTIPLLFRAIQGGEGAPDLLDTAGNAAVN 240
           LKLISEVQAPFRGVRRFFYVAFAVAAGISTFFTIPLLFRAIQGGEGAPDLLDTAGNAAVN
Sbjct: 181 LKLISEVQAPFRGVRRFFYVAFAVAAGISTFFTIPLLFRAIQGGEGAPDLLDTAGNAAVN 240

Query: 241 IGGFAILVALFIWDNKKEEEQIAQISRDETLSRLPVRLSTNRIVELVQLRDAVRPVILAG 300
           IGGFAILVALFIWDNKKEEEQIAQISRDETLSRLPVRLSTNRIVELVQLRDAVRPVILAG
Sbjct: 241 IGGFAILVALFIWDNKKEEEQIAQISRDETLSRLPVRLSTNRIVELVQLRDAVRPVILAG 300

Query: 301 KRESVSLAMQKAERFRTELLRRGVLLVPVIWGAVEAASVEKKGFGRSVKAAASLPSIGDD 360
           KRESVSLAMQKAERFRTELLRRGVLLVPVIWGAVEAASVEKKGFGRSVKAAASLPSIGDD
Sbjct: 301 KRESVSLAMQKAERFRTELLRRGVLLVPVIWGAVEAASVEKKGFGRSVKAAASLPSIGDD 360

Query: 361 FENRAQSITTKSRLQAEIRFKAEAVSPAEWERWITDQQKSKGVTPGEDVYIILRLDGRVR 420
           FENRAQSITTKSRLQAEIRFKAEAVSPAEWERWITDQQKSKGVTPGEDVYIILRLDGRVR
Sbjct: 361 FENRAQSITTKSRLQAEIRFKAEAVSPAEWERWITDQQKSKGVTPGEDVYIILRLDGRVR 420

Query: 421 TSGKGMPDWPQIVEELPPLENLLSKLEK 449
           TSGKGMPDWPQIVEELPPLENLLSKLEK
Sbjct: 421 TSGKGMPDWPQIVEELPPLENLLSKLEK 448

[Close]

BLAST of Spo07980.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C1A7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g164570 PE=4 SV=1)

HSP 1 Score: 733.8 bits (1893), Expect = 1.300e-208
Identity = 377/449 (83.96%), Postives = 404/449 (89.98%), Query Frame = 1


		  
Query: 1   MAVASLVLHHRILCFSNPKPNHHSTISKRRQWFFNSIPKYST-AHIRVRFSLITCCSSSS 60
           MAVASL+L  +I  F NPK  H + I  R +WF N     S+ AH RVRFS ITCCSSSS
Sbjct: 1   MAVASLLLV-QIFSFPNPKFQHSTFIKTRTKWFPNKFSNSSSIAHERVRFSFITCCSSSS 60

Query: 61  PPPPETAAQTAESCVNTGLSLFSKGRVREALVQFDTALSLNPNTMEAQAALYNKACCHAY 120
           P PPE   QTAESCVN GLSLFS+GRVREALVQFDTALS NPNTMEAQAALYNKACCHAY
Sbjct: 61  PSPPEKEPQTAESCVNLGLSLFSRGRVREALVQFDTALSSNPNTMEAQAALYNKACCHAY 120

Query: 121 RGEGKQAAECLRTALKDYNIKFGTILNDPDLASFRALPEFKELQEEARLGGEDIGDSFRR 180
           RGEGKQA+ECLRTALK+YN+KFGTILNDPDLASFR LPEFKELQEEARLGGED+G SFRR
Sbjct: 121 RGEGKQASECLRTALKEYNLKFGTILNDPDLASFRVLPEFKELQEEARLGGEDVGYSFRR 180

Query: 181 DLKLISEVQAPFRGVRRFFYVAFAVAAGISTFFTIPLLFRAIQGGEGAPDLLDTAGNAAV 240
           DLKLISEVQAPFRG+RRFFYVAFA AAGISTFFTIPLLFRAIQGGEGAPDLL TAGNAAV
Sbjct: 181 DLKLISEVQAPFRGIRRFFYVAFATAAGISTFFTIPLLFRAIQGGEGAPDLLGTAGNAAV 240

Query: 241 NIGGFAILVALFIWDNKKEEEQIAQISRDETLSRLPVRLSTNRIVELVQLRDAVRPVILA 300
           NIGG  +LVALFIWDN+KEEEQ+AQISRDETLSRLP+RLSTNRI+ELVQLRD  RPVILA
Sbjct: 241 NIGGIVVLVALFIWDNRKEEEQLAQISRDETLSRLPLRLSTNRILELVQLRDTARPVILA 300

Query: 301 GKRESVSLAMQKAERFRTELLRRGVLLVPVIWGAVEAASVEKKGFGRSVKAAASLPSIGD 360
           GKRESVSLAM+KAERFRTELL+RG+LLVPVIWG  EA  VEKKGFG  VKAAASLPSIGD
Sbjct: 301 GKRESVSLAMKKAERFRTELLKRGLLLVPVIWGEGEATPVEKKGFGFPVKAAASLPSIGD 360

Query: 361 DFENRAQSITTKSRLQAEIRFKAEAVSPAEWERWITDQQKSKGVTPGEDVYIILRLDGRV 420
           DFE RAQSITTK++LQAEIRFKAEAVSPAEWERWI DQQKS+GVTPGEDVYIILRLDGR+
Sbjct: 361 DFEKRAQSITTKTKLQAEIRFKAEAVSPAEWERWIKDQQKSEGVTPGEDVYIILRLDGRI 420

Query: 421 RTSGKGMPDWPQIVEELPPLENLLSKLEK 449
           R SGKGMPDW +I++ELPPLENLLS+LEK
Sbjct: 421 RRSGKGMPDWQEIIKELPPLENLLSQLEK 448

[Close]

BLAST of Spo07980.1 vs. UniProtKB/TrEMBL
Match: A0A059AYJ5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H01162 PE=4 SV=1)

HSP 1 Score: 657.5 bits (1695), Expect = 1.100e-185
Identity = 343/451 (76.05%), Postives = 384/451 (85.14%), Query Frame = 1


		  
Query: 1   MAVASLVLHHRILCFSNPKPNHHSTISKRRQWFFNS---IPKYSTAHIRVRFSLITCCSS 60
           MA A+L L+H +L     + +  S+ ++ R W        P+ +T   RVRFS I C SS
Sbjct: 1   MAGAALPLNHHLLL----RLSSSSSSARARSWLSRGGEGAPRPTTR--RVRFSGIRCSSS 60

Query: 61  SSPPPPETAAQTAESCVNTGLSLFSKGRVREALVQFDTALSLNPNTMEAQAALYNKACCH 120
           +S    E A  TAESCVNTGL LFSKGRV+EAL  FDTAL+LNPN MEAQAALYNKACCH
Sbjct: 61  TSQAQEEEAPATAESCVNTGLELFSKGRVKEALSLFDTALTLNPNPMEAQAALYNKACCH 120

Query: 121 AYRGEGKQAAECLRTALKDYNIKFGTILNDPDLASFRALPEFKELQEEARLGGEDIGDSF 180
           AYRGEGK+AA+CLRTALK+YN+KFGTILNDPDLASFRALPEFKELQEEARLGGEDIG SF
Sbjct: 121 AYRGEGKKAADCLRTALKEYNLKFGTILNDPDLASFRALPEFKELQEEARLGGEDIGYSF 180

Query: 181 RRDLKLISEVQAPFRGVRRFFYVAFAVAAGISTFFTIPLLFRAIQGGEGAPDLLDTAGNA 240
           RRDLKLI EVQAPFRGVRRFFYVAF+ AAGIS FFT+P L RAI GG+GAPDL DT GNA
Sbjct: 181 RRDLKLIGEVQAPFRGVRRFFYVAFSAAAGISLFFTVPRLIRAINGGDGAPDLWDTVGNA 240

Query: 241 AVNIGGFAILVALFIWDNKKEEEQIAQISRDETLSRLPVRLSTNRIVELVQLRDAVRPVI 300
           A+NIGG  +LVALF WDNKKEEEQ+AQISR+ETLSRLP+RLSTNR+VELVQLRD VRPVI
Sbjct: 241 AINIGGIIVLVALFSWDNKKEEEQLAQISRNETLSRLPLRLSTNRVVELVQLRDTVRPVI 300

Query: 301 LAGKRESVSLAMQKAERFRTELLRRGVLLVPVIWGAVEAASVEKKGFGRSVKAAASLPSI 360
           LAGK+E+++LAMQKAERFRTELLRRGVLLVPVIW   +AA  EKKGFG S KAAA+LPSI
Sbjct: 301 LAGKKETIALAMQKAERFRTELLRRGVLLVPVIWSEGKAAPSEKKGFGASSKAAAALPSI 360

Query: 361 GDDFENRAQSITTKSRLQAEIRFKAEAVSPAEWERWITDQQKSKGVTPGEDVYIILRLDG 420
           G+DFE RAQSITT+S+L+AEIRFKAE VSPAEWERWI DQQKS+GVT GEDVYIILRLDG
Sbjct: 361 GEDFEKRAQSITTQSKLKAEIRFKAEVVSPAEWERWIKDQQKSEGVTSGEDVYIILRLDG 420

Query: 421 RVRTSGKGMPDWPQIVEELPPLENLLSKLEK 449
           RVR SGKGMPDW QIV+ELPP++ LLSKLE+
Sbjct: 421 RVRRSGKGMPDWQQIVKELPPMDALLSKLER 445

[Close]

BLAST of Spo07980.1 vs. UniProtKB/TrEMBL
Match: A0A0D2SCC8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G129100 PE=4 SV=1)

HSP 1 Score: 651.0 bits (1678), Expect = 1.100e-183
Identity = 335/451 (74.28%), Postives = 381/451 (84.48%), Query Frame = 1


		  
Query: 1   MAVASLVLHHRILCFSNPKPNHHSTISKRRQWFFNSIPKYST---AHIRVRFSLITCCSS 60
           MAVA+L L+ ++LCFS PK       +K R WF    P+ +T   +  +    +++C SS
Sbjct: 1   MAVAALALNQQLLCFSYPKIR-----AKSRPWF----PQKTTLLNSQKKPHIFIVSCSSS 60

Query: 61  SSPPPPETAAQTAESCVNTGLSLFSKGRVREALVQFDTALSLNPNTMEAQAALYNKACCH 120
            +   PE   QTAESCVN GLSLFSKGRV++ALVQF+TALSL+PN +EAQAALYNKACCH
Sbjct: 61  PTSQSPEANVQTAESCVNLGLSLFSKGRVKDALVQFETALSLDPNPVEAQAALYNKACCH 120

Query: 121 AYRGEGKQAAECLRTALKDYNIKFGTILNDPDLASFRALPEFKELQEEARLGGEDIGDSF 180
           AY+GE K+AAECLRTAL+DYN+KFGTILNDPDLAS RA PEFKELQEEARLGGEDIG SF
Sbjct: 121 AYQGEAKKAAECLRTALRDYNLKFGTILNDPDLASLRASPEFKELQEEARLGGEDIGYSF 180

Query: 181 RRDLKLISEVQAPFRGVRRFFYVAFAVAAGISTFFTIPLLFRAIQGGEGAPDLLDTAGNA 240
           RRDLKLISEVQAPFRGVRRFFYVAF+ AAGIS  FT+P LFRAI+GG+GAPD+ +T GNA
Sbjct: 181 RRDLKLISEVQAPFRGVRRFFYVAFSAAAGISLLFTVPRLFRAIKGGDGAPDIWETVGNA 240

Query: 241 AVNIGGFAILVALFIWDNKKEEEQIAQISRDETLSRLPVRLSTNRIVELVQLRDAVRPVI 300
            +NIGG  +LVAL+ WDNKKEEEQ+AQISR+ETLSRLP+RLSTNRIVELVQLRD VRPVI
Sbjct: 241 GINIGGIIVLVALYFWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVI 300

Query: 301 LAGKRESVSLAMQKAERFRTELLRRGVLLVPVIWGAVEAASVEKKGFGRSVKAAASLPSI 360
           LAGK+ESVS A+QKAERFRTELLRRGVLLVPVIWG      VEKKGFG S KAA +LPSI
Sbjct: 301 LAGKKESVSSALQKAERFRTELLRRGVLLVPVIWGEGRTPQVEKKGFGVSKKAATALPSI 360

Query: 361 GDDFENRAQSITTKSRLQAEIRFKAEAVSPAEWERWITDQQKSKGVTPGEDVYIILRLDG 420
           G+DFE RAQSIT KS+L+AEIRFKAE +S  EWERWI DQQ+S+GVTPGEDVYIILRLDG
Sbjct: 361 GEDFEKRAQSITAKSKLKAEIRFKAEVISLEEWERWIRDQQESEGVTPGEDVYIILRLDG 420

Query: 421 RVRTSGKGMPDWPQIVEELPPLENLLSKLEK 449
           RVR SGKGMPDW QIV+ELPP+E LLSKLE+
Sbjct: 421 RVRRSGKGMPDWSQIVQELPPMEALLSKLER 442

[Close]

BLAST of Spo07980.1 vs. UniProtKB/TrEMBL
Match: D7U260_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g00100 PE=4 SV=1)

HSP 1 Score: 650.6 bits (1677), Expect = 1.400e-183
Identity = 334/445 (75.06%), Postives = 377/445 (84.72%), Query Frame = 1


		  
Query: 4   ASLVLHHRILCFSNPKPNHHSTISKRRQWFFNSIPKYSTAHIRVRFSLITCCSSSSPPPP 63
           A+L ++H +LCFSNP+     T++    W    +P       R   S   C SSSS   P
Sbjct: 5   AALAVNHHLLCFSNPR-----TVT----W----VPTKLKPQKRAYLSFTCCTSSSSSTSP 64

Query: 64  ETAAQTAESCVNTGLSLFSKGRVREALVQFDTALSLNPNTMEAQAALYNKACCHAYRGEG 123
           E   QTAES VN GLSLFS+GRV++AL QF+TAL+L+PN MEAQAALYNKACCHAYRGEG
Sbjct: 65  EADLQTAESRVNLGLSLFSRGRVKDALAQFETALTLDPNPMEAQAALYNKACCHAYRGEG 124

Query: 124 KQAAECLRTALKDYNIKFGTILNDPDLASFRALPEFKELQEEARLGGEDIGDSFRRDLKL 183
           K+AA+CLRTAL++YN+KF TILNDPDLASFRALPEFKELQEEARLGGEDIG SFRRDLKL
Sbjct: 125 KKAADCLRTALREYNLKFSTILNDPDLASFRALPEFKELQEEARLGGEDIGYSFRRDLKL 184

Query: 184 ISEVQAPFRGVRRFFYVAFAVAAGISTFFTIPLLFRAIQGGEGAPDLLDTAGNAAVNIGG 243
           ISEVQAPFRGVRRFFYVAF+ AAGISTFFTIP LFRAI+GG+GAPD+ +TAGNAA+NIGG
Sbjct: 185 ISEVQAPFRGVRRFFYVAFSAAAGISTFFTIPRLFRAIKGGDGAPDIWETAGNAAINIGG 244

Query: 244 FAILVALFIWDNKKEEEQIAQISRDETLSRLPVRLSTNRIVELVQLRDAVRPVILAGKRE 303
              LV LF WDNKKEEEQ+AQISRDETLSRLP+RLSTNR+VELVQLRD VRPVILAG +E
Sbjct: 245 IIALVLLFFWDNKKEEEQLAQISRDETLSRLPLRLSTNRVVELVQLRDTVRPVILAGTKE 304

Query: 304 SVSLAMQKAERFRTELLRRGVLLVPVIWGAVEAASVEKKGFGRSVKAAASLPSIGDDFEN 363
           +VSLA++KAERFRTELL+RGVLLVPVIWG  +A  +EKKGFG   KAA SLPSIG+DFE 
Sbjct: 305 TVSLAIKKAERFRTELLKRGVLLVPVIWGENKAPQMEKKGFGIPSKAATSLPSIGEDFEK 364

Query: 364 RAQSITTKSRLQAEIRFKAEAVSPAEWERWITDQQKSKGVTPGEDVYIILRLDGRVRTSG 423
           R +SI  KSRL+AE+RFKAE VSPAEWERWI DQQKS+GVTPGEDVYIILRLDGRVR SG
Sbjct: 365 RTESIAAKSRLKAEVRFKAEVVSPAEWERWIRDQQKSEGVTPGEDVYIILRLDGRVRRSG 424

Query: 424 KGMPDWPQIVEELPPLENLLSKLEK 449
           KGMPDW QIV+ELPP+E LLSKLE+
Sbjct: 425 KGMPDWQQIVKELPPMEALLSKLER 436

[Close]

BLAST of Spo07980.1 vs. ExPASy Swiss-Prot
Match: LPA1_ARATH (Protein LOW PSII ACCUMULATION 1, chloroplastic OS=Arabidopsis thaliana GN=LPA1 PE=1 SV=1)

HSP 1 Score: 609.4 bits (1570), Expect = 3.200e-173
Identity = 305/437 (69.79%), Postives = 367/437 (83.98%), Query Frame = 1


		  
Query: 21  NHHSTISKRRQWF-------FNSIPKYSTAHIRVRFSLITCCSSSSPPPPETAAQ--TAE 80
           N +S + +RR W        FNS   + + H+ V ++  +   SSSPP P +     TAE
Sbjct: 19  NLYSRVKQRRPWLPPGDATLFNSRRNWDS-HLFV-YASSSSSPSSSPPSPNSPTDDLTAE 78

Query: 81  SCVNTGLSLFSKGRVREALVQFDTALSLNPNTMEAQAALYNKACCHAYRGEGKQAAECLR 140
            CVNTGL LF +GRV++ALVQF+TALSL PN +E+QAA YNKACCHAYRGEGK+A +CLR
Sbjct: 79  LCVNTGLDLFKRGRVKDALVQFETALSLAPNPIESQAAYYNKACCHAYRGEGKKAVDCLR 138

Query: 141 TALKDYNIKFGTILNDPDLASFRALPEFKELQEEARLGGEDIGDSFRRDLKLISEVQAPF 200
            AL+DYN+KF TILNDPDLASFRALPEFKELQEEARLGGEDIGD+FRRDLKLISEV+APF
Sbjct: 139 IALRDYNLKFATILNDPDLASFRALPEFKELQEEARLGGEDIGDNFRRDLKLISEVRAPF 198

Query: 201 RGVRRFFYVAFAVAAGISTFFTIPLLFRAIQGGEGAPDLLDTAGNAAVNIGGFAILVALF 260
           RGVR+FFY AFA AAGIS FFT+P L +AI+GG+GAP+LL+T GNAA+NIGG  ++V+LF
Sbjct: 199 RGVRKFFYFAFAAAAGISMFFTVPRLVQAIRGGDGAPNLLETTGNAAINIGGIVVMVSLF 258

Query: 261 IWDNKKEEEQIAQISRDETLSRLPVRLSTNRIVELVQLRDAVRPVILAGKRESVSLAMQK 320
           +W+NKKEEEQ+ QI+RDETLSRLP+RLSTNR+VELVQLRD VRPVILAGK+E+V+LAMQK
Sbjct: 259 LWENKKEEEQMVQITRDETLSRLPLRLSTNRVVELVQLRDTVRPVILAGKKETVTLAMQK 318

Query: 321 AERFRTELLRRGVLLVPVIWGAVEAASVEKKGFGRSVKAAASLPSIGDDFENRAQSITTK 380
           A+RFRTELLRRGVLLVPV+WG  +   +EKKGFG S KAA SLPSIG+DF+ RAQS+  +
Sbjct: 319 ADRFRTELLRRGVLLVPVVWGERKTPEIEKKGFGASSKAATSLPSIGEDFDTRAQSVVAQ 378

Query: 381 SRLQAEIRFKAEAVSPAEWERWITDQQKSKGVTPGEDVYIILRLDGRVRTSGKGMPDWPQ 440
           S+L+ EIRFKAE VSP EWERWI DQQ S+GV PG+DVYIILRLDGRVR SG+GMPDW +
Sbjct: 379 SKLKGEIRFKAETVSPGEWERWIRDQQISEGVNPGDDVYIILRLDGRVRRSGRGMPDWAE 438

Query: 441 IVEELPPLENLLSKLEK 449
           I +ELPP++++LSKLE+
Sbjct: 439 ISKELPPMDDVLSKLER 453

[Close]

BLAST of Spo07980.1 vs. TAIR (Arabidopsis)
Match: AT1G02910.1 (tetratricopeptide repeat (TPR)-containing protein)

HSP 1 Score: 609.4 bits (1570), Expect = 1.800e-174
Identity = 305/437 (69.79%), Postives = 367/437 (83.98%), Query Frame = 1


		  
Query: 21  NHHSTISKRRQWF-------FNSIPKYSTAHIRVRFSLITCCSSSSPPPPETAAQ--TAE 80
           N +S + +RR W        FNS   + + H+ V ++  +   SSSPP P +     TAE
Sbjct: 19  NLYSRVKQRRPWLPPGDATLFNSRRNWDS-HLFV-YASSSSSPSSSPPSPNSPTDDLTAE 78

Query: 81  SCVNTGLSLFSKGRVREALVQFDTALSLNPNTMEAQAALYNKACCHAYRGEGKQAAECLR 140
            CVNTGL LF +GRV++ALVQF+TALSL PN +E+QAA YNKACCHAYRGEGK+A +CLR
Sbjct: 79  LCVNTGLDLFKRGRVKDALVQFETALSLAPNPIESQAAYYNKACCHAYRGEGKKAVDCLR 138

Query: 141 TALKDYNIKFGTILNDPDLASFRALPEFKELQEEARLGGEDIGDSFRRDLKLISEVQAPF 200
            AL+DYN+KF TILNDPDLASFRALPEFKELQEEARLGGEDIGD+FRRDLKLISEV+APF
Sbjct: 139 IALRDYNLKFATILNDPDLASFRALPEFKELQEEARLGGEDIGDNFRRDLKLISEVRAPF 198

Query: 201 RGVRRFFYVAFAVAAGISTFFTIPLLFRAIQGGEGAPDLLDTAGNAAVNIGGFAILVALF 260
           RGVR+FFY AFA AAGIS FFT+P L +AI+GG+GAP+LL+T GNAA+NIGG  ++V+LF
Sbjct: 199 RGVRKFFYFAFAAAAGISMFFTVPRLVQAIRGGDGAPNLLETTGNAAINIGGIVVMVSLF 258

Query: 261 IWDNKKEEEQIAQISRDETLSRLPVRLSTNRIVELVQLRDAVRPVILAGKRESVSLAMQK 320
           +W+NKKEEEQ+ QI+RDETLSRLP+RLSTNR+VELVQLRD VRPVILAGK+E+V+LAMQK
Sbjct: 259 LWENKKEEEQMVQITRDETLSRLPLRLSTNRVVELVQLRDTVRPVILAGKKETVTLAMQK 318

Query: 321 AERFRTELLRRGVLLVPVIWGAVEAASVEKKGFGRSVKAAASLPSIGDDFENRAQSITTK 380
           A+RFRTELLRRGVLLVPV+WG  +   +EKKGFG S KAA SLPSIG+DF+ RAQS+  +
Sbjct: 319 ADRFRTELLRRGVLLVPVVWGERKTPEIEKKGFGASSKAATSLPSIGEDFDTRAQSVVAQ 378

Query: 381 SRLQAEIRFKAEAVSPAEWERWITDQQKSKGVTPGEDVYIILRLDGRVRTSGKGMPDWPQ 440
           S+L+ EIRFKAE VSP EWERWI DQQ S+GV PG+DVYIILRLDGRVR SG+GMPDW +
Sbjct: 379 SKLKGEIRFKAETVSPGEWERWIRDQQISEGVNPGDDVYIILRLDGRVRRSGRGMPDWAE 438

Query: 441 IVEELPPLENLLSKLEK 449
           I +ELPP++++LSKLE+
Sbjct: 439 ISKELPPMDDVLSKLER 453

[Close]

BLAST of Spo07980.1 vs. TAIR (Arabidopsis)
Match: AT4G28740.1 (FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 127.1 bits (318), Expect = 2.700e-29
Identity = 78/268 (29.10%), Postives = 135/268 (50.37%), Query Frame = 1


		  
Query: 180 DLKLISEVQAPFRGVRRFFYVAFAVAAGISTFFTIPLLFRAIQGGEGAPDLLDTAGNAAV 239
           D ++ SEV +PFR VR FFY+AF  +  +        L  A+     + ++L+      V
Sbjct: 94  DARIRSEVLSPFRSVRMFFYLAFIASGSLGGLIATSRLIGALANPARSGEVLEIVKGLGV 153

Query: 240 NIGGFAILVALFIWDNKKEEEQIAQISRDETLSRLPVRLS-TNRIVELVQLRDAVRPVIL 299
           +IG  ++   L+  +NK +  Q+A++SR+E L +L +R+   N+++ +  LR   R VI 
Sbjct: 154 DIGAASLFAFLYFNENKTKNAQMARLSREENLGKLKMRVEENNKVISVGDLRGVARLVIC 213

Query: 300 AGKRESVSLAMQKAERFRTELLRRGVLLVPVIWGAVEAASVEKKGFGRSVKAAASLPSIG 359
           AG  E +  A ++++ +   L+ RGV++V                   +     + P + 
Sbjct: 214 AGPAEFIEEAFKRSKEYTQGLVERGVVVV-------------------AYATDGNSPVLE 273

Query: 360 DDFENRAQSITTKSRLQAEIRFKAEAVSPAEWERWITDQQKSKGVTPGEDVYIILRLDGR 419
            D  + A    ++ R +    ++   V   EWE+W+ +Q+K   V+    VY+ LRLDGR
Sbjct: 274 FDETDIADEEMSQRRKKL---WRVTPVFVPEWEKWLNEQKKLANVSSDSPVYLSLRLDGR 333

Query: 420 VRTSGKGMPDWPQIVEELPPLENLLSKL 447
           VR SG G P W   V +LPP++ + + L
Sbjct: 334 VRASGVGYPPWQAFVAQLPPVKGMWTGL 339

[Close]

BLAST of Spo07980.1 vs. TAIR (Arabidopsis)
Match: AT1G55480.1 (protein containing PDZ domain, a K-box domain, and a TPR region)

HSP 1 Score: 56.2 bits (134), Expect = 5.900e-8
Identity = 31/95 (32.63%), Postives = 45/95 (47.37%), Query Frame = 1


		  
Query: 71  ESCVNTGLSLFSKGRVREALVQFDTALSLNPNTMEAQAALYNKACCHAYRGEGKQAAECL 130
           E  +  GL     G+  EAL +F++ L   P   EA  A YN ACC++   + +     L
Sbjct: 218 EKDLREGLQFSKNGKYEEALERFESVLGSKPTPEEASVASYNVACCYSKLNQVQAGLSAL 277

Query: 131 RTALKDYNIKFGTILNDPDLASFRALPEFKELQEE 166
             ALK     F  I +DPDL + R   +F  L ++
Sbjct: 278 EEALKSGYEDFKRIRSDPDLETLRKSKDFDPLLKQ 312

The following BLAST results are available for this feature:

BLAST of Spo07980.1 vs. NCBI nr
BLAST of Spo07980.1 vs. UniProtKB/TrEMBL
BLAST of Spo07980.1 vs. ExPASy Swiss-Prot
BLAST of Spo07980.1 vs. TAIR (Arabidopsis)

BLAST of Spo07980.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902210745\|gb\|KNA16520.1\|	4.5e-252	100.	hypothetical protein SOVF_0883...	[more]
gi\|731346530\|ref\|XP_010684503.1\|	1.8e-208	83.9	PREDICTED: protein LOW PSII AC...	[more]
gi\|1009148622\|ref\|XP_015892037.1\|	8.7e-187	75.6	PREDICTED: protein LOW PSII AC...	[more]
gi\|702435789\|ref\|XP_010069953.1\|	1.6e-185	76.0	PREDICTED: protein LOW PSII AC...	[more]
gi\|823188143\|ref\|XP_012490417.1\|	1.5e-183	74.2	PREDICTED: protein LOW PSII AC...	[more]

BLAST of Spo07980.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9RAK6_SPIOL	3.2e-252	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8C1A7_BETVU	1.3e-208	83.9	Uncharacterized protein OS=Bet...	[more]
A0A059AYJ5_EUCGR	1.1e-185	76.0	Uncharacterized protein OS=Euc...	[more]
A0A0D2SCC8_GOSRA	1.1e-183	74.2	Uncharacterized protein OS=Gos...	[more]
D7U260_VITVI	1.4e-183	75.0	Putative uncharacterized prote...	[more]

BLAST of Spo07980.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 1


Match Name	E-value	Identity	Description
LPA1_ARATH	3.2e-173	69.7	Protein LOW PSII ACCUMULATION ...	[more]

BLAST of Spo07980.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3


Match Name	E-value	Identity	Description
AT1G02910.1	1.8e-174	69.7	tetratricopeptide repeat (TPR)...	[more]
AT4G28740.1	2.7e-29	29.1	FUNCTIONS IN: molecular_functi...	[more]
AT1G55480.1	5.9e-8	32.6	protein containing PDZ domain,...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain	GENE3D	1.25.40.10		coord: 69..136 score: 1.
IPR011990	Tetratricopeptide-like helical domain	unknown	SSF48452	TPR-like	coord: 68..135 score: 3.37
IPR013026	Tetratricopeptide repeat-containing domain	PROFILE	PS50293	TPR_REGION	coord: 70..103 score: 10
IPR019734	Tetratricopeptide repeat	PROFILE	PS50005	TPR	coord: 70..103 score: 9
IPR021883	Protein of unknown function DUF3493	PFAM	PF11998	DUF3493	coord: 178..255 score: 1.1
None	No IPR available	PANTHER	PTHR17130	MITOCHONDRIAL OUTER MEMBRANE PROTEIN 25	coord: 55..447 score: 2.6E
None	No IPR available	PANTHER	PTHR17130:SF20	PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC	coord: 55..447 score: 2.6E

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010270	photosystem II oxygen evolving complex assembly
biological_process	GO:0046034	ATP metabolic process
biological_process	GO:0016049	cell growth
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0090503	RNA phosphodiester bond hydrolysis, exonucleolytic
biological_process	GO:0015979	photosynthesis
biological_process	GO:0010027	thylakoid membrane organization
biological_process	GO:0010228	vegetative to reproductive phase transition of meristem
biological_process	GO:0006508	proteolysis
biological_process	GO:0006465	signal peptide processing
biological_process	GO:0010155	regulation of proton transport
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0046777	protein autophosphorylation
biological_process	GO:0046939	nucleotide phosphorylation
biological_process	GO:0006354	DNA-templated transcription, elongation
biological_process	GO:0048193	Golgi vesicle transport
biological_process	GO:0016117	carotenoid biosynthetic process
biological_process	GO:0010264	myo-inositol hexakisphosphate biosynthetic process
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0006446	regulation of translational initiation
biological_process	GO:0006816	calcium ion transport
biological_process	GO:0006007	glucose catabolic process
biological_process	GO:0007030	Golgi organization
biological_process	GO:0006623	protein targeting to vacuole
biological_process	GO:1902600	proton transmembrane transport
biological_process	GO:0009651	response to salt stress
biological_process	GO:0055085	transmembrane transport
biological_process	GO:0007033	vacuole organization
biological_process	GO:0008152	metabolic process
biological_process	GO:0015991	ATP hydrolysis coupled proton transport
biological_process	GO:0000902	cell morphogenesis
cellular_component	GO:0005787	signal peptidase complex
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0033179	proton-transporting V-type ATPase, V0 domain
cellular_component	GO:0005840	ribosome
cellular_component	GO:0010287	plastoglobule
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0005774	vacuolar membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0000325	plant-type vacuole
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0005515	protein binding
molecular_function	GO:0015078	proton transmembrane transporter activity
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0042626	ATPase activity, coupled to transmembrane movement of substances
molecular_function	GO:0008233	peptidase activity
molecular_function	GO:0004017	adenylate kinase activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0004535	poly(A)-specific ribonuclease activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003743	translation initiation factor activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo03572	0.78	Barchart \| Table
Spo22583	0.75	Barchart \| Table
Spo18080	0.74	Barchart \| Table
Spo11317	0.71	Barchart \| Table
Spo16996	0.70	Barchart \| Table
Spo01714	0.70	Barchart \| Table
Spo24325	0.70	Barchart \| Table
Spo07619	0.68	Barchart \| Table
Spo24675	0.68	Barchart \| Table
Spo21215	0.68	Barchart \| Table
Spo02890	0.68	Barchart \| Table
Spo05073	0.68	Barchart \| Table
Spo01923	0.68	Barchart \| Table
Spo16695	0.67	Barchart \| Table
Spo27081	0.67	Barchart \| Table
Spo04653	0.67	Barchart \| Table
Spo07149	0.67	Barchart \| Table
Spo11417	0.67	Barchart \| Table
Spo01243	0.66	Barchart \| Table
Spo22683	0.66	Barchart \| Table
Spo23384	0.66	Barchart \| Table
Spo26430	0.66	Barchart \| Table
Spo03362	0.65	Barchart \| Table
Spo01925	0.65	Barchart \| Table
Spo22811	0.65	Barchart \| Table
Spo01261	0.65	Barchart \| Table
Spo02573	0.65	Barchart \| Table
Spo15881	0.65	Barchart \| Table
Spo18195	0.65	Barchart \| Table
Spo12302	0.65	Barchart \| Table