Spo05445 (gene) | SpinachBase

Overview


Name	Spo05445
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Histone H2A
Location	Super_scaffold_126 : 1476486 .. 1477685 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTGTGTTTTCTGTTCAAGATGATGAACTGATGATGAAATTGCATAATGCAGAATGAGATCGCGTTATTAAGTAAAATTCGGTAGCAGAATATTATAACTCTTCAAGGCTGTTGCATTCATGGTGATTCTCGATTTCTTGTGTATGAACTTATGGAAAATGGATGCCTGGAAACTCAGTTGCACGGTAATATTTCAAACATTCTTATATGTTAAGTTACTCGGACTTGGGTACTCATGTTAGACTAGGAAATGTATCTAGGATCAGACTCAGCTGCTCTATGTGAAAATTCCCATGTTAATAATCCAAAATTAAGTGTTAACCATCTGTAACTAATGTTTGAGTGTCAAGGATCCGATAAGGTGAAATGTAGAGTCCAGGTTGATCAGTGTTGAAAGTATAGTGTCAAGTTGAAAGTTCTATAGCATGAGAGGATGGAGAACCTACTATTTGTATTTGATCAATGTTTTTAGGTGTTTTCCTAGAATCAACTTTAACTTGCCATATACGAATGAAAATCTCTTTTGATATTGCAAGGTGACATTTTACAGCGCAAATATTTGGCTATTATTGATTAATTTGTCGATATCATAATTGAATTTGTTGTGGATCGAGTGTTGATTTGAGGAAATTTGTATAATACGCATACATGATTGTATGCTTTTAGTTGATAATTTTTATTCACTTTATGTGTGAAGGACTTTAAGGGAAATTAAAGGTATTTAAGAATTTAATTTGTTTGCTTTTAATGCAAGGATATTTAGCTTGAATTTACGTTGACTAATTAAAAGTTAAATGATTGAATTTGAAGCTGATTAGGTATTTGTGATTATGAATTAACATGTTCTGGAAGTGGATGAAAATGGCGCACGAGACAACAAGAAGATGAGAATCATACCAAGGCACATTCAATTGGCTATTAGGAACGATGAAGAGAATCATACCAGTTAAGCGAGGAGGCGGGTTTTGAGTATTATTGGTTGTTCTAAAAATATCATCCTGTCTTGATTTTATGTCTTCTTTTCCTGTCGTACTTTAAGTAGATTCTGCCTCTTTTATGTTGCAGGTAACAAAACAACACAGTAATGGCTGCAAAAAACTACTAGGATTGAACGATCCTGAAGAGAAGATGAGATTACTTCAGTTAGGGCAAGAGGAGGTTGCGAGAATGGAGAGGGAGCGGCTAAAGTTTAAGTAG

mRNA sequence

ATGCTTCAGAATATTATAACTCTTCAAGGCTGTTGCATTCATGGTGATTCTCGATTTCTTGTGTATGAACTTATGGAAAATGGATGCCTGGAAACTCAGTTGCACGTGGATGAAAATGGCGCACGAGACAACAAGAAGATGAGAATCATACCAAGGCACATTCAATTGGCTATTAGGAACGATGAAGAGAATCATACCAATTCTGCCTCTTTTATGTTGCAGGTAACAAAACAACACAGTAATGGCTGCAAAAAACTACTAGGATTGAACGATCCTGAAGAGAAGATGAGATTACTTCAGTTAGGGCAAGAGGAGGTTGCGAGAATGGAGAGGGAGCGGCTAAAGTTTAAGTAG

Coding sequence (CDS)

ATGCTTCAGAATATTATAACTCTTCAAGGCTGTTGCATTCATGGTGATTCTCGATTTCTTGTGTATGAACTTATGGAAAATGGATGCCTGGAAACTCAGTTGCACGTGGATGAAAATGGCGCACGAGACAACAAGAAGATGAGAATCATACCAAGGCACATTCAATTGGCTATTAGGAACGATGAAGAGAATCATACCAATTCTGCCTCTTTTATGTTGCAGGTAACAAAACAACACAGTAATGGCTGCAAAAAACTACTAGGATTGAACGATCCTGAAGAGAAGATGAGATTACTTCAGTTAGGGCAAGAGGAGGTTGCGAGAATGGAGAGGGAGCGGCTAAAGTTTAAGTAG

Protein sequence

MLQNIITLQGCCIHGDSRFLVYELMENGCLETQLHVDENGARDNKKMRIIPRHIQLAIRNDEENHTNSASFMLQVTKQHSNGCKKLLGLNDPEEKMRLLQLGQEEVARMERERLKFK

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo05445.1	Spo05445.1	mRNA

Homology

[Close]

BLAST of Spo05445.1 vs. NCBI nr
Match: gi|731316793|ref|XP_010665786.1| (PREDICTED: probable receptor-like protein kinase At1g80640 isoform X1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 70.5 bits (171), Expect = 2.200e-9
Identity = 30/39 (76.92%), Postives = 33/39 (84.62%), Query Frame = 1

		  
Query: 3   QNIITLQGCCIHGDSRFLVYELMENGCLETQLHVDENGA 42
           QNII L GCCIHGD+RFLVYE+MENGCLETQLH    G+
Sbjct: 202 QNIINLLGCCIHGDTRFLVYEIMENGCLETQLHGVSRGS 240

[Close]

BLAST of Spo05445.1 vs. NCBI nr
Match: gi|731316795|ref|XP_010665794.1| (PREDICTED: probable receptor-like protein kinase At1g80640 isoform X2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 70.5 bits (171), Expect = 2.200e-9
Identity = 30/39 (76.92%), Postives = 33/39 (84.62%), Query Frame = 1

		  
Query: 3   QNIITLQGCCIHGDSRFLVYELMENGCLETQLHVDENGA 42
           QNII L GCCIHGD+RFLVYE+MENGCLETQLH    G+
Sbjct: 202 QNIINLLGCCIHGDTRFLVYEIMENGCLETQLHGVSRGS 240

[Close]

BLAST of Spo05445.1 vs. NCBI nr
Match: gi|902187753|gb|KNA10981.1| (hypothetical protein SOVF_139360 [Spinacia oleracea])

HSP 1 Score: 70.1 bits (170), Expect = 2.900e-9
Identity = 32/39 (82.05%), Postives = 33/39 (84.62%), Query Frame = 1

		  
Query: 3   QNIITLQGCCIHGDSRFLVYELMENGCLETQLHVDENGA 42
           QNIITL G CIHGDSRFLVYELMENGCLETQLH    G+
Sbjct: 161 QNIITLLGYCIHGDSRFLVYELMENGCLETQLHGVSRGS 199

[Close]

BLAST of Spo05445.1 vs. NCBI nr
Match: gi|1021572801|ref|XP_016177494.1| (PREDICTED: probable receptor-like protein kinase At1g80640 [Arachis ipaensis])

HSP 1 Score: 63.9 bits (154), Expect = 2.100e-7
Identity = 29/39 (74.36%), Postives = 31/39 (79.49%), Query Frame = 1

		  
Query: 3   QNIITLQGCCIHGDSRFLVYELMENGCLETQLHVDENGA 42
           QNII L G CIHG+SRFLVYELMENG LETQLH    G+
Sbjct: 171 QNIIKLMGYCIHGESRFLVYELMENGSLETQLHGPNRGS 209

[Close]

BLAST of Spo05445.1 vs. NCBI nr
Match: gi|950971361|ref|XP_014500297.1| (PREDICTED: probable receptor-like protein kinase At1g80640 [Vigna radiata var. radiata])

HSP 1 Score: 63.9 bits (154), Expect = 2.100e-7
Identity = 29/39 (74.36%), Postives = 30/39 (76.92%), Query Frame = 1

		  
Query: 3   QNIITLQGCCIHGDSRFLVYELMENGCLETQLHVDENGA 42
           QNII L G C+HG SRFLVYELMENG LETQLH    GA
Sbjct: 189 QNIIKLMGYCVHGQSRFLVYELMENGSLETQLHGPNRGA 227

[Close]

BLAST of Spo05445.1 vs. UniProtKB/TrEMBL
Match: A0A0J8FTJ6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g031070 PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.600e-9
Identity = 30/39 (76.92%), Postives = 33/39 (84.62%), Query Frame = 1

		  
Query: 3   QNIITLQGCCIHGDSRFLVYELMENGCLETQLHVDENGA 42
           QNII L GCCIHGD+RFLVYE+MENGCLETQLH    G+
Sbjct: 202 QNIINLLGCCIHGDTRFLVYEIMENGCLETQLHGVSRGS 240

[Close]

BLAST of Spo05445.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QWS0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_139360 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.000e-9
Identity = 32/39 (82.05%), Postives = 33/39 (84.62%), Query Frame = 1

		  
Query: 3   QNIITLQGCCIHGDSRFLVYELMENGCLETQLHVDENGA 42
           QNIITL G CIHGDSRFLVYELMENGCLETQLH    G+
Sbjct: 161 QNIITLLGYCIHGDSRFLVYELMENGCLETQLHGVSRGS 199

[Close]

BLAST of Spo05445.1 vs. UniProtKB/TrEMBL
Match: I1M5X9_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_13G369100 PE=4 SV=2)

HSP 1 Score: 63.2 bits (152), Expect = 2.500e-7
Identity = 28/39 (71.79%), Postives = 31/39 (79.49%), Query Frame = 1

		  
Query: 3   QNIITLQGCCIHGDSRFLVYELMENGCLETQLHVDENGA 42
           QNII + G CIHG+SRFLVYELMENG LETQLH    G+
Sbjct: 189 QNIIKIMGYCIHGESRFLVYELMENGSLETQLHGPNRGS 227

[Close]

BLAST of Spo05445.1 vs. UniProtKB/TrEMBL
Match: F6HXT5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g09090 PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.500e-7
Identity = 25/39 (64.10%), Postives = 33/39 (84.62%), Query Frame = 1

		  
Query: 3   QNIITLQGCCIHGDSRFLVYELMENGCLETQLHVDENGA 42
           QNI++L GCCIHG++RFLVYE+M+NG LE QLH   +G+
Sbjct: 152 QNIVSLLGCCIHGETRFLVYEMMQNGSLEAQLHGPSHGS 190

[Close]

BLAST of Spo05445.1 vs. UniProtKB/TrEMBL
Match: A0A0B2RF00_GLYSO (Putative receptor-like protein kinase OS=Glycine soja GN=glysoja_036208 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.500e-7
Identity = 28/39 (71.79%), Postives = 31/39 (79.49%), Query Frame = 1

		  
Query: 3   QNIITLQGCCIHGDSRFLVYELMENGCLETQLHVDENGA 42
           QNII + G CIHG+SRFLVYELMENG LETQLH    G+
Sbjct: 189 QNIIKMMGYCIHGESRFLVYELMENGSLETQLHGPNRGS 227

[Close]

BLAST of Spo05445.1 vs. TAIR (Arabidopsis)
Match: AT5G54640.1 (Histone superfamily protein)

HSP 1 Score: 49.3 bits (116), Expect = 1.900e-6
Identity = 22/30 (73.33%), Postives = 25/30 (83.33%), Query Frame = 1

		  
Query: 34 LHVDENGARDNKKMRIIPRHIQLAIRNDEE 64
          L +  N ARDNKK RI+PRHIQLA+RNDEE
Sbjct: 65 LELAGNAARDNKKTRIVPRHIQLAVRNDEE 94

[Close]

BLAST of Spo05445.1 vs. TAIR (Arabidopsis)
Match: AT1G51060.1 (histone H2A 10)

HSP 1 Score: 49.3 bits (116), Expect = 1.900e-6
Identity = 22/30 (73.33%), Postives = 25/30 (83.33%), Query Frame = 1

		  
Query: 34 LHVDENGARDNKKMRIIPRHIQLAIRNDEE 64
          L +  N ARDNKK RI+PRHIQLA+RNDEE
Sbjct: 65 LELAGNAARDNKKTRIVPRHIQLAVRNDEE 94

[Close]

BLAST of Spo05445.1 vs. TAIR (Arabidopsis)
Match: AT1G08880.1 (Histone superfamily protein)

HSP 1 Score: 49.3 bits (116), Expect = 1.900e-6
Identity = 22/30 (73.33%), Postives = 25/30 (83.33%), Query Frame = 1

		  
Query: 34  LHVDENGARDNKKMRIIPRHIQLAIRNDEE 64
           L +  N ARDNKK RI+PRHIQLA+RNDEE
Sbjct: 71  LELAGNAARDNKKTRIVPRHIQLAVRNDEE 100

[Close]

BLAST of Spo05445.1 vs. TAIR (Arabidopsis)
Match: AT1G54690.1 (gamma histone variant H2AX)

HSP 1 Score: 49.3 bits (116), Expect = 1.900e-6
Identity = 22/30 (73.33%), Postives = 25/30 (83.33%), Query Frame = 1

		  
Query: 34  LHVDENGARDNKKMRIIPRHIQLAIRNDEE 64
           L +  N ARDNKK RI+PRHIQLA+RNDEE
Sbjct: 71  LELAGNAARDNKKTRIVPRHIQLAVRNDEE 100

[Close]

BLAST of Spo05445.1 vs. TAIR (Arabidopsis)
Match: AT4G27230.1 (histone H2A 2)

HSP 1 Score: 49.3 bits (116), Expect = 1.900e-6
Identity = 22/30 (73.33%), Postives = 25/30 (83.33%), Query Frame = 1

		  
Query: 34 LHVDENGARDNKKMRIIPRHIQLAIRNDEE 64
          L +  N ARDNKK RI+PRHIQLA+RNDEE
Sbjct: 65 LELAGNAARDNKKTRIVPRHIQLAVRNDEE 94

The following BLAST results are available for this feature:

BLAST of Spo05445.1 vs. NCBI nr
BLAST of Spo05445.1 vs. UniProtKB/TrEMBL
BLAST of Spo05445.1 vs. ExPASy Swiss-Prot
BLAST of Spo05445.1 vs. TAIR (Arabidopsis)

BLAST of Spo05445.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
gi\|731316793\|ref\|XP_010665786.1\|	2.2e-9	76.9	PREDICTED: probable receptor-l...	[more]
gi\|731316795\|ref\|XP_010665794.1\|	2.2e-9	76.9	PREDICTED: probable receptor-l...	[more]
gi\|902187753\|gb\|KNA10981.1\|	2.9e-9	82.0	hypothetical protein SOVF_1393...	[more]
gi\|1021572801\|ref\|XP_016177494.1\|	2.1e-7	74.3	PREDICTED: probable receptor-l...	[more]
gi\|950971361\|ref\|XP_014500297.1\|	2.1e-7	74.3	PREDICTED: probable receptor-l...	[more]

BLAST of Spo05445.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0J8FTJ6_BETVU	1.6e-9	76.9	Uncharacterized protein OS=Bet...	[more]
A0A0K9QWS0_SPIOL	2.0e-9	82.0	Uncharacterized protein OS=Spi...	[more]
I1M5X9_SOYBN	2.5e-7	71.7	Uncharacterized protein OS=Gly...	[more]
F6HXT5_VITVI	2.5e-7	64.1	Putative uncharacterized prote...	[more]
A0A0B2RF00_GLYSO	2.5e-7	71.7	Putative receptor-like protein...	[more]

BLAST of Spo05445.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

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x 1


Match Name	E-value	Identity	Description

BLAST of Spo05445.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
AT5G54640.1	1.9e-6	73.3	Histone superfamily protein	[more]
AT1G51060.1	1.9e-6	73.3	histone H2A 10	[more]
AT1G08880.1	1.9e-6	73.3	Histone superfamily protein	[more]
AT1G54690.1	1.9e-6	73.3	gamma histone variant H2AX	[more]
AT4G27230.1	1.9e-6	73.3	histone H2A 2	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001245	Serine-threonine/tyrosine-protein kinase catalytic domain	PFAM	PF07714	Pkinase_Tyr	coord: 3..84 score: 1.
IPR009072	Histone-fold	GENE3D	1.10.20.10		coord: 38..66 score: 9.7
IPR009072	Histone-fold	unknown	SSF47113	Histone-fold	coord: 39..63 score: 1.3
IPR011009	Protein kinase-like domain	unknown	SSF56112	Protein kinase-like (PK-like)	coord: 3..41 score: 8.5
None	No IPR available	GENE3D	3.30.200.20		coord: 3..27 score: 2.
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 41..63 score: 1.5

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006468	protein phosphorylation
biological_process	GO:0005983	starch catabolic process
biological_process	GO:0006508	proteolysis
biological_process	GO:0006457	protein folding
biological_process	GO:0015996	chlorophyll catabolic process
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0009069	serine family amino acid metabolic process
biological_process	GO:0031047	gene silencing by RNA
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0009737	response to abscisic acid
biological_process	GO:0009409	response to cold
biological_process	GO:0019252	starch biosynthetic process
biological_process	GO:0006470	protein dephosphorylation
biological_process	GO:0043085	positive regulation of catalytic activity
biological_process	GO:0046838	phosphorylated carbohydrate dephosphorylation
biological_process	GO:0000023	maltose metabolic process
biological_process	GO:0009269	response to desiccation
biological_process	GO:0009651	response to salt stress
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016020	membrane
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0008233	peptidase activity
molecular_function	GO:0004672	protein kinase activity
molecular_function	GO:0032440	2-alkenal reductase [NAD(P)] activity
molecular_function	GO:0051082	unfolded protein binding
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0017111	nucleoside-triphosphatase activity
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0019905	syntaxin binding
molecular_function	GO:0050308	sugar-phosphatase activity
molecular_function	GO:2001070	starch binding
molecular_function	GO:0008138	protein tyrosine/serine/threonine phosphatase activity
molecular_function	GO:0004674	protein serine/threonine kinase activity
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003676	nucleic acid binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo00190	0.75	Barchart \| Table
Spo05444	0.75	Barchart \| Table
Spo07079	0.73	Barchart \| Table
Spo02499	0.73	Barchart \| Table
Spo14589	0.72	Barchart \| Table
Spo08504	0.72	Barchart \| Table
Spo03609	0.72	Barchart \| Table
Spo07209	0.72	Barchart \| Table
Spo23771	0.72	Barchart \| Table
Spo19793	0.71	Barchart \| Table
Spo01801	0.71	Barchart \| Table
Spo17630	0.71	Barchart \| Table
Spo26995	0.70	Barchart \| Table
Spo19641	0.70	Barchart \| Table
Spo15089	0.70	Barchart \| Table
Spo11069	0.69	Barchart \| Table
Spo08416	0.69	Barchart \| Table
Spo05928	0.69	Barchart \| Table
Spo17235	0.69	Barchart \| Table
Spo25505	0.69	Barchart \| Table
Spo17098	0.69	Barchart \| Table
Spo02749	0.69	Barchart \| Table
Spo25016	0.69	Barchart \| Table
Spo08147	0.69	Barchart \| Table
Spo21422	0.69	Barchart \| Table
Spo27331	0.68	Barchart \| Table
Spo17225	0.68	Barchart \| Table
Spo04639	0.68	Barchart \| Table
Spo16314	0.68	Barchart \| Table
Spo13174	0.68	Barchart \| Table
Spo14240	0.68	Barchart \| Table
Spo02065	0.68	Barchart \| Table
Spo24861	0.68	Barchart \| Table
Spo03357	0.68	Barchart \| Table
Spo23856	0.68	Barchart \| Table
Spo02254	0.68	Barchart \| Table
Spo10162	0.68	Barchart \| Table
Spo10233	0.68	Barchart \| Table
Spo01196	0.68	Barchart \| Table
Spo23673	0.68	Barchart \| Table
Spo22322	0.68	Barchart \| Table
Spo20788	0.68	Barchart \| Table
Spo11680	0.67	Barchart \| Table
Spo07035	0.67	Barchart \| Table
Spo03002	0.67	Barchart \| Table
Spo08884	0.67	Barchart \| Table
Spo16584	0.67	Barchart \| Table
Spo18116	0.67	Barchart \| Table
Spo01799	0.67	Barchart \| Table
Spo19807	0.67	Barchart \| Table
Spo26214	0.67	Barchart \| Table
Spo11673	0.66	Barchart \| Table
Spo22436	0.66	Barchart \| Table
Spo22458	0.66	Barchart \| Table
Spo18776	0.66	Barchart \| Table
Spo10568	0.66	Barchart \| Table
Spo19554	0.66	Barchart \| Table
Spo08150	0.66	Barchart \| Table
Spo11190	0.66	Barchart \| Table
Spo04095	0.66	Barchart \| Table
Spo05269	0.66	Barchart \| Table
Spo15243	0.66	Barchart \| Table
Spo15391	0.66	Barchart \| Table
Spo13320	0.66	Barchart \| Table
Spo05450	0.66	Barchart \| Table
Spo11384	0.66	Barchart \| Table
Spo11160	0.66	Barchart \| Table
Spo17784	0.66	Barchart \| Table
Spo25879	0.66	Barchart \| Table
Spo16804	0.65	Barchart \| Table
Spo17123	0.65	Barchart \| Table
Spo11640	0.65	Barchart \| Table
Spo17386	0.65	Barchart \| Table
Spo18179	0.65	Barchart \| Table
Spo19825	0.65	Barchart \| Table
Spo20858	0.65	Barchart \| Table
Spo10895	0.65	Barchart \| Table
Spo10860	0.65	Barchart \| Table
Spo10661	0.65	Barchart \| Table
Spo23841	0.65	Barchart \| Table
Spo24667	0.65	Barchart \| Table
Spo05897	0.65	Barchart \| Table
Spo05621	0.65	Barchart \| Table
Spo12507	0.65	Barchart \| Table