Spo20155 (gene)

Overview
NameSpo20155
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSuper_scaffold_170 : 440365 .. 444202 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGACTTAAGAAAGGTTTAAGTAATTCAAACTCCATTAATTTTCTATGTATAGCCGGTTGTATATTGAGATTGGTAAAATCAAAGCTAATGAGAGAAGGAGAAAAAAAAAGTCCCTTAGTGTATCTTGTAAATATAGAACAACCATTTGTACGGTGGAAATTTTCTCCTCAATGACACTATTGATGAATTTTATGCTACATTCATATAAATACAAAATCATAATCTCTCCGCCCCTCATAGATCACCCCTACTAAATTTTCACTTCATTAAGGATAATGAAGCAGAGATTGGGGTAAAGTTGGGTTGGGGAGAGAAATATTTCTTGTTTTTTTCATACTTATTTAGAGGCTTAATAGAAGAGAAAAGAGGTCATTGTCTTTTTCCTTCTCATTGCCTCAATTTTATTAAAAAAAATGGGCTCTAATAACATGTAAAATTGAAGAGAAAATATATTATTTTGTTGTATTATTTATAGGCATACACCTCTATCTATATTACAAACTACATATCTTACACTTTATAGTTTCCTAAGTTATATAGACTTCTATCCTGTAATCTTATATCATATAGCTGAGATATAATATAATTCTATCACATACGATATTCTATCATTTAGGAAACATTATTGATATCTCAACAGGACAAATGGTTTTACAAGTGGGAAAATTATAATAGGTATTAGACAATCTAAGTGACATATATTTATGAAATTAGGTCGATCTTGAGAACAAACACATTCAAAATCAGAAATTACTAGTGGAATATTATTTTTATTATAAAATTTACAATTCACCATCACTTAAAGATAAGTCAACAGATCAAAGACATTTGAAACCATAAGTAGTCCAGGACTTAAGTAGTAGTAGAATACGGAGTAATAGTGTTGAGGATAACGTCTTTCTTTTCGAACTCACCAATTATCTCAACATAATAGGAACGCCTTTCGCTTCTCTTACGCAAAATTATGTTCAATCCGTATTTGATTTTTTGGAGTCAAAACCAAGCTCTGAAATCTGCATTGGTTTTTCGAAGCAAAAGCAAACTTAGATGTACTCGAATTAGACGTGATCCTAAGTACGGTCTTTTTTTCTCCAGCCCAAACTCACCTCAACTTACAAGCGTAATTAATCTTCCAATATAGGTCTGTGGGTAGACCTATAAGATAACTAATCTCAACAGTTCCAACTATGGCTAAATTAGCCACGAAAATATCAACATAGGTAAAGCAATCACTCATAATTTTATTTTTCTCCACTAACTAACAATGCAATCAAACTCATATCCTAAGCTCTTCGAATTCCAATTTCAGCGAAAATCTTCATTGATTGAAGTTAATGAATCCTGATGATGGATTGTATTTTCTAATCCACCGGGAGGGGATAATTTATGTAAACGGTCCTTAACATCTTTTTAGACTCTTGATATCATGCTAAATTATGGGGAAATTATTATTTGATTGTCTCGTATTATTTGTGGGTATACGCCTCTAAATATATTACAAACTAGATATCATATATACTTCGTAGATTTCCTAAGTCCAATTATAAGGAGTCAAAATTCTCTTTCCCATAATTTGCACTCCCTCTATTCCTAAATAAGTGTCATATTTCTATTTATAGCGTTCCCTAATAAGTATCCATTTTTCATTTTTAGACATGTAATTTTTCCATTTTTTCATAAATCAAGATTATTTTTTCTTACACATTCTATGTTTTTCCTACTTTTTCATCTCCACATCCACTTTTATTTGTACTTTATCAATAATCAATTATCTACTTTATCCTTTCCCCAGAAAAACACTCTCAACCATTGTTTTTTTTATGCACTTCTCATTTTTCTTAATCCAATCCCCATACATTCTTCCAAATAAGACACTTATTTATGAACGGAGGGAGTACTATATACTTACGAATTACAAAAGAAAAAAAAGAGTACTTTTTCTATTGGTTGATTGTTAAACTACAGAGGATAACATTAAGACGATAATATAACTCAACAGCTTAGTCATAACTTGGTTGCATCATTGGTTATATAGGAAACCACAATATAATTATACTAGGTTTATGACACTATTAGATTCCTAAACTAACACAAATCTAGTTTCCTAAACATACTAGAACCCTAAATGTACCATAACTCTAACAATAATATTTGTAATTAGTTATACCCCATACATTTATATTTTCATACTCATACTTATAATACGAGTTAAGAAAACATTAAGGACTAATCTGATTTGATTTTTCTAATATGATCTAATAAACAATATAAATAAGGTCAACAAAACAAAATTTTAAACTCGTTGCCAGCACTCAAATAAGAGAATCACGAGTGACGCACCTTCTTTATGGTCACTTTGTTAGCATAGCTTAAGAGGACCTTAATCGATCTTGAAGGTGATCCCGCGCAACACACGCCTCTCTTTCTCTCTCCTTTTTTGCCACTTGGCCTTTCGCATTTGGCTTCCTTTCAAATTCCCTCTAAAAAGTTTGTTTTCTTTCTTCAACAAAATAAAAACCGAAAATATCTTCCAATTTATTTTAGTTTTTCTCCCAAATTTTCTCTTTCTCTCATTTCTTCCAGAGATTTCTCATCTTTTTGTTTTCCCTTTTTATCTCTTCATACCCACCTGAGATTTCGTTCCTTTTCACCTGAAAATTTCTGGAAAGAGAATTTTTTTTATTTTATAAAATATTATTGATTTTTGTTGATTTGTTCCTCAATTATTGCTCTGCTTTTGCTGATCGTACTTGGAATGCATTGGTATGTTTGTTAATCTATATGATTTATGATGACGAATTATTGTAAATTACTGCGTGCAATTCAATTTGAAATTATACGATTTGTAAAGTTTGATAAAAATTGGAAATATTCCCGTAAATTTCCGTACTTTTAATTTTATTCTGTTGATTAATTCATTGGTTTTTTATGTTCCCAGAAATTTCCCAGTAATCAGTGTAAATTTAAGTGTATGGTTTTTTTTTTGATTGATTAGCTTATTGGGTTTTTTTTTCTGTTGTTTTGTTCTATGTACTACGTACTTGACAATTGTGGTTGGAATTATTTGTTGCTAATTTAAGCATCTGGGTTTTGTTTAGATTTAAGCATAGGAAGAAGATAGCATAATTGCCCTAAATTATTGTTCTTGATTGGTTGATATAAATGCGGATTACTTGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTGTTGTGATGATTACTGTGGTTTTATGTTAATTCCTGAATCTGGGTTTCCAACATGTAAGCATATGAAATAATTAAGATAACATCACCGAAATCGGGTCTAGTATTCGGTATTCGCAGCTTTTATTAATGCGTATCTTGTTTAAGTGGATGGCAACTAGTTTAGTTCGCAGTCTTAGGGTGTGGCATCGAATATTTAAATCCTGTCTACATCAGTGCCATTTGCGAGTCTCTATTAAAATAAAAATTTACATCTTTGAATATATTGCTGATTTAGGAAGCACATGTGTTCTATGAGAGCTGACTACATGGAACTTTTGCTTATATGTTTTATTGTTGAATATGTTTGATTTGCAGAACTTGTAAGGTGTATTGTATTGGCATGGACAGCGAGGAGAAATAGGATTTGCAAAGCTTCAGAAAGCTGTATTTGGAAAGCTACCAAGAATTCCTCGTACATAACATATACGGTTATATACTCCATATATAGTGGGTGTAGATAG

mRNA sequence

ATGAGACTTAAGAAAGGTGATCCCGCGCAACACACGCCTCTCTTTCTCTCTCCTTTTTTGCCACTTGGCCTTTCGCATTTGGCTTCCTTTCAAATTCCCTCTAAAAAGTTTGTTTTCTTTCTTCAACAAAATAAAAACCGAAAATATCTTCCAATTTATTTTAGTTTTTCTCCCAAATTTTCTCTTTCTCTCATTTCTTCCAGAGATTTCTCATCTTTTTGTTTTCCCTTTTTATCTCTTCATACCCACCTGAGATTTCAACTTGTAAGGTGTATTGTATTGGCATGGACAGCGAGGAGAAATAGGATTTGCAAAGCTTCAGAAAGCTGTATTTGGAAAGCTACCAAGAATTCCTCGTACATAACATATACGGTTATATACTCCATATATAGTGGGTGTAGATAG

Coding sequence (CDS)

ATGAGACTTAAGAAAGGTGATCCCGCGCAACACACGCCTCTCTTTCTCTCTCCTTTTTTGCCACTTGGCCTTTCGCATTTGGCTTCCTTTCAAATTCCCTCTAAAAAGTTTGTTTTCTTTCTTCAACAAAATAAAAACCGAAAATATCTTCCAATTTATTTTAGTTTTTCTCCCAAATTTTCTCTTTCTCTCATTTCTTCCAGAGATTTCTCATCTTTTTGTTTTCCCTTTTTATCTCTTCATACCCACCTGAGATTTCAACTTGTAAGGTGTATTGTATTGGCATGGACAGCGAGGAGAAATAGGATTTGCAAAGCTTCAGAAAGCTGTATTTGGAAAGCTACCAAGAATTCCTCGTACATAACATATACGGTTATATACTCCATATATAGTGGGTGTAGATAG

Protein sequence

MRLKKGDPAQHTPLFLSPFLPLGLSHLASFQIPSKKFVFFLQQNKNRKYLPIYFSFSPKFSLSLISSRDFSSFCFPFLSLHTHLRFQLVRCIVLAWTARRNRICKASESCIWKATKNSSYITYTVIYSIYSGCR
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo20155.1Spo20155.1mRNA


Homology
The following BLAST results are available for this feature:
BLAST of Spo20155.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo20155.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo20155.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo20155.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000023 maltose metabolic process
biological_process GO:0015706 nitrate transport
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0019216 regulation of lipid metabolic process
biological_process GO:0009408 response to heat
biological_process GO:0009416 response to light stimulus
biological_process GO:0006364 rRNA processing
biological_process GO:0019748 secondary metabolic process
biological_process GO:0046838 phosphorylated carbohydrate dephosphorylation
biological_process GO:0044272 sulfur compound biosynthetic process
biological_process GO:0006636 unsaturated fatty acid biosynthetic process
biological_process GO:0006766 vitamin metabolic process
biological_process GO:0010028 xanthophyll cycle
biological_process GO:0010106 cellular response to iron ion starvation
biological_process GO:0006826 iron ion transport
biological_process GO:0006468 protein phosphorylation
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0010167 response to nitrate
biological_process GO:0006970 response to osmotic stress
biological_process GO:0009069 serine family amino acid metabolic process
biological_process GO:0016049 cell growth
biological_process GO:0000902 cell morphogenesis
biological_process GO:0006888 ER to Golgi vesicle-mediated transport
biological_process GO:0061025 membrane fusion
biological_process GO:0006913 nucleocytoplasmic transport
biological_process GO:0006623 protein targeting to vacuole
biological_process GO:0032482 Rab protein signal transduction
biological_process GO:0006525 arginine metabolic process
biological_process GO:0006420 arginyl-tRNA aminoacylation
biological_process GO:0006560 proline metabolic process
biological_process GO:0008152 metabolic process
biological_process GO:0006655 phosphatidylglycerol biosynthetic process
biological_process GO:0000096 sulfur amino acid metabolic process
biological_process GO:0031408 oxylipin biosynthetic process
biological_process GO:0001510 RNA methylation
biological_process GO:0005983 starch catabolic process
biological_process GO:0019252 starch biosynthetic process
biological_process GO:0006633 fatty acid biosynthetic process
biological_process GO:0042967 obsolete acyl-carrier-protein biosynthetic process
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006470 protein dephosphorylation
biological_process GO:0009106 lipoate metabolic process
biological_process GO:0043085 positive regulation of catalytic activity
biological_process GO:0051604 protein maturation
biological_process GO:0006626 protein targeting to mitochondrion
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0008652 cellular amino acid biosynthetic process
biological_process GO:0009108 coenzyme biosynthetic process
biological_process GO:0009072 aromatic amino acid family metabolic process
biological_process GO:0016117 carotenoid biosynthetic process
biological_process GO:0030154 cell differentiation
biological_process GO:0009965 leaf morphogenesis
biological_process GO:0009695 jasmonic acid biosynthetic process
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0006546 glycine catabolic process
biological_process GO:0015995 chlorophyll biosynthetic process
cellular_component GO:0005886 plasma membrane
cellular_component GO:0000139 Golgi membrane
cellular_component GO:0005789 endoplasmic reticulum membrane
cellular_component GO:0009507 chloroplast
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0031977 thylakoid lumen
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005835 fatty acid synthase complex
cellular_component GO:0005768 endosome
cellular_component GO:0005840 ribosome
cellular_component GO:0005802 trans-Golgi network
cellular_component GO:0005773 vacuole
molecular_function GO:0004814 arginine-tRNA ligase activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0019003 GDP binding
molecular_function GO:0008138 protein tyrosine/serine/threonine phosphatase activity
molecular_function GO:2001070 starch binding
molecular_function GO:0050308 sugar-phosphatase activity
molecular_function GO:0032440 2-alkenal reductase [NAD(P)] activity
molecular_function GO:0004674 protein serine/threonine kinase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0004316 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity
molecular_function GO:0051287 NAD binding
molecular_function GO:0046422 violaxanthin de-epoxidase activity
molecular_function GO:0016757 transferase activity, transferring glycosyl groups
RNA-Seq Expression