Spo20152 (gene) | SpinachBase

Overview


Name	Spo20152
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	F-box family protein
Location	Super_scaffold_170 : 490035 .. 491245 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAAGTACAACATGTAACCAGTATCACGAACTGAAAAATATGAATGCTCAATTACTTTAGAAATGGAAACCAGAAAAAAGAAAGAATGAAAATAAGAGGTGAAGAAATGAAATTTTTTGGCGGTGAAGAATGAATGAAAATAAGAGGTGAAGAATGGAAAAAAGATCAGTAAATGTTTGGCGGGAAAATAAAAGTGGATAGTATGGCGCAATTTCATCCCGCCTAACAGATGCGAATGGCGCAAATGGCTGAAATATTTTGCCGCCCATTATCTTCCTTTCTGAAATTTTTTCCCTCTTTTTTTAGTGAAATTTGTGACTTGACATCATTTAATTGGTGGTGTGCAAGATACCTTTGCACACCAAGTATATCCCTAGCCTTTTCCAGATGTCTAAGTTATTAGTGGAAGTTGAGGAGGCTAAATTAATTTTGGTCTAACTCAAGAATTGTCCTGTTGTTGGAAAAACTGGAAACCCGTGAGACAAGTGATATTGCCCATGCCCCCTCTTTTCCACACAAGACACAACCTTCGTCCCCACCTTTTTGCTCTCACACAGTCTCTCTCCCTATTATCTCCACAACTTTTACTCTTCTCCCACCATTAAACTCAAGCTTCCCCATCAAACCAGTCTCCCACCATGAAGCGAGCCATGAACTCCCAACCCGAATCCGAATCAGAATCCACTATCAATCCCGCAATAAACACCAAAAAACCCAAATTCGCCTCCAATCCCGATCAAACCATCCCTAATAATAATCACGATCAACAATTCCACGATTCCGATTGCGATTCGGAATTCGCAAAGCTAGACGAGAATCTACTCTACGAAGTATTCAAGCACGCCGATGCGAAAACCCTAGCTGTAGCATCATGCGTCAGCAAGCGGTGGCATCGGACGGCTCAGGATGAGCGACTATGGGAGCTGATCTGTACTCGCCATTGGAGTAACAGTATTAATTACGGTACGAGACAACTCAGATCTGTTGTTCTTGCTCTGGGTGGGTTTCGTCGTCTTCACGCGCTTTACCTCTCCAAAACCGTCCCCTCTATGCCGGGTTCGCCGATTCTGCCGCCATCTTCGTCGATTCAGGCGCGTGTTGTCAAGGGTGGGAATAAGAGATGGGGGAAGGATGAGGTTAATTTGTCATTATCTCTTCTCTCGATTAGATATTATGAGAAAATGAATTTGGCTAACAAGAGACCATGA

mRNA sequence

ATGTCAAGTACAACATCTTCCCCATCAAACCAGTCTCCCACCATGAAGCGAGCCATGAACTCCCAACCCGAATCCGAATCAGAATCCACTATCAATCCCGCAATAAACACCAAAAAACCCAAATTCGCCTCCAATCCCGATCAAACCATCCCTAATAATAATCACGATCAACAATTCCACGATTCCGATTGCGATTCGGAATTCGCAAAGCTAGACGAGAATCTACTCTACGAAGTATTCAAGCACGCCGATGCGAAAACCCTAGCTGTAGCATCATGCGTCAGCAAGCGGTGGCATCGGACGGCTCAGGATGAGCGACTATGGGAGCTGATCTGTACTCGCCATTGGAGTAACAGTATTAATTACGGTACGAGACAACTCAGATCTGTTGTTCTTGCTCTGGGTGGGTTTCGTCGTCTTCACGCGCTTTACCTCTCCAAAACCGTCCCCTCTATGCCGGGTTCGCCGATTCTGCCGCCATCTTCGTCGATTCAGGCGCGTGTTGTCAAGGGTGGGAATAAGAGATGGGGGAAGGATGAGGTTAATTTGTCATTATCTCTTCTCTCGATTAGATATTATGAGAAAATGAATTTGGCTAACAAGAGACCATGA

Coding sequence (CDS)

ATGTCAAGTACAACATCTTCCCCATCAAACCAGTCTCCCACCATGAAGCGAGCCATGAACTCCCAACCCGAATCCGAATCAGAATCCACTATCAATCCCGCAATAAACACCAAAAAACCCAAATTCGCCTCCAATCCCGATCAAACCATCCCTAATAATAATCACGATCAACAATTCCACGATTCCGATTGCGATTCGGAATTCGCAAAGCTAGACGAGAATCTACTCTACGAAGTATTCAAGCACGCCGATGCGAAAACCCTAGCTGTAGCATCATGCGTCAGCAAGCGGTGGCATCGGACGGCTCAGGATGAGCGACTATGGGAGCTGATCTGTACTCGCCATTGGAGTAACAGTATTAATTACGGTACGAGACAACTCAGATCTGTTGTTCTTGCTCTGGGTGGGTTTCGTCGTCTTCACGCGCTTTACCTCTCCAAAACCGTCCCCTCTATGCCGGGTTCGCCGATTCTGCCGCCATCTTCGTCGATTCAGGCGCGTGTTGTCAAGGGTGGGAATAAGAGATGGGGGAAGGATGAGGTTAATTTGTCATTATCTCTTCTCTCGATTAGATATTATGAGAAAATGAATTTGGCTAACAAGAGACCATGA

Protein sequence

MSSTTSSPSNQSPTMKRAMNSQPESESESTINPAINTKKPKFASNPDQTIPNNNHDQQFHDSDCDSEFAKLDENLLYEVFKHADAKTLAVASCVSKRWHRTAQDERLWELICTRHWSNSINYGTRQLRSVVLALGGFRRLHALYLSKTVPSMPGSPILPPSSSIQARVVKGGNKRWGKDEVNLSLSLLSIRYYEKMNLANKRP

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo20152.1	Spo20152.1	mRNA

Homology

[Close]

BLAST of Spo20152.1 vs. NCBI nr
Match: gi|902038256|gb|KNA02713.1| (hypothetical protein SOVF_216090 [Spinacia oleracea])

HSP 1 Score: 381.3 bits (978), Expect = 1.000e-102
Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 1

		  
Query: 15  MKRAMNSQPESESESTINPAINTKKPKFASNPDQTIPNNNHDQQFHDSDCDSEFAKLDEN 74
           MKRAMNSQPESESESTINPAINTKKPKFASNPDQTIPNNNHDQQFHDSDCDSEFAKLDEN
Sbjct: 1   MKRAMNSQPESESESTINPAINTKKPKFASNPDQTIPNNNHDQQFHDSDCDSEFAKLDEN 60

Query: 75  LLYEVFKHADAKTLAVASCVSKRWHRTAQDERLWELICTRHWSNSINYGTRQLRSVVLAL 134
           LLYEVFKHADAKTLAVASCVSKRWHRTAQDERLWELICTRHWSNSINYGTRQLRSVVLAL
Sbjct: 61  LLYEVFKHADAKTLAVASCVSKRWHRTAQDERLWELICTRHWSNSINYGTRQLRSVVLAL 120

Query: 135 GGFRRLHALYLSKTVPSMPGSPILPPSSSIQARVVKGGNKRWGKDEVNLSLSLLSIRYYE 194
           GGFRRLHALYLSKTVPSMPGSPILPPSSSIQARVVKGGNKRWGKDEVNLSLSLLSIRYYE
Sbjct: 121 GGFRRLHALYLSKTVPSMPGSPILPPSSSIQARVVKGGNKRWGKDEVNLSLSLLSIRYYE 180

Query: 195 KMNLANKRP 204
           KMNLANKRP
Sbjct: 181 KMNLANKRP 189

[Close]

BLAST of Spo20152.1 vs. NCBI nr
Match: gi|731378781|ref|XP_010668269.1| (PREDICTED: F-box protein GID2-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 224.2 bits (570), Expect = 2.100e-55
Identity = 126/193 (65.28%), Postives = 138/193 (71.50%), Query Frame = 1

		  
Query: 15  MKRAMNSQPESESESTINPAINTKKPKFASNPDQTIPNNNHDQQFH---DSDCDSEFAKL 74
           MKR+M SQP+           N+KK KF   PDQ     +         D DCDSEFAKL
Sbjct: 1   MKRSMASQPDLPHTPK-----NSKKLKFKQIPDQIDAKTDEHIMISPQIDFDCDSEFAKL 60

Query: 75  DENLLYEVFKHADAKTLAVASCVSKRWHRTAQDERLWELICTRHWSNSINYGTRQL--RS 134
           DENLLYEVFKH DAKTLA+ASCVSK+WHRT  DERLWE+ICTRHWSNS N  T+QL  RS
Sbjct: 61  DENLLYEVFKHTDAKTLAIASCVSKQWHRTGNDERLWEMICTRHWSNSSNCSTQQLRTRS 120

Query: 135 VVLALGGFRRLHALYLSKTVPSMPGSPILPPSSSIQARVVKGGNKRWGKDEVNLSLSLLS 194
           VVLALGGFRRL+ALYLSKT P+ P          +QARVVKGG K WGKDEVNLSL LLS
Sbjct: 121 VVLALGGFRRLYALYLSKTAPTAP---------PMQARVVKGGGKSWGKDEVNLSLCLLS 179

Query: 195 IRYYEKMNLANKR 203
           I Y+EKMNLANKR
Sbjct: 181 IGYFEKMNLANKR 179

[Close]

BLAST of Spo20152.1 vs. NCBI nr
Match: gi|702383882|ref|XP_010064165.1| (PREDICTED: F-box protein GID2 [Eucalyptus grandis])

HSP 1 Score: 172.2 bits (435), Expect = 9.500e-40
Identity = 90/135 (66.67%), Postives = 102/135 (75.56%), Query Frame = 1

		  
Query: 68  FAKLDENLLYEVFKHADAKTLAVASCVSKRWHRTAQDERLWELICTRHWSNSINYGTRQL 127
           FA LDE+LL+EV KHADA+TLA+A+CVSK WHRTAQDERLWELICTRHW N I  G +QL
Sbjct: 88  FAHLDEDLLFEVLKHADARTLAMAACVSKLWHRTAQDERLWELICTRHWPN-IGCGNQQL 147

Query: 128 RSVVLALGGFRRLHALYLSKTVPSMPGS-----PILPPSSSIQARVVKGGNKRWGKDEVN 187
           RSVVLALGGF+RLH+LYL  +    PGS     P LPP   ++ +       RWGKDEVN
Sbjct: 148 RSVVLALGGFKRLHSLYLPLSKQQQPGSASAWAPPLPPMMGVKPQT------RWGKDEVN 207

Query: 188 LSLSLLSIRYYEKMN 198
           L LSLLSIR YEKMN
Sbjct: 208 LFLSLLSIRCYEKMN 215

[Close]

BLAST of Spo20152.1 vs. NCBI nr
Match: gi|359492001|ref|XP_002285053.2| (PREDICTED: F-box protein GID2 [Vitis vinifera])

HSP 1 Score: 170.6 bits (431), Expect = 2.800e-39
Identity = 95/169 (56.21%), Postives = 109/169 (64.50%), Query Frame = 1

		  
Query: 47  DQTIPNNNHDQQFHDSDCDSE---FAKLDENLLYEVFKHADAKTLAVASCVSKRWHRTAQ 106
           DQ + N   +    D +   E   F  LDENLLYEV KH DA+TLA+A CVSK WHRT+Q
Sbjct: 15  DQKMKNPKLEDDEEDGEVRGETTGFVNLDENLLYEVLKHVDARTLAIAGCVSKLWHRTSQ 74

Query: 107 DERLWELICTRHWSNSINYGTRQLRSVVLALGGFRRLHALYLSKTVPSMPGSPILPPSSS 166
           DERLWELICTRHW+N I  G +Q+RSVVLALGGFRRLH+LYL         S   PPSSS
Sbjct: 75  DERLWELICTRHWAN-IGCGNQQVRSVVLALGGFRRLHSLYLWPLSKPQASSSSSPPSSS 134

Query: 167 IQARVVKGG-----------NKRWGKDEVNLSLSLLSIRYYEKMNLANK 202
             +  +                RWGKDEV+LSLSLLSIRYYEKMN  N+
Sbjct: 135 WPSTALSPPFAPHSMMRPKFPTRWGKDEVHLSLSLLSIRYYEKMNFNNR 182

[Close]

BLAST of Spo20152.1 vs. NCBI nr
Match: gi|309256353|gb|ADO61004.1| (sleepy 1 [Helianthus annuus])

HSP 1 Score: 168.7 bits (426), Expect = 1.000e-38
Identity = 90/147 (61.22%), Postives = 100/147 (68.03%), Query Frame = 1

		  
Query: 71  LDENLLYEVFKHADAKTLAVASCVSKRWHRTAQDERLWELICTRHWSNSINYGTRQLRSV 130
           LDENLLYEV KH DA+TL  A CVSK+WHRTAQDERLWELICT+HW+N I  G  QLRSV
Sbjct: 32  LDENLLYEVLKHVDARTLGAAGCVSKQWHRTAQDERLWELICTKHWAN-IGCGNTQLRSV 91

Query: 131 VLALGGFRRLHALYL---------------SKTVPSMPGSPILPPSSSIQARVVKGGNKR 190
           VLALGGFRRLH+ YL               S TV +    P LPP  +I          R
Sbjct: 92  VLALGGFRRLHSHYLWPLSKPSSSAATSSSSSTVATTSSWPCLPPPRAI-VPAKPTAKAR 151

Query: 191 WGKDEVNLSLSLLSIRYYEKMNLANKR 203
           WGKDEV LSLSLLSIRYYEKMN +N++
Sbjct: 152 WGKDEVQLSLSLLSIRYYEKMNFSNRK 176

[Close]

BLAST of Spo20152.1 vs. UniProtKB/TrEMBL
Match: A0A0K9Q7P7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_216090 PE=4 SV=1)

HSP 1 Score: 381.3 bits (978), Expect = 7.200e-103
Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 1

		  
Query: 15  MKRAMNSQPESESESTINPAINTKKPKFASNPDQTIPNNNHDQQFHDSDCDSEFAKLDEN 74
           MKRAMNSQPESESESTINPAINTKKPKFASNPDQTIPNNNHDQQFHDSDCDSEFAKLDEN
Sbjct: 1   MKRAMNSQPESESESTINPAINTKKPKFASNPDQTIPNNNHDQQFHDSDCDSEFAKLDEN 60

Query: 75  LLYEVFKHADAKTLAVASCVSKRWHRTAQDERLWELICTRHWSNSINYGTRQLRSVVLAL 134
           LLYEVFKHADAKTLAVASCVSKRWHRTAQDERLWELICTRHWSNSINYGTRQLRSVVLAL
Sbjct: 61  LLYEVFKHADAKTLAVASCVSKRWHRTAQDERLWELICTRHWSNSINYGTRQLRSVVLAL 120

Query: 135 GGFRRLHALYLSKTVPSMPGSPILPPSSSIQARVVKGGNKRWGKDEVNLSLSLLSIRYYE 194
           GGFRRLHALYLSKTVPSMPGSPILPPSSSIQARVVKGGNKRWGKDEVNLSLSLLSIRYYE
Sbjct: 121 GGFRRLHALYLSKTVPSMPGSPILPPSSSIQARVVKGGNKRWGKDEVNLSLSLLSIRYYE 180

Query: 195 KMNLANKRP 204
           KMNLANKRP
Sbjct: 181 KMNLANKRP 189

[Close]

BLAST of Spo20152.1 vs. UniProtKB/TrEMBL
Match: A0A0J8DV96_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_015500 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 1.500e-55
Identity = 126/193 (65.28%), Postives = 138/193 (71.50%), Query Frame = 1

		  
Query: 15  MKRAMNSQPESESESTINPAINTKKPKFASNPDQTIPNNNHDQQFH---DSDCDSEFAKL 74
           MKR+M SQP+           N+KK KF   PDQ     +         D DCDSEFAKL
Sbjct: 1   MKRSMASQPDLPHTPK-----NSKKLKFKQIPDQIDAKTDEHIMISPQIDFDCDSEFAKL 60

Query: 75  DENLLYEVFKHADAKTLAVASCVSKRWHRTAQDERLWELICTRHWSNSINYGTRQL--RS 134
           DENLLYEVFKH DAKTLA+ASCVSK+WHRT  DERLWE+ICTRHWSNS N  T+QL  RS
Sbjct: 61  DENLLYEVFKHTDAKTLAIASCVSKQWHRTGNDERLWEMICTRHWSNSSNCSTQQLRTRS 120

Query: 135 VVLALGGFRRLHALYLSKTVPSMPGSPILPPSSSIQARVVKGGNKRWGKDEVNLSLSLLS 194
           VVLALGGFRRL+ALYLSKT P+ P          +QARVVKGG K WGKDEVNLSL LLS
Sbjct: 121 VVLALGGFRRLYALYLSKTAPTAP---------PMQARVVKGGGKSWGKDEVNLSLCLLS 179

Query: 195 IRYYEKMNLANKR 203
           I Y+EKMNLANKR
Sbjct: 181 IGYFEKMNLANKR 179

[Close]

BLAST of Spo20152.1 vs. UniProtKB/TrEMBL
Match: F6GZW7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g09700 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 1.900e-39
Identity = 95/169 (56.21%), Postives = 109/169 (64.50%), Query Frame = 1

		  
Query: 47  DQTIPNNNHDQQFHDSDCDSE---FAKLDENLLYEVFKHADAKTLAVASCVSKRWHRTAQ 106
           DQ + N   +    D +   E   F  LDENLLYEV KH DA+TLA+A CVSK WHRT+Q
Sbjct: 15  DQKMKNPKLEDDEEDGEVRGETTGFVNLDENLLYEVLKHVDARTLAIAGCVSKLWHRTSQ 74

Query: 107 DERLWELICTRHWSNSINYGTRQLRSVVLALGGFRRLHALYLSKTVPSMPGSPILPPSSS 166
           DERLWELICTRHW+N I  G +Q+RSVVLALGGFRRLH+LYL         S   PPSSS
Sbjct: 75  DERLWELICTRHWAN-IGCGNQQVRSVVLALGGFRRLHSLYLWPLSKPQASSSSSPPSSS 134

Query: 167 IQARVVKGG-----------NKRWGKDEVNLSLSLLSIRYYEKMNLANK 202
             +  +                RWGKDEV+LSLSLLSIRYYEKMN  N+
Sbjct: 135 WPSTALSPPFAPHSMMRPKFPTRWGKDEVHLSLSLLSIRYYEKMNFNNR 182

[Close]

BLAST of Spo20152.1 vs. UniProtKB/TrEMBL
Match: E3TPZ6_HELAN (Sleepy 1 OS=Helianthus annuus PE=2 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 7.300e-39
Identity = 90/147 (61.22%), Postives = 100/147 (68.03%), Query Frame = 1

		  
Query: 71  LDENLLYEVFKHADAKTLAVASCVSKRWHRTAQDERLWELICTRHWSNSINYGTRQLRSV 130
           LDENLLYEV KH DA+TL  A CVSK+WHRTAQDERLWELICT+HW+N I  G  QLRSV
Sbjct: 32  LDENLLYEVLKHVDARTLGAAGCVSKQWHRTAQDERLWELICTKHWAN-IGCGNTQLRSV 91

Query: 131 VLALGGFRRLHALYL---------------SKTVPSMPGSPILPPSSSIQARVVKGGNKR 190
           VLALGGFRRLH+ YL               S TV +    P LPP  +I          R
Sbjct: 92  VLALGGFRRLHSHYLWPLSKPSSSAATSSSSSTVATTSSWPCLPPPRAI-VPAKPTAKAR 151

Query: 191 WGKDEVNLSLSLLSIRYYEKMNLANKR 203
           WGKDEV LSLSLLSIRYYEKMN +N++
Sbjct: 152 WGKDEVQLSLSLLSIRYYEKMNFSNRK 176

[Close]

BLAST of Spo20152.1 vs. UniProtKB/TrEMBL
Match: E3TPZ5_HELAN (Sleepy 1 OS=Helianthus annuus PE=2 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 7.300e-39
Identity = 90/147 (61.22%), Postives = 100/147 (68.03%), Query Frame = 1

		  
Query: 71  LDENLLYEVFKHADAKTLAVASCVSKRWHRTAQDERLWELICTRHWSNSINYGTRQLRSV 130
           LDENLLYEV KH DA+TL  A CVSK+WHRTAQDERLWELICT+HW+N I  G  QLRSV
Sbjct: 32  LDENLLYEVLKHVDARTLGAAGCVSKQWHRTAQDERLWELICTKHWAN-IGCGNTQLRSV 91

Query: 131 VLALGGFRRLHALYL---------------SKTVPSMPGSPILPPSSSIQARVVKGGNKR 190
           VLALGGFRRLH+ YL               S TV +    P LPP  +I          R
Sbjct: 92  VLALGGFRRLHSHYLWPLSKPSSSAATSSSSSTVATTSSWPCLPPPRAI-VPAKPTAKAR 151

Query: 191 WGKDEVNLSLSLLSIRYYEKMNLANKR 203
           WGKDEV LSLSLLSIRYYEKMN +N++
Sbjct: 152 WGKDEVQLSLSLLSIRYYEKMNFSNRK 176

[Close]

BLAST of Spo20152.1 vs. ExPASy Swiss-Prot
Match: GID2_ARATH (F-box protein GID2 OS=Arabidopsis thaliana GN=GID2 PE=1 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 2.600e-37
Identity = 85/136 (62.50%), Postives = 98/136 (72.06%), Query Frame = 1

		  
Query: 68  FAKLDENLLYEVFKHADAKTLAVASCVSKRWHRTAQDERLWELICTRHWSNSINYGTRQL 127
           F+ LDENL+YEV KH DAKTLA++SCVSK WH+TAQDERLWELICTRHW+N I  G  QL
Sbjct: 32  FSNLDENLVYEVLKHVDAKTLAMSSCVSKIWHKTAQDERLWELICTRHWTN-IGCGQNQL 91

Query: 128 RSVVLALGGFRRLHALYLSKTVPSMPGSPILPPSSSIQARVVKGGNKRWGKDEVNLSLSL 187
           RSVVLALGGFRRLH+LYL          P+  P+             R+GKDE+ L+LSL
Sbjct: 92  RSVVLALGGFRRLHSLYL---------WPLSKPNP----------RARFGKDELKLTLSL 146

Query: 188 LSIRYYEKMNLANKRP 204
           LSIRYYEKM+   KRP
Sbjct: 152 LSIRYYEKMSF-TKRP 146

[Close]

BLAST of Spo20152.1 vs. ExPASy Swiss-Prot
Match: GID2_ORYSJ (F-box protein GID2 OS=Oryza sativa subsp. japonica GN=GID2 PE=1 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 6.200e-23
Identity = 65/162 (40.12%), Postives = 95/162 (58.64%), Query Frame = 1

		  
Query: 43  ASNPDQTIPNNNHDQQFHDSDCDSEFAK---LDENLLYEVFKHADAKTLAVASCVSKRWH 102
           AS+  Q  P    ++Q  +   + E  +   L E+L++EV + A+A+TLA A+CVS+ W 
Sbjct: 45  ASSSSQPPPQQQQEEQPPEDAGEGEQPRVPDLGEDLVFEVLRRAEARTLAAAACVSRGWR 104

Query: 103 RTAQDERLWELICTRHWSNSINYGTRQLRSVVLALGGFRRLHALYLSKTVPSMPGSPILP 162
           + A+DERLWE  C R W+N + +  RQLR+VVL+LGGFRRLHA+Y+        G+ +  
Sbjct: 105 QLAEDERLWEAACVREWAN-LGFSERQLRAVVLSLGGFRRLHAVYIRPL--QWRGAGVPR 164

Query: 163 PSSSIQARVVKGGNKRWGKDEVNLSLSLLSIRYYEKMNLANK 202
                Q  V      R G+D+V LSLSL SI +++ M    K
Sbjct: 165 QQGRRQPPV------RLGRDQVQLSLSLFSIGFFQNMPCPKK 197

[Close]

BLAST of Spo20152.1 vs. ExPASy Swiss-Prot
Match: SNE_ARATH (F-box protein SNE OS=Arabidopsis thaliana GN=SNE PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.300e-9
Identity = 37/123 (30.08%), Postives = 61/123 (49.59%), Query Frame = 1

		  
Query: 74  NLLYEVFKHADAKTLAVASCVSKRWHRTAQDERLWELICTRHWSNSINYGTRQLRSVVLA 133
           ++L E+ +  D  +L  A+CV + W   A+++ +WE +C R  S      +  LRSVV A
Sbjct: 33  DVLVEILRRLDGSSLCSAACVCRLWSAVARNDSIWEELCFRQVSPR---PSLSLRSVVSA 92

Query: 134 LGGFRRLHALYLSKTVPSMPGSPILPPSSSIQARVVKGGNKRWGKDEVNLSLSLLSIRYY 193
           LGG+R L+ L +   +  +P                      W +D++ LSLSL  + YY
Sbjct: 93  LGGYRCLYFLCIRPVLARLP-------------------KLLWTRDQLQLSLSLYCVHYY 133

Query: 194 EKM 197
           E++
Sbjct: 153 ERL 133

[Close]

BLAST of Spo20152.1 vs. TAIR (Arabidopsis)
Match: AT4G24210.1 (F-box family protein)

HSP 1 Score: 156.8 bits (395), Expect = 1.500e-38
Identity = 85/136 (62.50%), Postives = 98/136 (72.06%), Query Frame = 1

		  
Query: 68  FAKLDENLLYEVFKHADAKTLAVASCVSKRWHRTAQDERLWELICTRHWSNSINYGTRQL 127
           F+ LDENL+YEV KH DAKTLA++SCVSK WH+TAQDERLWELICTRHW+N I  G  QL
Sbjct: 32  FSNLDENLVYEVLKHVDAKTLAMSSCVSKIWHKTAQDERLWELICTRHWTN-IGCGQNQL 91

Query: 128 RSVVLALGGFRRLHALYLSKTVPSMPGSPILPPSSSIQARVVKGGNKRWGKDEVNLSLSL 187
           RSVVLALGGFRRLH+LYL          P+  P+             R+GKDE+ L+LSL
Sbjct: 92  RSVVLALGGFRRLHSLYL---------WPLSKPNP----------RARFGKDELKLTLSL 146

Query: 188 LSIRYYEKMNLANKRP 204
           LSIRYYEKM+   KRP
Sbjct: 152 LSIRYYEKMSF-TKRP 146

[Close]

BLAST of Spo20152.1 vs. TAIR (Arabidopsis)
Match: AT5G48170.1 (F-box family protein)

HSP 1 Score: 64.7 bits (156), Expect = 7.500e-11
Identity = 37/123 (30.08%), Postives = 61/123 (49.59%), Query Frame = 1

		  
Query: 74  NLLYEVFKHADAKTLAVASCVSKRWHRTAQDERLWELICTRHWSNSINYGTRQLRSVVLA 133
           ++L E+ +  D  +L  A+CV + W   A+++ +WE +C R  S      +  LRSVV A
Sbjct: 33  DVLVEILRRLDGSSLCSAACVCRLWSAVARNDSIWEELCFRQVSPR---PSLSLRSVVSA 92

Query: 134 LGGFRRLHALYLSKTVPSMPGSPILPPSSSIQARVVKGGNKRWGKDEVNLSLSLLSIRYY 193
           LGG+R L+ L +   +  +P                      W +D++ LSLSL  + YY
Sbjct: 93  LGGYRCLYFLCIRPVLARLP-------------------KLLWTRDQLQLSLSLYCVHYY 133

Query: 194 EKM 197
           E++
Sbjct: 153 ERL 133

The following BLAST results are available for this feature:

BLAST of Spo20152.1 vs. NCBI nr
BLAST of Spo20152.1 vs. UniProtKB/TrEMBL
BLAST of Spo20152.1 vs. ExPASy Swiss-Prot
BLAST of Spo20152.1 vs. TAIR (Arabidopsis)

BLAST of Spo20152.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

Zoom :

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Match Name	E-value	Identity	Description
gi\|902038256\|gb\|KNA02713.1\|	1.0e-102	100.	hypothetical protein SOVF_2160...	[more]
gi\|731378781\|ref\|XP_010668269.1\|	2.1e-55	65.2	PREDICTED: F-box protein GID2-...	[more]
gi\|702383882\|ref\|XP_010064165.1\|	9.5e-40	66.6	PREDICTED: F-box protein GID2 ...	[more]
gi\|359492001\|ref\|XP_002285053.2\|	2.8e-39	56.2	PREDICTED: F-box protein GID2 ...	[more]
gi\|309256353\|gb\|ADO61004.1\|	1.0e-38	61.2	sleepy 1 [Helianthus annuus]	[more]

BLAST of Spo20152.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
A0A0K9Q7P7_SPIOL	7.2e-103	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8DV96_BETVU	1.5e-55	65.2	Uncharacterized protein OS=Bet...	[more]
F6GZW7_VITVI	1.9e-39	56.2	Putative uncharacterized prote...	[more]
E3TPZ6_HELAN	7.3e-39	61.2	Sleepy 1 OS=Helianthus annuus ...	[more]
E3TPZ5_HELAN	7.3e-39	61.2	Sleepy 1 OS=Helianthus annuus ...	[more]

BLAST of Spo20152.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 3

Position :

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Match Name	E-value	Identity	Description
GID2_ARATH	2.6e-37	62.5	F-box protein GID2 OS=Arabidop...	[more]
GID2_ORYSJ	6.2e-23	40.1	F-box protein GID2 OS=Oryza sa...	[more]
SNE_ARATH	1.3e-9	30.0	F-box protein SNE OS=Arabidops...	[more]

BLAST of Spo20152.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2

Position :

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Match Name	E-value	Identity	Description
AT4G24210.1	1.5e-38	62.5	F-box family protein	[more]
AT5G48170.1	7.5e-11	30.0	F-box family protein	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	PFAM	PF12937	F-box-like	coord: 75..114 score: 4.
IPR001810	F-box domain	SMART	SM00256	fbox_2	coord: 71..111 score: 3.
IPR001810	F-box domain	PROFILE	PS50181	FBOX	coord: 65..111 score: 9
IPR001810	F-box domain	unknown	SSF81383	F-box domain	coord: 61..126 score: 1.28
None	No IPR available	GENE3D	1.20.1280.50		coord: 70..122 score: 1.7
None	No IPR available	PANTHER	PTHR12874	FAMILY NOT NAMED	coord: 69..145 score: 6.4
None	No IPR available	PANTHER	PTHR12874:SF10	SUBFAMILY NOT NAMED	coord: 69..145 score: 6.4

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048444	floral organ morphogenesis
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0016311	dephosphorylation
biological_process	GO:0016036	cellular response to phosphate starvation
biological_process	GO:0006636	unsaturated fatty acid biosynthetic process
biological_process	GO:0006364	rRNA processing
biological_process	GO:0006771	riboflavin metabolic process
biological_process	GO:0010114	response to red light
biological_process	GO:0010218	response to far red light
biological_process	GO:0009637	response to blue light
biological_process	GO:0035304	regulation of protein dephosphorylation
biological_process	GO:0009657	plastid organization
biological_process	GO:0010206	photosystem II repair
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0009773	photosynthetic electron transport in photosystem I
biological_process	GO:0019497	hexachlorocyclohexane metabolic process
biological_process	GO:0046487	glyoxylate metabolic process
biological_process	GO:0019761	glucosinolate biosynthetic process
biological_process	GO:0019344	cysteine biosynthetic process
biological_process	GO:0015995	chlorophyll biosynthetic process
biological_process	GO:0016117	carotenoid biosynthetic process
biological_process	GO:0006979	response to oxidative stress
biological_process	GO:0030091	protein repair
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0006464	cellular protein modification process
biological_process	GO:0042538	hyperosmotic salinity response
biological_process	GO:0010027	thylakoid membrane organization
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0010264	myo-inositol hexakisphosphate biosynthetic process
biological_process	GO:0010286	heat acclimation
biological_process	GO:0019375	galactolipid biosynthetic process
biological_process	GO:0045892	negative regulation of transcription, DNA-templated
biological_process	GO:0048193	Golgi vesicle transport
biological_process	GO:0009052	pentose-phosphate shunt, non-oxidative branch
biological_process	GO:0006766	vitamin metabolic process
biological_process	GO:0006569	tryptophan catabolic process
biological_process	GO:0009862	systemic acquired resistance, salicylic acid mediated signaling pathway
biological_process	GO:0019748	secondary metabolic process
biological_process	GO:0009697	salicylic acid biosynthetic process
biological_process	GO:0009409	response to cold
biological_process	GO:0010200	response to chitin
biological_process	GO:0010363	regulation of plant-type hypersensitive response
biological_process	GO:0043900	regulation of multi-organism process
biological_process	GO:0010310	regulation of hydrogen peroxide metabolic process
biological_process	GO:0019253	reductive pentose-phosphate cycle
biological_process	GO:0006612	protein targeting to membrane
biological_process	GO:0019684	photosynthesis, light reaction
biological_process	GO:0031348	negative regulation of defense response
biological_process	GO:0016310	phosphorylation
biological_process	GO:0000165	MAPK cascade
biological_process	GO:0009106	lipoate metabolic process
biological_process	GO:0009695	jasmonic acid biosynthetic process
biological_process	GO:0009684	indoleacetic acid biosynthetic process
biological_process	GO:0006546	glycine catabolic process
biological_process	GO:0009595	detection of biotic stimulus
biological_process	GO:0050832	defense response to fungus
biological_process	GO:0009108	coenzyme biosynthetic process
biological_process	GO:0015976	carbon utilization
biological_process	GO:0006446	regulation of translational initiation
biological_process	GO:0016114	terpenoid biosynthetic process
biological_process	GO:0042432	indole biosynthetic process
biological_process	GO:0006508	proteolysis
biological_process	GO:0009231	riboflavin biosynthetic process
biological_process	GO:0006635	fatty acid beta-oxidation
biological_process	GO:0045454	cell redox homeostasis
biological_process	GO:0010227	floral organ abscission
biological_process	GO:0010162	seed dormancy process
biological_process	GO:0009723	response to ethylene
biological_process	GO:0006164	purine nucleotide biosynthetic process
biological_process	GO:0006560	proline metabolic process
biological_process	GO:0048481	plant ovule development
biological_process	GO:0009814	defense response, incompatible interaction
biological_process	GO:0006526	arginine biosynthetic process
biological_process	GO:0015979	photosynthesis
biological_process	GO:0009863	salicylic acid mediated signaling pathway
biological_process	GO:0050896	response to stimulus
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0009845	seed germination
biological_process	GO:0009069	serine family amino acid metabolic process
biological_process	GO:0006479	protein methylation
biological_process	GO:0046500	S-adenosylmethionine metabolic process
biological_process	GO:2000037	regulation of stomatal complex patterning
biological_process	GO:0006468	protein phosphorylation
biological_process	GO:0015824	proline transport
biological_process	GO:0009626	plant-type hypersensitive response
biological_process	GO:0010229	inflorescence development
biological_process	GO:0009737	response to abscisic acid
biological_process	GO:0006591	ornithine metabolic process
biological_process	GO:0006412	translation
biological_process	GO:0009555	pollen development
biological_process	GO:0009744	response to sucrose
biological_process	GO:0009749	response to glucose
biological_process	GO:0009750	response to fructose
biological_process	GO:0009867	jasmonic acid mediated signaling pathway
biological_process	GO:0006007	glucose catabolic process
biological_process	GO:0030244	cellulose biosynthetic process
biological_process	GO:0009755	hormone-mediated signaling pathway
biological_process	GO:0042744	hydrogen peroxide catabolic process
biological_process	GO:0009939	positive regulation of gibberellic acid mediated signaling pathway
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0010325	raffinose family oligosaccharide biosynthetic process
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0005777	peroxisome
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0009505	plant-type cell wall
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005840	ribosome
cellular_component	GO:0009348	ornithine carbamoyltransferase complex
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0019005	SCF ubiquitin ligase complex
cellular_component	GO:0005634	nucleus
cellular_component	GO:0009534	chloroplast thylakoid
cellular_component	GO:0044464	cell part
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0044425	membrane part
cellular_component	GO:0031977	thylakoid lumen
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009506	plasmodesma
molecular_function	GO:0005515	protein binding
molecular_function	GO:0004719	protein-L-isoaspartate (D-aspartate) O-methyltransferase activity
molecular_function	GO:0031072	heat shock protein binding
molecular_function	GO:0005198	structural molecule activity
molecular_function	GO:0051082	unfolded protein binding
molecular_function	GO:0016866	intramolecular transferase activity
molecular_function	GO:0016853	isomerase activity
molecular_function	GO:0008430	selenium binding
molecular_function	GO:0008113	peptide-methionine (S)-S-oxide reductase activity
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0004585	ornithine carbamoyltransferase activity
molecular_function	GO:0016597	amino acid binding
molecular_function	GO:0003993	acid phosphatase activity
molecular_function	GO:0016746	transferase activity, transferring acyl groups
molecular_function	GO:0004674	protein serine/threonine kinase activity
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003919	FMN adenylyltransferase activity
molecular_function	GO:0008967	phosphoglycolate phosphatase activity
molecular_function	GO:0008531	riboflavin kinase activity
molecular_function	GO:0004252	serine-type endopeptidase activity
molecular_function	GO:0010181	FMN binding
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0016844	strictosidine synthase activity
molecular_function	GO:0004751	ribose-5-phosphate isomerase activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo28058	0.82	Barchart \| Table
Spo23907	0.78	Barchart \| Table
Spo11961	0.78	Barchart \| Table
Spo13393	0.76	Barchart \| Table
Spo14678	0.76	Barchart \| Table
Spo20869	0.76	Barchart \| Table
Spo02573	0.75	Barchart \| Table
Spo05073	0.75	Barchart \| Table
Spo15372	0.74	Barchart \| Table
Spo02932	0.74	Barchart \| Table
Spo06004	0.74	Barchart \| Table
Spo10864	0.74	Barchart \| Table
Spo18400	0.74	Barchart \| Table
Spo00498	0.73	Barchart \| Table
Spo27081	0.73	Barchart \| Table
Spo14225	0.72	Barchart \| Table
Spo04653	0.72	Barchart \| Table
Spo26117	0.72	Barchart \| Table
Spo07476	0.72	Barchart \| Table
Spo05135	0.72	Barchart \| Table
Spo09290	0.72	Barchart \| Table
Spo25159	0.72	Barchart \| Table
Spo13691	0.72	Barchart \| Table
Spo12370	0.72	Barchart \| Table
Spo21660	0.71	Barchart \| Table
Spo18195	0.71	Barchart \| Table
Spo09554	0.71	Barchart \| Table
Spo13029	0.71	Barchart \| Table
Spo28324	0.71	Barchart \| Table
Spo20849	0.70	Barchart \| Table
Spo06293	0.70	Barchart \| Table
Spo08654	0.70	Barchart \| Table
Spo08935	0.70	Barchart \| Table
Spo13193	0.70	Barchart \| Table
Spo17612	0.69	Barchart \| Table
Spo00667	0.69	Barchart \| Table
Spo05431	0.69	Barchart \| Table
Spo17578	0.68	Barchart \| Table
Spo00872	0.68	Barchart \| Table
Spo09202	0.68	Barchart \| Table
Spo09769	0.68	Barchart \| Table
Spo20521	0.68	Barchart \| Table
Spo20544	0.68	Barchart \| Table
Spo21155	0.68	Barchart \| Table
Spo22811	0.68	Barchart \| Table
Spo24046	0.68	Barchart \| Table
Spo28186	0.68	Barchart \| Table
Spo24857	0.67	Barchart \| Table
Spo10235	0.67	Barchart \| Table
Spo14944	0.67	Barchart \| Table
Spo08789	0.67	Barchart \| Table
Spo24425	0.67	Barchart \| Table
Spo04536	0.66	Barchart \| Table
Spo20946	0.66	Barchart \| Table
Spo21215	0.66	Barchart \| Table
Spo03757	0.66	Barchart \| Table
Spo01426	0.66	Barchart \| Table
Spo16213	0.66	Barchart \| Table
Spo15639	0.66	Barchart \| Table
Spo18828	0.66	Barchart \| Table
Spo26858	0.66	Barchart \| Table
Spo07236	0.66	Barchart \| Table
Spo17161	0.66	Barchart \| Table
Spo04383	0.65	Barchart \| Table
Spo24716	0.65	Barchart \| Table
Spo14342	0.65	Barchart \| Table
Spo17250	0.65	Barchart \| Table