Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.GACGTATAAGTTACACATGTTAGTTGTTTGTTTGTTTCTACAAAACTCAATATTTGTTTGTATCTCCCTTGAACAAGCAGCTTATCATGCCCGTTGACAAAGACTAAAAGTCTACAAAGTCAAGTGGACCAGATCGATCAATTCCTATGCTTTACCTCCCTTCCCTTGTAATCAAAGTCCAAAACAAGTCCCTCTTAACAGAAAATGGAATTCTTGCACAGAGCAAAAGTGTTTCGGCTAAAACGCAGTGGGCAAAGCAAGTACCTGATAGCTCACAAAGACGAGGAAACCATCAAGCAAAGTCGCGATAAATCTTCAAACAATTCCCGTTGGACCTACGAGCTTGTTGAGGGGAAGCCCAAACTCATCCGACTCAGAAGCTGTTGCAGCTGGAGGTACTTAGCCACCACTGAAGATCCATTTCTGTTAGGAATGACAGGAAAGAAGATTGTACAGACAATTAGCAAGGGTCCTATAGTAGAGTGGGAGCCTATTAAAGAAGGGTCTTACATCAAACTTCAGAGTCATGCAGGTAGTTTCTTAAGGGCTAACCAAGGACCTCCCCCTTGGAGAAATTCTGTCACCCATGATGAGCCAGGTCATTGGACAGCCACTGAAAACATGACACTGTGGATAGTTGATATAGTCGAGATCGATTATCAGTCCTCCAGGATGGGCAACGGTCATTCTACATCAACAGAGGAGGTCAATGTTGCTTCATCATCCTGCAATGTAGCCAATCAGGAAGTTTTATGTCCAGCTGCTAGGCCTCCTATATATGTAAGTTCCTCTATACAGGTACTTCCCAATAGAGCATAATATTGAAGCCGATTACATAATGACCAAACATGATTAGATTATAGAGTCACATTCATAAAAACAAATTATGTGTTAGTTTTAGACGGATCATCAATTTGAAGATTAAATTTACAGGGCTGTGTTCTTAATTGAAGACTATTAACACTGTTACATCTTTTGGGGTTATGATCTTAATCTCAGCATTTTGCTAATCTCAAAGCAACAAATGTTAACAAGTCAGATATTGTGTCAGTCCAATCTACATCAGGATGTGTGCAACCACTCCAAGTTAAGAGGTTTAAGCATACCTTTGACCAAATGAAGAGCTTAGAATTTCGTACCTTATTGTCCTTGGGACAGGACAAGAAGCTAGAGAATGTAGTTACTGTGCTAATTGCTGATGCAAAATCCATAGGCCAAGGTAAATTCACTAGTAAACTTGTCAACATTCAAGAGCAGCTCAAGTCTATGAAGAATTACCATGAATCAGCCTCTCAAGTTTTAATAGAGTATTCAACATTCTCTACAAGAAGATTAAAGATCAGGGATGAGCTTAAAAAGGACGCTGTTAAGGCTCGTGAGGTAGAGAAAGTTGAGGTCAAAGTTAACAACACAATTGCAGATGTAAGAGCCAAAAGAGAACAACTGATGAAGCAACTAGAGGACACTGAAAATGCCATCAAGGATGTTAAGAAAGCTCAGGCTGATATTGTGCTGGAAGTTGACAAGCTTATATCGAGAATAGAGCAGAAGGGCGAGGGGTTAAAAGATATGGAAAGCAAGGAGAGATCATGGCGAGCGAGGAAAATTGAGGCAGAAAGATTGGTGGACAGAGTTGAGAAAGACTGGGGAAAGGTTAAAACCACATTTTCAGAATTAACCGTTAACAAGTAA GACGTATAAGTTACACATGTTAGTTGTTTGTTTGTTTCTACAAAACTCAATATTTGTTTGTATCTCCCTTGAACAAGCAGCTTATCATGCCCGTTGACAAAGACTAAAAGTCTACAAAGTCAAGTGGACCAGATCGATCAATTCCTATGCTTTACCTCCCTTCCCTTGTAATCAAAGTCCAAAACAAGTCCCTCTTAACAGAAAATGGAATTCTTGCACAGAGCAAAAGTGTTTCGGCTAAAACGCAGTGGGCAAAGCAAGTACCTGATAGCTCACAAAGACGAGGAAACCATCAAGCAAAGTCGCGATAAATCTTCAAACAATTCCCGTTGGACCTACGAGCTTGTTGAGGGGAAGCCCAAACTCATCCGACTCAGAAGCTGTTGCAGCTGGAGGTACTTAGCCACCACTGAAGATCCATTTCTGTTAGGAATGACAGGAAAGAAGATTGTACAGACAATTAGCAAGGGTCCTATAGTAGAGTGGGAGCCTATTAAAGAAGGGTCTTACATCAAACTTCAGAGTCATGCAGGTAGTTTCTTAAGGGCTAACCAAGGACCTCCCCCTTGGAGAAATTCTGTCACCCATGATGAGCCAGGTCATTGGACAGCCACTGAAAACATGACACTGTGGATAGTTGATATAGTCGAGATCGATTATCAGTCCTCCAGGATGGGCAACGGTCATTCTACATCAACAGAGGAGGTCAATGTTGCTTCATCATCCTGCAATGTAGCCAATCAGGAAGTTTTATGTCCAGCTGCTAGGCCTCCTATATATCATTTTGCTAATCTCAAAGCAACAAATGTTAACAAGTCAGATATTGTGTCAGTCCAATCTACATCAGGATGTGTGCAACCACTCCAAGTTAAGAGGTTTAAGCATACCTTTGACCAAATGAAGAGCTTAGAATTTCGTACCTTATTGTCCTTGGGACAGGACAAGAAGCTAGAGAATGTAGTTACTGTGCTAATTGCTGATGCAAAATCCATAGGCCAAGGTAAATTCACTAGTAAACTTGTCAACATTCAAGAGCAGCTCAAGTCTATGAAGAATTACCATGAATCAGCCTCTCAAGTTTTAATAGAGTATTCAACATTCTCTACAAGAAGATTAAAGATCAGGGATGAGCTTAAAAAGGACGCTGTTAAGGCTCGTGAGGTAGAGAAAGTTGAGGTCAAAGTTAACAACACAATTGCAGATGTAAGAGCCAAAAGAGAACAACTGATGAAGCAACTAGAGGACACTGAAAATGCCATCAAGGATGTTAAGAAAGCTCAGGCTGATATTGTGCTGGAAGTTGACAAGCTTATATCGAGAATAGAGCAGAAGGGCGAGGGGTTAAAAGATATGGAAAGCAAGGAGAGATCATGGCGAGCGAGGAAAATTGAGGCAGAAAGATTGGTGGACAGAGTTGAGAAAGACTGGGGAAAGGTTAAAACCACATTTTCAGAATTAACCGTTAACAAGTAA ATGGAATTCTTGCACAGAGCAAAAGTGTTTCGGCTAAAACGCAGTGGGCAAAGCAAGTACCTGATAGCTCACAAAGACGAGGAAACCATCAAGCAAAGTCGCGATAAATCTTCAAACAATTCCCGTTGGACCTACGAGCTTGTTGAGGGGAAGCCCAAACTCATCCGACTCAGAAGCTGTTGCAGCTGGAGGTACTTAGCCACCACTGAAGATCCATTTCTGTTAGGAATGACAGGAAAGAAGATTGTACAGACAATTAGCAAGGGTCCTATAGTAGAGTGGGAGCCTATTAAAGAAGGGTCTTACATCAAACTTCAGAGTCATGCAGGTAGTTTCTTAAGGGCTAACCAAGGACCTCCCCCTTGGAGAAATTCTGTCACCCATGATGAGCCAGGTCATTGGACAGCCACTGAAAACATGACACTGTGGATAGTTGATATAGTCGAGATCGATTATCAGTCCTCCAGGATGGGCAACGGTCATTCTACATCAACAGAGGAGGTCAATGTTGCTTCATCATCCTGCAATGTAGCCAATCAGGAAGTTTTATGTCCAGCTGCTAGGCCTCCTATATATCATTTTGCTAATCTCAAAGCAACAAATGTTAACAAGTCAGATATTGTGTCAGTCCAATCTACATCAGGATGTGTGCAACCACTCCAAGTTAAGAGGTTTAAGCATACCTTTGACCAAATGAAGAGCTTAGAATTTCGTACCTTATTGTCCTTGGGACAGGACAAGAAGCTAGAGAATGTAGTTACTGTGCTAATTGCTGATGCAAAATCCATAGGCCAAGGTAAATTCACTAGTAAACTTGTCAACATTCAAGAGCAGCTCAAGTCTATGAAGAATTACCATGAATCAGCCTCTCAAGTTTTAATAGAGTATTCAACATTCTCTACAAGAAGATTAAAGATCAGGGATGAGCTTAAAAAGGACGCTGTTAAGGCTCGTGAGGTAGAGAAAGTTGAGGTCAAAGTTAACAACACAATTGCAGATGTAAGAGCCAAAAGAGAACAACTGATGAAGCAACTAGAGGACACTGAAAATGCCATCAAGGATGTTAAGAAAGCTCAGGCTGATATTGTGCTGGAAGTTGACAAGCTTATATCGAGAATAGAGCAGAAGGGCGAGGGGTTAAAAGATATGGAAAGCAAGGAGAGATCATGGCGAGCGAGGAAAATTGAGGCAGAAAGATTGGTGGACAGAGTTGAGAAAGACTGGGGAAAGGTTAAAACCACATTTTCAGAATTAACCGTTAACAAGTAA MEFLHRAKVFRLKRSGQSKYLIAHKDEETIKQSRDKSSNNSRWTYELVEGKPKLIRLRSCCSWRYLATTEDPFLLGMTGKKIVQTISKGPIVEWEPIKEGSYIKLQSHAGSFLRANQGPPPWRNSVTHDEPGHWTATENMTLWIVDIVEIDYQSSRMGNGHSTSTEEVNVASSSCNVANQEVLCPAARPPIYHFANLKATNVNKSDIVSVQSTSGCVQPLQVKRFKHTFDQMKSLEFRTLLSLGQDKKLENVVTVLIADAKSIGQGKFTSKLVNIQEQLKSMKNYHESASQVLIEYSTFSTRRLKIRDELKKDAVKAREVEKVEVKVNNTIADVRAKREQLMKQLEDTENAIKDVKKAQADIVLEVDKLISRIEQKGEGLKDMESKERSWRARKIEAERLVDRVEKDWGKVKTTFSELTVNK Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo10909.1 vs. NCBI nr
Match: gi|902210492|gb|KNA16450.1| (hypothetical protein SOVF_088590 [Spinacia oleracea]) HSP 1 Score: 820.1 bits (2117), Expect = 1.800e-234 Identity = 421/421 (100.00%), Postives = 421/421 (100.00%), Query Frame = 1
BLAST of Spo10909.1 vs. NCBI nr
Match: gi|731376361|ref|XP_010667541.1| (PREDICTED: uncharacterized protein LOC104884564 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 506.5 bits (1303), Expect = 4.400e-140 Identity = 269/426 (63.15%), Postives = 332/426 (77.93%), Query Frame = 1
BLAST of Spo10909.1 vs. NCBI nr
Match: gi|870841683|gb|KMS95315.1| (hypothetical protein BVRB_009420 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 503.4 bits (1295), Expect = 3.700e-139 Identity = 268/420 (63.81%), Postives = 329/420 (78.33%), Query Frame = 1
BLAST of Spo10909.1 vs. NCBI nr
Match: gi|731319572|ref|XP_010670342.1| (PREDICTED: myosin-4-like isoform X2 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 383.6 bits (984), Expect = 4.300e-103 Identity = 212/420 (50.48%), Postives = 297/420 (70.71%), Query Frame = 1
BLAST of Spo10909.1 vs. NCBI nr
Match: gi|731319574|ref|XP_010670344.1| (PREDICTED: uncharacterized protein LOC104887419 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 354.4 bits (908), Expect = 2.800e-94 Identity = 203/447 (45.41%), Postives = 294/447 (65.77%), Query Frame = 1
BLAST of Spo10909.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RAD6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_088590 PE=4 SV=1) HSP 1 Score: 820.1 bits (2117), Expect = 1.300e-234 Identity = 421/421 (100.00%), Postives = 421/421 (100.00%), Query Frame = 1
BLAST of Spo10909.1 vs. UniProtKB/TrEMBL
Match: A0A0J8DWS7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_009420 PE=4 SV=1) HSP 1 Score: 503.4 bits (1295), Expect = 2.600e-139 Identity = 268/420 (63.81%), Postives = 329/420 (78.33%), Query Frame = 1
BLAST of Spo10909.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CZ12_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g040590 PE=4 SV=1) HSP 1 Score: 354.4 bits (908), Expect = 2.000e-94 Identity = 203/447 (45.41%), Postives = 294/447 (65.77%), Query Frame = 1
BLAST of Spo10909.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RAC1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_088600 PE=4 SV=1) HSP 1 Score: 330.9 bits (847), Expect = 2.300e-87 Identity = 196/437 (44.85%), Postives = 279/437 (63.84%), Query Frame = 1
BLAST of Spo10909.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CTS5_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g040570 PE=4 SV=1) HSP 1 Score: 228.8 bits (582), Expect = 1.200e-56 Identity = 114/185 (61.62%), Postives = 139/185 (75.14%), Query Frame = 1
BLAST of Spo10909.1 vs. TAIR (Arabidopsis)
Match: AT1G27100.1 (Actin cross-linking protein) HSP 1 Score: 146.4 bits (368), Expect = 4.100e-35 Identity = 77/152 (50.66%), Postives = 106/152 (69.74%), Query Frame = 1
BLAST of Spo10909.1 vs. TAIR (Arabidopsis)
Match: AT1G59710.1 (Protein of unknown function (DUF569)) HSP 1 Score: 141.7 bits (356), Expect = 1.000e-33 Identity = 72/152 (47.37%), Postives = 100/152 (65.79%), Query Frame = 1
BLAST of Spo10909.1 vs. TAIR (Arabidopsis)
Match: AT3G28630.1 (Protein of unknown function (DUF569)) HSP 1 Score: 141.0 bits (354), Expect = 1.700e-33 Identity = 72/151 (47.68%), Postives = 101/151 (66.89%), Query Frame = 1
BLAST of Spo10909.1 vs. TAIR (Arabidopsis)
Match: AT1G69900.1 (Actin cross-linking protein) HSP 1 Score: 133.3 bits (334), Expect = 3.600e-31 Identity = 86/230 (37.39%), Postives = 121/230 (52.61%), Query Frame = 1
BLAST of Spo10909.1 vs. TAIR (Arabidopsis)
Match: AT3G01311.1 (Protein of unknown function (DUF569)) HSP 1 Score: 132.9 bits (333), Expect = 4.700e-31 Identity = 71/168 (42.26%), Postives = 106/168 (63.10%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo10909.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo10909.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo10909.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 0
BLAST of Spo10909.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
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