Spo26110 (gene) | SpinachBase

Overview


Name	Spo26110
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	RING-box protein
Location	Super_scaffold_213 : 413928 .. 417294 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTAAGGACTGAGTAATGCCCTAATATAATATTACATTCAATCGGAATACGAAACGACAAAGAGGAGAGAGAGAGAGAGAGAAAGAGAAAGCGTCAATGGCAGCTACAGACGTGTCAACTTTTGTTCCCGCCGGCGAGGGTTCGAACGCTGCTGCTGGCCCATCTTCATCTTCCAAGAAACCGAAGCGTTTCGAAATCAAAAAGTGGAACGCCGTTTCTCTCTGGGCTTGGGGTAATCATTCTAATTAACCCCCAATTTTTGCTTCAAATATCTTCATAAACCCTAATTTTAATGTGTTGTTTCGGAGGATTTTCTACTGTTTTGTTGATTTTGGGGTCGGTTTTTGGCAGATATTGTGGTCGATAATTGCGCAATTTGTAGGAACCACATCATGGATCTCTGTGAGTTCTTTCTCAATTTTTTAGGGTAATTTTTTTGTAAGGTTTTTATGGTTGTTGTCGAGAATTGATTTGATTTGTTGATGTTGATTTTAAATAGGCATTGAGTGCCAAGCTAACCAGGCGAGTGCTACCAGTGAAGAGTGTACTGTTGCTTGGGGTATTATCTCTCTCCTATTTTTTTATTTTTATGAATTCCTCTTGGTTCCTGGTCCTTTTTTTCCCGCTAAAACTGAGCTTCAAACTAGATATCTTTAATCTAATTGAAGAAAGATTATGAGAATTTAGAATTTCGTTTGTTGCCAGATATGTTTTTATCGGCAGATAATTTTGAGTTTCCCATGTGTTTGATGGTGTGTGGTTTCGAATTGGCACTGTGTTTGTTGTCTATAGTAGACTGGTTTCTTGTTGTTAAGATGTAGAGAAATGTTCATTGGGGTTGATTGAATGTTTAGTAAGATGACATTTCCTAATATGTATACTACTTTAGATAACATTGTGATGTTGGAGGAATGAAAAGATGGATTATCCATGTATTAGCTCAGCTGGATGATTGGCAAGTTTGAGAGTTTGTTGGGTTTTTTTTTCTTACTAGAATTATTTTGACCTAGACAAATTAGGTGAATGAATGTAGCTTGGGAACTGCAACTCTGCTAGAGAGCTACACATCATAATTTGTGTGGCGAGCCTGTCAATAAAGCTATGAATGTAGCTTTTTTGATAAAATAGGAGAATATTTTCTTTGGATTTGATGTTTCAATAAGTCTTAACTGTTTCTTGTTGGAATTTGATGCTTTCCCGTTTCTGGTTACTGTGCTAACAAGGAAATTTTGGTGCTTCAACTGACCATTGGCTGATTATGGCGAAATAAATTACGTCATAAGAGTTTCCTGTTCTTGCTTCCCCCCTTAAAGTGTGTGAGCTTATGATCCTGGTTCCCAAATATGGAACCAGTAACTTTGACTAATAAGTAATAACGGGCTTTGGTGGTGGGTATGGTAGATTTTATTGCCAAAAATTCATTGGTCTTGTTAGGAATGGCGTGATGTCAAACTTGAAATTTCCATTTCCACAAGTTTAAAGGCTATTTTGTGTAAGGGCTGTGAACAAATGTTCTAAAAGGTGTGAGATATATTAAAGAAATAGGGGACCGAGCCTTGGGGGAGGAGGTCAGAGGCAAAGGATGCACACAGGTAATGTTGGATAGGCATGTAGTCCTTTATAGAATCCCACCGATCTTCCCTAACAATAGTCATAGAAGAATTAGAAACTTTAGACTCTTTTTCCAAAAATATTATTCTTTGTGTCCATGTAGGTCTATTTAAAGCAATGTTGCTAACTTGCGAATAGTTTGTGGCCAGTTAGCTAGTAGGCTTATAGCTATTTGCATTTAGACCTCTCCAGATCCTACTGTTGCTGGAGGATTGATATTGTACTGTAATACTTTCCTGTACTAATTTGTGTTTACAAAGGCCTGCTATGAGCATCAAATACCCTAAAATGCCTCAAATGTGTATGATTTCCTCACTATTACAACAGCCAAAACAAGTAAACCTAAATAACTGGAGATAAAGGAGCCCCTAAGGCGGGTCTTCCTTTTCACCTTGTAATGCAGTGCCTTAGGGGCTCCTTTTTGTGCAGTTATTTAGGTTTACTTGTTTTGGCTGTTGTAATAGTGAGGAAATCATATTTCCAGTTAAAATTAGGAATTATTGATATAGTTTTCACAGATACTTTGTATTAAACTTGTGATTTCTCGGCACACAGAACAAATTGCTTCTCAGTTTCTGAATTGCAGTATGAAATCTTACAGATTTCGGTTTCTTGGGTTCAATTAATTTAAAATGACACTCTGCTGCTACACTTTAGTTTTGTTAGATGTCATATCAACTCTTGGTTCCTGTTTTGTCACGTTTTTCCCTGGTTTAATGTTTGTCAACTTACTCATGTGTATCCAACATTTGCCTGGATAAAGTACTATTGTATCAGTTTGTGGCTGTAATATCTATCAGTTCTCATTTGGTATAATAATAATGCAGGAGTGTGCAATCATGCATTTCATTTCCACTGCATCAGCAGATGGCTGAAAACCCGTCAAGTTTGTCCTCTAGGTTCGTTTACTTACTGTTTCTGCAAACTATTTTATATCTGTTACTGCTATAATATTAATATCCCTGAATCTCGTTTTTAATTTGATTTACCAGACAACAGCGAGTGGGAGTTCCAGAAGTATGGCCATTAATTAGAAGAGCTGTAACCTTAGCTTGCTCATTGGAGTCCACAAAATTTGAGGGTGTGTGTGTGCAGATGTGTGGAGAGTGCCTACTTCTTTATTGTTTACAACTTTCTGTCGCATGACGTTAAAACTCAACTTACCAGTTTTAGGGTGTGAATTGTTGGGCATTGACAACCATTGCTACTTTCAGAGAGAAAGCTCTATCTTGTGACTCTTGTTCCATATTGCAGATATTTCATCTAAAATGCCCTCTTTATTACAATGGTTGTATATAAATTACTACAGTATGAAGCATGTCAACAAACTACTCTCTTGAGTTCCAACTTGTAAAGATGGCTGTGGGTTGGGCTTCGGGCCGATCCTGTGATTCGTGGGCCTAACTGGGCTGGGCCGAAAAGTTCAAAACCAGACCCAGACCAACAGCTTTCGGGCTGGGCCGGTCCATCGTGCCTAAGGCTAATTTTATTAAATTTAGTGTGCTTTGACGTGCTGTGTTTGGTCGTGTTTTTTCTAAAAATTTAAGGCCCATGTCTGGCCTTGGACTTCGTGCTTGTGCCGGGCCGTGTTTTTGTGCTTGTGCTGGGCTGGGCTTTTTTTGTGCAGGGTTGGGCTTCGGGCTTGCCCGGCCCACAGCCATCTTTACTCGTCCGTCATCAACATATTTTAATAACAGAGTAATTTTAGGACTAAGACACTGCATAAAGAACTTGTACAGAGTACTTTTAATAACTCC

mRNA sequence

CTAAGGACTGAGTAATGCCCTAATATAATATTACATTCAATCGGAATACGAAACGACAAAGAGGAGAGAGAGAGAGAGAGAAAGAGAAAGCGTCAATGGCAGCTACAGACGTGTCAACTTTTGTTCCCGCCGGCGAGGGTTCGAACGCTGCTGCTGGCCCATCTTCATCTTCCAAGAAACCGAAGCGTTTCGAAATCAAAAAGTGGAACGCCGTTTCTCTCTGGGCTTGGGATATTGTGGTCGATAATTGCGCAATTTGTAGGAACCACATCATGGATCTCTGCATTGAGTGCCAAGCTAACCAGGCGAGTGCTACCAGTGAAGAGTGTACTGTTGCTTGGGGAGTGTGCAATCATGCATTTCATTTCCACTGCATCAGCAGATGGCTGAAAACCCGTCAAGTTTGTCCTCTAGACAACAGCGAGTGGGAGTTCCAGAAGTATGGCCATTAATTAGAAGAGCTGTAACCTTAGCTTGCTCATTGGAGTCCACAAAATTTGAGGGTGTGTGTGTGCAGATGTGTGGAGAGTGCCTACTTCTTTATTGTTTACAACTTTCTGTCGCATGACGTTAAAACTCAACTTACCAGTTTTAGGGTGTGAATTGTTGGGCATTGACAACCATTGCTACTTTCAGAGAGAAAGCTCTATCTTGTGACTCTTGTTCCATATTGCAGATATTTCATCTAAAATGCCCTCTTTATTACAATGGTTGTATATAAATTACTACAGTATGAAGCATGTCAACAAACTACTCTCTTGAGTTCCAACTTGTAAAGATGGCTGTGGGTTGGGCTTCGGGCCGATCCTGTGATTCGTGGGCCTAACTGGGCTGGGCCGAAAAGTTCAAAACCAGACCCAGACCAACAGCTTTCGGGCTGGGCCGGTCCATCGTGCCTAAGGCTAATTTTATTAAATTTAGTGTGCTTTGACGTGCTGTGTTTGGTCGTGTTTTTTCTAAAAATTTAAGGCCCATGTCTGGCCTTGGACTTCGTGCTTGTGCCGGGCCGTGTTTTTGTGCTTGTGCTGGGCTGGGCTTTTTTTGTGCAGGGTTGGGCTTCGGGCTTGCCCGGCCCACAGCCATCTTTACTCGTCCGTCATCAACATATTTTAATAACAGAGTAATTTTAGGACTAAGACACTGCATAAAGAACTTGTACAGAGTACTTTTAATAACTCC

Coding sequence (CDS)

ATGGCAGCTACAGACGTGTCAACTTTTGTTCCCGCCGGCGAGGGTTCGAACGCTGCTGCTGGCCCATCTTCATCTTCCAAGAAACCGAAGCGTTTCGAAATCAAAAAGTGGAACGCCGTTTCTCTCTGGGCTTGGGATATTGTGGTCGATAATTGCGCAATTTGTAGGAACCACATCATGGATCTCTGCATTGAGTGCCAAGCTAACCAGGCGAGTGCTACCAGTGAAGAGTGTACTGTTGCTTGGGGAGTGTGCAATCATGCATTTCATTTCCACTGCATCAGCAGATGGCTGAAAACCCGTCAAGTTTGTCCTCTAGACAACAGCGAGTGGGAGTTCCAGAAGTATGGCCATTAA

Protein sequence

MAATDVSTFVPAGEGSNAAAGPSSSSKKPKRFEIKKWNAVSLWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo26110.1	Spo26110.1	mRNA

Homology

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BLAST of Spo26110.1 vs. NCBI nr
Match: gi|902213429|gb|KNA17269.1| (hypothetical protein SOVF_081510 [Spinacia oleracea])

HSP 1 Score: 257.7 bits (657), Expect = 1.000e-65
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 1

		  
Query: 1   MAATDVSTFVPAGEGSNAAAGPSSSSKKPKRFEIKKWNAVSLWAWDIVVDNCAICRNHIM 60
           MAATDVSTFVPAGEGSNAAAGPSSSSKKPKRFEIKKWNAVSLWAWDIVVDNCAICRNHIM
Sbjct: 1   MAATDVSTFVPAGEGSNAAAGPSSSSKKPKRFEIKKWNAVSLWAWDIVVDNCAICRNHIM 60

Query: 61  DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 119
           DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 61  DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118

[Close]

BLAST of Spo26110.1 vs. NCBI nr
Match: gi|672144042|ref|XP_008795912.1| (PREDICTED: RING-box protein 1a [Phoenix dactylifera])

HSP 1 Score: 238.4 bits (607), Expect = 6.300e-60
Identity = 108/115 (93.91%), Postives = 112/115 (97.39%), Query Frame = 1

		  
Query: 4   TDVSTFVPAGEGSNAAAGPSSSSKKPKRFEIKKWNAVSLWAWDIVVDNCAICRNHIMDLC 63
           TD++  VPAGEGS+ AAGPSSSSKKPKRFEIKKWNAV+LWAWDIVVDNCAICRNHIMDLC
Sbjct: 6   TDIN-MVPAGEGSSGAAGPSSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLC 65

Query: 64  IECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 119
           IECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 66  IECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 119

[Close]

BLAST of Spo26110.1 vs. NCBI nr
Match: gi|743838517|ref|XP_010936721.1| (PREDICTED: RING-box protein 1a-like [Elaeis guineensis])

HSP 1 Score: 236.9 bits (603), Expect = 1.800e-59
Identity = 107/115 (93.04%), Postives = 111/115 (96.52%), Query Frame = 1

		  
Query: 4   TDVSTFVPAGEGSNAAAGPSSSSKKPKRFEIKKWNAVSLWAWDIVVDNCAICRNHIMDLC 63
           TD++  VP GEGS+ AAGPSSSSKKPKRFEIKKWNAV+LWAWDIVVDNCAICRNHIMDLC
Sbjct: 6   TDIN-MVPVGEGSSGAAGPSSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLC 65

Query: 64  IECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 119
           IECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 66  IECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 119

[Close]

BLAST of Spo26110.1 vs. NCBI nr
Match: gi|672118517|ref|XP_008782469.1| (PREDICTED: RING-box protein 1a-like [Phoenix dactylifera])

HSP 1 Score: 236.5 bits (602), Expect = 2.400e-59
Identity = 107/115 (93.04%), Postives = 111/115 (96.52%), Query Frame = 1

		  
Query: 4   TDVSTFVPAGEGSNAAAGPSSSSKKPKRFEIKKWNAVSLWAWDIVVDNCAICRNHIMDLC 63
           TD++  VP GEGS+ AAGPSSSSKKPKRFEIKKWNAV+LWAWDIVVDNCAICRNHIMDLC
Sbjct: 6   TDIN-MVPIGEGSSGAAGPSSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLC 65

Query: 64  IECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 119
           IECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 66  IECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 119

[Close]

BLAST of Spo26110.1 vs. NCBI nr
Match: gi|338227614|gb|AEI90836.1| (RBX1 [Hevea brasiliensis])

HSP 1 Score: 236.1 bits (601), Expect = 3.100e-59
Identity = 107/115 (93.04%), Postives = 111/115 (96.52%), Query Frame = 1

		  
Query: 4   TDVSTFVPAGEGSNAAAGPSSSSKKPKRFEIKKWNAVSLWAWDIVVDNCAICRNHIMDLC 63
           TDV T VPAGE S++ AGPSSS+KKPKRFEIKKWNAV+LWAWDIVVDNCAICRNHIMDLC
Sbjct: 3   TDV-TMVPAGEASSSVAGPSSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLC 62

Query: 64  IECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 119
           IECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 63  IECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 116

[Close]

BLAST of Spo26110.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RE64_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_081510 PE=4 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 7.000e-66
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 1

		  
Query: 1   MAATDVSTFVPAGEGSNAAAGPSSSSKKPKRFEIKKWNAVSLWAWDIVVDNCAICRNHIM 60
           MAATDVSTFVPAGEGSNAAAGPSSSSKKPKRFEIKKWNAVSLWAWDIVVDNCAICRNHIM
Sbjct: 1   MAATDVSTFVPAGEGSNAAAGPSSSSKKPKRFEIKKWNAVSLWAWDIVVDNCAICRNHIM 60

Query: 61  DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 119
           DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 61  DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118

[Close]

BLAST of Spo26110.1 vs. UniProtKB/TrEMBL
Match: G0WRD1_HEVBR (RBX1 OS=Hevea brasiliensis PE=2 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 2.200e-59
Identity = 107/115 (93.04%), Postives = 111/115 (96.52%), Query Frame = 1

		  
Query: 4   TDVSTFVPAGEGSNAAAGPSSSSKKPKRFEIKKWNAVSLWAWDIVVDNCAICRNHIMDLC 63
           TDV T VPAGE S++ AGPSSS+KKPKRFEIKKWNAV+LWAWDIVVDNCAICRNHIMDLC
Sbjct: 3   TDV-TMVPAGEASSSVAGPSSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLC 62

Query: 64  IECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 119
           IECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 63  IECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 116

[Close]

BLAST of Spo26110.1 vs. UniProtKB/TrEMBL
Match: A9NMC5_PICSI (Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 6.300e-59
Identity = 107/119 (89.92%), Postives = 114/119 (95.80%), Query Frame = 1

		  
Query: 1   MAATDVS-TFVPAGEGSNAAAGPSSSSKKPKRFEIKKWNAVSLWAWDIVVDNCAICRNHI 60
           MA+TD+  T VP+GEGS+A AGPS+S+KK KRFEIKKWNAV+LWAWDIVVDNCAICRNHI
Sbjct: 1   MASTDIDMTPVPSGEGSSAQAGPSTSTKKAKRFEIKKWNAVALWAWDIVVDNCAICRNHI 60

Query: 61  MDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 119
           MDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 61  MDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 119

[Close]

BLAST of Spo26110.1 vs. UniProtKB/TrEMBL
Match: M0T5G4_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 2.400e-58
Identity = 108/119 (90.76%), Postives = 113/119 (94.96%), Query Frame = 1

		  
Query: 4   TDVSTFVPAGEGSNAAAGPS----SSSKKPKRFEIKKWNAVSLWAWDIVVDNCAICRNHI 63
           TD++  VPAGEGS++AAGPS    SSSKKPKRFEIKKWNAV+LWAWDIVVDNCAICRNHI
Sbjct: 6   TDINV-VPAGEGSSSAAGPSATASSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHI 65

Query: 64  MDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 119
           MDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 66  MDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 123

[Close]

BLAST of Spo26110.1 vs. UniProtKB/TrEMBL
Match: A0A022QK43_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a016386mg PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 7.000e-58
Identity = 109/121 (90.08%), Postives = 111/121 (91.74%), Query Frame = 1

		  
Query: 2   AATDVSTFVPAGEGSNAAA----GPSSSSKKPKRFEIKKWNAVSLWAWDIVVDNCAICRN 61
           A TDV T VPAGEGS+ A      P+SSSKKPKRFEIKKWNAVSLWAWDIVVDNCAICRN
Sbjct: 4   ADTDV-TMVPAGEGSSGAGPSNTNPTSSSKKPKRFEIKKWNAVSLWAWDIVVDNCAICRN 63

Query: 62  HIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYG 119
           HIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYG
Sbjct: 64  HIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYG 123

[Close]

BLAST of Spo26110.1 vs. ExPASy Swiss-Prot
Match: RBX1A_ARATH (RING-box protein 1a OS=Arabidopsis thaliana GN=RBX1A PE=1 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 1.400e-56
Identity = 99/111 (89.19%), Postives = 105/111 (94.59%), Query Frame = 1

		  
Query: 8   TFVPAGEGSNAAAGPSSSSKKPKRFEIKKWNAVSLWAWDIVVDNCAICRNHIMDLCIECQ 67
           T +PAGE S++ A  SSS+KK KRFEIKKW+AV+LWAWDIVVDNCAICRNHIMDLCIECQ
Sbjct: 9   TMIPAGEASSSVAA-SSSNKKAKRFEIKKWSAVALWAWDIVVDNCAICRNHIMDLCIECQ 68

Query: 68  ANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 119
           ANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 69  ANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118

[Close]

BLAST of Spo26110.1 vs. ExPASy Swiss-Prot
Match: RBX1A_DROME (RING-box protein 1A OS=Drosophila melanogaster GN=Roc1a PE=1 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 2.800e-52
Identity = 91/98 (92.86%), Postives = 94/98 (95.92%), Query Frame = 1

		  
Query: 22  PSSSSK-KPKRFEIKKWNAVSLWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTV 81
           PSSSSK   KRFE+KKWNAV+LWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTV
Sbjct: 11  PSSSSKGDKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTV 70

Query: 82  AWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 119
           AWGVCNHAFHFHCISRWLKTRQVCPLDN EW+FQKYGH
Sbjct: 71  AWGVCNHAFHFHCISRWLKTRQVCPLDNREWDFQKYGH 108

[Close]

BLAST of Spo26110.1 vs. ExPASy Swiss-Prot
Match: RBX1B_ARATH (RING-box protein 1b OS=Arabidopsis thaliana GN=RBX1B PE=2 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 8.200e-52
Identity = 92/106 (86.79%), Postives = 97/106 (91.51%), Query Frame = 1

		  
Query: 13  GEGSNAAAGPSSSSKKPKRFEIKKWNAVSLWAWDIVVDNCAICRNHIMDLCIECQANQAS 72
           GE S+ +  PSSSSK  KRFE+KKW+AV+LWAWDIVVDNCAICRNHIMDLCIEC ANQAS
Sbjct: 11  GESSSISV-PSSSSKNSKRFELKKWSAVALWAWDIVVDNCAICRNHIMDLCIECLANQAS 70

Query: 73  ATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 119
           ATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLD  EWEFQKYGH
Sbjct: 71  ATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDVCEWEFQKYGH 115

[Close]

BLAST of Spo26110.1 vs. ExPASy Swiss-Prot
Match: RBX1_MOUSE (E3 ubiquitin-protein ligase RBX1 OS=Mus musculus GN=Rbx1 PE=1 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.100e-51
Identity = 95/117 (81.20%), Postives = 99/117 (84.62%), Query Frame = 1

		  
Query: 2   AATDVSTFVPAGEGSNAAAGPSSSSKKPKRFEIKKWNAVSLWAWDIVVDNCAICRNHIMD 61
           AA DV T      G+N+ AG        KRFE+KKWNAV+LWAWDIVVDNCAICRNHIMD
Sbjct: 3   AAMDVDT----PSGTNSGAGK-------KRFEVKKWNAVALWAWDIVVDNCAICRNHIMD 62

Query: 62  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 119
           LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN EWEFQKYGH
Sbjct: 63  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 108

[Close]

BLAST of Spo26110.1 vs. ExPASy Swiss-Prot
Match: RBX1_HUMAN (E3 ubiquitin-protein ligase RBX1 OS=Homo sapiens GN=RBX1 PE=1 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.100e-51
Identity = 95/117 (81.20%), Postives = 99/117 (84.62%), Query Frame = 1

		  
Query: 2   AATDVSTFVPAGEGSNAAAGPSSSSKKPKRFEIKKWNAVSLWAWDIVVDNCAICRNHIMD 61
           AA DV T      G+N+ AG        KRFE+KKWNAV+LWAWDIVVDNCAICRNHIMD
Sbjct: 3   AAMDVDT----PSGTNSGAGK-------KRFEVKKWNAVALWAWDIVVDNCAICRNHIMD 62

Query: 62  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 119
           LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN EWEFQKYGH
Sbjct: 63  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 108

[Close]

BLAST of Spo26110.1 vs. TAIR (Arabidopsis)
Match: AT3G42830.1 (RING/U-box superfamily protein)

HSP 1 Score: 204.1 bits (518), Expect = 4.600e-53
Identity = 92/106 (86.79%), Postives = 97/106 (91.51%), Query Frame = 1

		  
Query: 13  GEGSNAAAGPSSSSKKPKRFEIKKWNAVSLWAWDIVVDNCAICRNHIMDLCIECQANQAS 72
           GE S+ +  PSSSSK  KRFE+KKW+AV+LWAWDIVVDNCAICRNHIMDLCIEC ANQAS
Sbjct: 11  GESSSISV-PSSSSKNSKRFELKKWSAVALWAWDIVVDNCAICRNHIMDLCIECLANQAS 70

Query: 73  ATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 119
           ATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLD  EWEFQKYGH
Sbjct: 71  ATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDVCEWEFQKYGH 115

[Close]

BLAST of Spo26110.1 vs. TAIR (Arabidopsis)
Match: AT5G20570.2 (RING-box 1)

HSP 1 Score: 197.2 bits (500), Expect = 5.600e-51
Identity = 97/135 (71.85%), Postives = 103/135 (76.30%), Query Frame = 1

		  
Query: 8   TFVPAGEGSNAAAGPSSSSKKPKRFEIKKWNAVSLWAWDIVVDNCAICRNHIMDLCIECQ 67
           T +PAGE S++ A  SSS+KK KRFEIKKW+AV+LWAWDIVVDNCAICRNHIMDLCIECQ
Sbjct: 9   TMIPAGEASSSVAA-SSSNKKAKRFEIKKWSAVALWAWDIVVDNCAICRNHIMDLCIECQ 68

Query: 68  ANQASATSEECTVAW----GVCN--------------------HAFHFHCISRWLKTRQV 119
           ANQASATSEECTVAW      CN                    HAFHFHCISRWLKTRQV
Sbjct: 69  ANQASATSEECTVAWEDDQNNCNKYFCILDCSMKDDHLEGVCNHAFHFHCISRWLKTRQV 128

[Close]

BLAST of Spo26110.1 vs. TAIR (Arabidopsis)
Match: AT3G05870.1 (anaphase-promoting complex/cyclosome 11)

HSP 1 Score: 80.5 bits (197), Expect = 7.700e-16
Identity = 35/91 (38.46%), Postives = 50/91 (54.95%), Query Frame = 1

		  
Query: 28  KPKRFEIKKWNAVSLWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNH 87
           K K   I  W+AV+ W WD   + C ICR      C +C+        ++C + WG CNH
Sbjct: 2   KVKILRILLWHAVASWTWDAQDETCGICRMAFDGCCPDCKL-----PGDDCPLIWGACNH 61

Query: 88  AFHFHCISRWL--KTRQV-CPLDNSEWEFQK 116
           AFH HCI +W+  +T Q  CP+   EW+F++
Sbjct: 62  AFHLHCILKWVNSQTSQAHCPMCRREWQFKE 87

The following BLAST results are available for this feature:

BLAST of Spo26110.1 vs. NCBI nr
BLAST of Spo26110.1 vs. UniProtKB/TrEMBL
BLAST of Spo26110.1 vs. ExPASy Swiss-Prot
BLAST of Spo26110.1 vs. TAIR (Arabidopsis)

BLAST of Spo26110.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
gi\|902213429\|gb\|KNA17269.1\|	1.0e-65	100.	hypothetical protein SOVF_0815...	[more]
gi\|672144042\|ref\|XP_008795912.1\|	6.3e-60	93.9	PREDICTED: RING-box protein 1a...	[more]
gi\|743838517\|ref\|XP_010936721.1\|	1.8e-59	93.0	PREDICTED: RING-box protein 1a...	[more]
gi\|672118517\|ref\|XP_008782469.1\|	2.4e-59	93.0	PREDICTED: RING-box protein 1a...	[more]
gi\|338227614\|gb\|AEI90836.1\|	3.1e-59	93.0	RBX1 [Hevea brasiliensis]	[more]

BLAST of Spo26110.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
A0A0K9RE64_SPIOL	7.0e-66	100.	Uncharacterized protein OS=Spi...	[more]
G0WRD1_HEVBR	2.2e-59	93.0	RBX1 OS=Hevea brasiliensis PE=...	[more]
A9NMC5_PICSI	6.3e-59	89.9	Putative uncharacterized prote...	[more]
M0T5G4_MUSAM	2.4e-58	90.7	Uncharacterized protein OS=Mus...	[more]
A0A022QK43_ERYGU	7.0e-58	90.0	Uncharacterized protein OS=Ery...	[more]

BLAST of Spo26110.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
RBX1A_ARATH	1.4e-56	89.1	RING-box protein 1a OS=Arabido...	[more]
RBX1A_DROME	2.8e-52	92.8	RING-box protein 1A OS=Drosoph...	[more]
RBX1B_ARATH	8.2e-52	86.7	RING-box protein 1b OS=Arabido...	[more]
RBX1_MOUSE	1.1e-51	81.2	E3 ubiquitin-protein ligase RB...	[more]
RBX1_HUMAN	1.1e-51	81.2	E3 ubiquitin-protein ligase RB...	[more]

BLAST of Spo26110.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3

Position :

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Match Name	E-value	Identity	Description
AT3G42830.1	4.6e-53	86.7	RING/U-box superfamily protein	[more]
AT5G20570.2	5.6e-51	71.8	RING-box 1	[more]
AT3G05870.1	7.7e-16	38.4	anaphase-promoting complex/cyc...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 63..108 score: 9
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10		coord: 30..117 score: 1.8
IPR024766	Zinc finger, RING-H2-type	PFAM	PF12678	zf-rbx1	coord: 50..108 score: 2.6
None	No IPR available	PANTHER	PTHR11210	RING BOX	coord: 3..118 score: 1.1
None	No IPR available	PANTHER	PTHR11210:SF26	SUBFAMILY NOT NAMED	coord: 3..118 score: 1.1
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 30..115 score: 2.65

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006446	regulation of translational initiation
biological_process	GO:0006457	protein folding
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0046487	glyoxylate metabolic process
biological_process	GO:0009396	folic acid-containing compound biosynthetic process
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0006412	translation
biological_process	GO:0001731	formation of translation preinitiation complex
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005665	DNA-directed RNA polymerase II, core complex
cellular_component	GO:0016282	eukaryotic 43S preinitiation complex
cellular_component	GO:0033290	eukaryotic 48S preinitiation complex
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005852	eukaryotic translation initiation factor 3 complex
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0004488	methylenetetrahydrofolate dehydrogenase (NADP+) activity
molecular_function	GO:0004477	methenyltetrahydrofolate cyclohydrolase activity
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0051082	unfolded protein binding
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0019904	protein domain specific binding
molecular_function	GO:0031369	translation initiation factor binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo04208	0.71	Barchart \| Table
Spo06681	0.70	Barchart \| Table
Spo14849	0.69	Barchart \| Table
Spo05849	0.68	Barchart \| Table
Spo16627	0.67	Barchart \| Table
Spo05455	0.67	Barchart \| Table
Spo24106	0.67	Barchart \| Table
Spo19967	0.66	Barchart \| Table
Spo23292	0.66	Barchart \| Table
Spo09584	0.65	Barchart \| Table
Spo01617	0.65	Barchart \| Table