Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CTTAATTAATTAATTATTAATTCAATCAACTGTTCCAATTTTTCACCATTTTTTTAAGATTCCCATAAATTAAAAACAACACGTGTTTATTTTCCCCCAACCAACCAAACAACTGTACACCTCCTTTTTTTTTATAAAAATCAAAAATAATTTAAATTAAATTTACCACTCATTTATAAAAAGGTCACCCGCCTCCCTTCTTTCTTCTTCTCCCACCTCCTTTTCATTTTCTCTCTCCTCCATTTTTATTCCTCGTGGCTAAATCTAAGCAACCCATCAAATATTCTTCTTCAACTCTTTTAAAATCTCCAATATTTTTCGATTCTTTGTTAAATATTTTGTTATTGGGGTTTAACGATTTGATTGAATTCGTAATCGGAAAGTATGTCTAGCTCGTCGGTGATTGGTGATTCCGGTAGATTTCCCGGCCAAAAGATGAGTTTCTCGCAGACTTGTAACCTTCTCAGCCAGTATGTTAAGGAGAAACGCGCTCAAGGTGTTACTGGAAACATCGAGTCCCGAGGTATAGATCTATTATTATCTAAAATAAATTAAAACCCCAACTGTGTTTATATCATGTGCTTTTTTTTTGAGGGATTGATTTTGATTTATTTTCTGAGTTTTTATAGGACCAACTTCAACGATGAATTTGTTCCCTGTGAGTGGGAAACATGCAGCTGAAGATTCAAATGTTTGTGCTGGGAAAACAATCAATCTCTTTCCTCAGCTTTCTGGGTTTAATTCAAGGTAACGCCAAGTGTTTCCTCTTCTTGGTATTTTTCAATTTCCCTTAAGTAGTAAACGTCCTATTTTGTTTTTGTTACGCAATTACTATTATTTTGTACATATAACGTGTGTGTGATAATGTTATTGTTGCTTCACGTGATTGAAATCATGGAGCTATAAACTTTGGAGTTGTAATTAAGTAAGTTTTTGACTAATATGGAATTAGGATAAAGATACGGTAGATTTTAAGTTTAAGGGATTGTTAAACTATTTTATTTTGTTGTTCATAGCCTAAAATAAATTAATTTAATTACTAGTCAATTGATTTGTTGAATTTTTCATGCAATTTTGTTGGTGGTAAGAAGATATTAAATTACTAATCAATTGATTTGTCGAATTTTTCATGAAAATTTGTTCGTGGTGAGAAATTGATTGATGGGGTCCCCAAAATTTTAGGATAGGGGTAAGGTAATATGGTTGCATGAGGAAAATGGGTTATGTACTTTGGTTGCATTATAGAGCCTCCTCATTTATTGAAGTTGTTTTTTTTACCCCCCTTTGATTAGTTTGAGGGTAATTTTTGTCTTTTGATTAGTTTGAGAGGTCTTTGATGGGAGAGTTTTTCACATGTTTAACATGGCCTCGAGGTTGCGCTTAACCCGTGAATCCGTCACCACATGGAATTGGTTTTCAGATGGAACCTCGTAATCGTGTTTATACCAAAGCACTGTTTGGTTTGGCGTAAAACGTTTTCATTGTTTTTCTTTGAAAAACACAATTTCAAACTAGTTTTCTCTCGTGTGGTTCCTTTCAAAAAAAATTAGTAGAAAAAGGAAAAGGAGAGAAGATTGATGGGAAAAGAAAGAGGGAGGTAAGGAAGAAAAGTGAAAAAGTGGTTACGCGTTATTTGATTCTTGTTAACTAGAGATAACCTAAAAGTTGGTATATTTAGGAGCCAAAAAGCCCACACCATGAATGATTCTTCCAACCATAAGTTCAGATTTGTTGAAGCTTGTGTTAATTTTTGTTTTGTTTGGTCAATGGTTTCCCACTTTTGTTCAATCTTTCCTACACGGGAAAATCTGTTTCTAATATGTTTTACTCGTCGAATTTCAGCGTGAACAAGCGTGCTAACCCCGAGCCTCCGACTCCCCAAATGACCATCTTCTATGGAGGGCAAGTCTTGGTCTTTAATGACTTGCCGACTGACAAGGCAAAAGAAGTCATGGACCTAGCTTGTAGCTTTGAAGCTAGCCTCAAGAAGAGGAAAGTCGAACCTACCAGTTCGAGTCCCCCTAGCCCGGTTGCAGCCCCTGTTCCTGCCCAAAACCCCAAACCAACCCTGAATCAGACCCTGATTCCAACCCAGAAATCAAACCAGAACTTGACTGTTGCTCCAAAATTTGTGAAGAACGTCATACCAGCTACCGTGCCTAATGTTTCTGGTAATTATTCTGTGCATGTTGAACTGTAATGACTTGTATTAAGGGGGTATTGTTATCTGTCTTTTGTTGGGTTTTCTGAACTATTATTATCAATCTTTTGTTTATGTAAACCACGCTTGTTTCAAACCTGCAGATCTGCCTATTGCTAGGAAGGCCTCACTCCACCGTTTCCTCGAGAAGAGAAAAGATAGGTAAGGGGTTCACTTTATTGGAGGTTTCATGTTTCTTTTCCTTTGAGTTAGGTAATAAGGATACATGTTGTAAAATTGTTGTTCACTTTGAGAATTGTTTGCTAAGAAACTGATTACAGTTTTGTAGAAACCCAAAGAACTCGAAACACATGACATAGTACCAATACTTCGGCCTTGTTCGGTTCACCTGATCTGGTCTGATTGTTCTAGTTTCTGGTCTGGCCTAAATGTTTTACATGAGTGTTTTTTGCCTTTTCTTTTCTGGTCGGGTCGGGTCTGGTCTGATTTGCTCAAGCAGTAAGAATAAGGTGATGAGAATAAAGCTTAAGCAACCATTACAATTTCGCTTGTATATAGTGGATTCTTAACAAGTATCTGATTTTGTTTATGTTTGACATTGAACAGGCTTGTGGGCAAACTCCCCGCGGAAATTCCAAATGGAAGCCCGGCAAAGCCCCTAGAGGGTAAGGCAGCGTGGCTCGGACTGAATTCTGTGCCAGTGTTTCAGATGCAGAAGCCGCAGCAGCAATCCTAGTAGTTATAGTATCATGTTATTTATGTATACTATAGGGCATTATATATATAATATGATGAAGATGATATAACCAATGAGCTTATTATTGTTATTAATTGTAGTGTTTAATTATTTATTTATGTAATTTGGGGTTGTTTTGGTTATTCGAAGCCCCAGTTTTTTAAGTTTAAGTTAGAGCTGACATTTTTGTGAACCTTTCTAGCTTATGTAATTATTTTAAGCTAGTCCAAGTTCATTTCTCAGTTGAAATGAATATAGTATATGATATATATTTGTTCTGGTATTATATTCTATAATGTTGTTTTCGAGTTTTTTATTCGATGTTGTAGAGGTAGAGCTAGTGGAATCGAACTTGAGCTGTCAATGGGTGATTTTGAGGACCAT CTTAATTAATTAATTATTAATTCAATCAACTGTTCCAATTTTTCACCATTTTTTTAAGATTCCCATAAATTAAAAACAACACGTGTTTATTTTCCCCCAACCAACCAAACAACTGTACACCTCCTTTTTTTTTATAAAAATCAAAAATAATTTAAATTAAATTTACCACTCATTTATAAAAAGGTCACCCGCCTCCCTTCTTTCTTCTTCTCCCACCTCCTTTTCATTTTCTCTCTCCTCCATTTTTATTCCTCGTGGCTAAATCTAAGCAACCCATCAAATATTCTTCTTCAACTCTTTTAAAATCTCCAATATTTTTCGATTCTTTGTTAAATATTTTGTTATTGGGGTTTAACGATTTGATTGAATTCGTAATCGGAAAGTATGTCTAGCTCGTCGGTGATTGGTGATTCCGGTAGATTTCCCGGCCAAAAGATGAGTTTCTCGCAGACTTGTAACCTTCTCAGCCAGTATGTTAAGGAGAAACGCGCTCAAGGTGTTACTGGAAACATCGAGTCCCGAGGACCAACTTCAACGATGAATTTGTTCCCTGTGAGTGGGAAACATGCAGCTGAAGATTCAAATGTTTGTGCTGGGAAAACAATCAATCTCTTTCCTCAGCTTTCTGGGTTTAATTCAAGCGTGAACAAGCGTGCTAACCCCGAGCCTCCGACTCCCCAAATGACCATCTTCTATGGAGGGCAAGTCTTGGTCTTTAATGACTTGCCGACTGACAAGGCAAAAGAAGTCATGGACCTAGCTTGTAGCTTTGAAGCTAGCCTCAAGAAGAGGAAAGTCGAACCTACCAGTTCGAGTCCCCCTAGCCCGGTTGCAGCCCCTGTTCCTGCCCAAAACCCCAAACCAACCCTGAATCAGACCCTGATTCCAACCCAGAAATCAAACCAGAACTTGACTGTTGCTCCAAAATTTGTGAAGAACGTCATACCAGCTACCGTGCCTAATGTTTCTGATCTGCCTATTGCTAGGAAGGCCTCACTCCACCGTTTCCTCGAGAAGAGAAAAGATAGGCTTGTGGGCAAACTCCCCGCGGAAATTCCAAATGGAAGCCCGGCAAAGCCCCTAGAGGGTAAGGCAGCGTGGCTCGGACTGAATTCTGTGCCAGTGTTTCAGATGCAGAAGCCGCAGCAGCAATCCTAGTAGTTATAGTATCATGTTATTTATGTATACTATAGGGCATTATATATATAATATGATGAAGATGATATAACCAATGAGCTTATTATTGTTATTAATTGTAGTGTTTAATTATTTATTTATGTAATTTGGGGTTGTTTTGGTTATTCGAAGCCCCAGTTTTTTAAGTTTAAGTTAGAGCTGACATTTTTGTGAACCTTTCTAGCTTATGTAATTATTTTAAGCTAGTCCAAGTTCATTTCTCAGTTGAAATGAATATAGTATATGATATATATTTGTTCTGGTATTATATTCTATAATGTTGTTTTCGAGTTTTTTATTCGATGTTGTAGAGGTAGAGCTAGTGGAATCGAACTTGAGCTGTCAATGGGTGATTTTGAGGACCAT ATGTCTAGCTCGTCGGTGATTGGTGATTCCGGTAGATTTCCCGGCCAAAAGATGAGTTTCTCGCAGACTTGTAACCTTCTCAGCCAGTATGTTAAGGAGAAACGCGCTCAAGGTGTTACTGGAAACATCGAGTCCCGAGGACCAACTTCAACGATGAATTTGTTCCCTGTGAGTGGGAAACATGCAGCTGAAGATTCAAATGTTTGTGCTGGGAAAACAATCAATCTCTTTCCTCAGCTTTCTGGGTTTAATTCAAGCGTGAACAAGCGTGCTAACCCCGAGCCTCCGACTCCCCAAATGACCATCTTCTATGGAGGGCAAGTCTTGGTCTTTAATGACTTGCCGACTGACAAGGCAAAAGAAGTCATGGACCTAGCTTGTAGCTTTGAAGCTAGCCTCAAGAAGAGGAAAGTCGAACCTACCAGTTCGAGTCCCCCTAGCCCGGTTGCAGCCCCTGTTCCTGCCCAAAACCCCAAACCAACCCTGAATCAGACCCTGATTCCAACCCAGAAATCAAACCAGAACTTGACTGTTGCTCCAAAATTTGTGAAGAACGTCATACCAGCTACCGTGCCTAATGTTTCTGATCTGCCTATTGCTAGGAAGGCCTCACTCCACCGTTTCCTCGAGAAGAGAAAAGATAGGCTTGTGGGCAAACTCCCCGCGGAAATTCCAAATGGAAGCCCGGCAAAGCCCCTAGAGGGTAAGGCAGCGTGGCTCGGACTGAATTCTGTGCCAGTGTTTCAGATGCAGAAGCCGCAGCAGCAATCCTAG MSSSSVIGDSGRFPGQKMSFSQTCNLLSQYVKEKRAQGVTGNIESRGPTSTMNLFPVSGKHAAEDSNVCAGKTINLFPQLSGFNSSVNKRANPEPPTPQMTIFYGGQVLVFNDLPTDKAKEVMDLACSFEASLKKRKVEPTSSSPPSPVAAPVPAQNPKPTLNQTLIPTQKSNQNLTVAPKFVKNVIPATVPNVSDLPIARKASLHRFLEKRKDRLVGKLPAEIPNGSPAKPLEGKAAWLGLNSVPVFQMQKPQQQS Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo10176.1 vs. NCBI nr
Match: gi|902165544|gb|KNA07118.1| (hypothetical protein SOVF_174730 [Spinacia oleracea]) HSP 1 Score: 507.3 bits (1305), Expect = 1.600e-140 Identity = 257/257 (100.00%), Postives = 257/257 (100.00%), Query Frame = 1
BLAST of Spo10176.1 vs. NCBI nr
Match: gi|731352436|ref|XP_010687548.1| (PREDICTED: protein TIFY 10A [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 372.9 bits (956), Expect = 4.600e-100 Identity = 193/256 (75.39%), Postives = 216/256 (84.38%), Query Frame = 1
BLAST of Spo10176.1 vs. NCBI nr
Match: gi|291621305|dbj|BAI94490.1| (JAZ-like protein [Dianthus caryophyllus]) HSP 1 Score: 233.4 bits (594), Expect = 4.400e-58 Identity = 139/248 (56.05%), Postives = 165/248 (66.53%), Query Frame = 1
BLAST of Spo10176.1 vs. NCBI nr
Match: gi|225444663|ref|XP_002277157.1| (PREDICTED: protein TIFY 10A [Vitis vinifera]) HSP 1 Score: 169.1 bits (427), Expect = 1.000e-38 Identity = 126/290 (43.45%), Postives = 153/290 (52.76%), Query Frame = 1
BLAST of Spo10176.1 vs. NCBI nr
Match: gi|348076045|gb|AEP60132.1| (JAZ1 [Vitis rupestris]) HSP 1 Score: 166.8 bits (421), Expect = 5.000e-38 Identity = 125/290 (43.10%), Postives = 152/290 (52.41%), Query Frame = 1
BLAST of Spo10176.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QKA0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_174730 PE=4 SV=1) HSP 1 Score: 507.3 bits (1305), Expect = 1.100e-140 Identity = 257/257 (100.00%), Postives = 257/257 (100.00%), Query Frame = 1
BLAST of Spo10176.1 vs. UniProtKB/TrEMBL
Match: A0A0J8EK80_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g190750 PE=4 SV=1) HSP 1 Score: 372.9 bits (956), Expect = 3.200e-100 Identity = 193/256 (75.39%), Postives = 216/256 (84.38%), Query Frame = 1
BLAST of Spo10176.1 vs. UniProtKB/TrEMBL
Match: D4QD68_DIACA (JAZ-like protein OS=Dianthus caryophyllus GN=DcJAZ1 PE=2 SV=1) HSP 1 Score: 233.4 bits (594), Expect = 3.100e-58 Identity = 139/248 (56.05%), Postives = 165/248 (66.53%), Query Frame = 1
BLAST of Spo10176.1 vs. UniProtKB/TrEMBL
Match: F6HGN3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g00710 PE=4 SV=1) HSP 1 Score: 169.1 bits (427), Expect = 7.100e-39 Identity = 126/290 (43.45%), Postives = 153/290 (52.76%), Query Frame = 1
BLAST of Spo10176.1 vs. UniProtKB/TrEMBL
Match: G4XSW1_9ROSI (JAZ1 OS=Vitis rupestris PE=2 SV=1) HSP 1 Score: 166.8 bits (421), Expect = 3.500e-38 Identity = 125/290 (43.10%), Postives = 152/290 (52.41%), Query Frame = 1
BLAST of Spo10176.1 vs. ExPASy Swiss-Prot
Match: TI10A_ARATH (Protein TIFY 10A OS=Arabidopsis thaliana GN=TIFY10A PE=1 SV=1) HSP 1 Score: 132.9 bits (333), Expect = 5.100e-30 Identity = 106/272 (38.97%), Postives = 135/272 (49.63%), Query Frame = 1
BLAST of Spo10176.1 vs. ExPASy Swiss-Prot
Match: TI10B_ORYSJ (Protein TIFY 10b OS=Oryza sativa subsp. japonica GN=TIFY10B PE=1 SV=1) HSP 1 Score: 118.6 bits (296), Expect = 9.900e-26 Identity = 94/246 (38.21%), Postives = 118/246 (47.97%), Query Frame = 1
BLAST of Spo10176.1 vs. ExPASy Swiss-Prot
Match: TI10B_ORYSI (Protein TIFY 10b OS=Oryza sativa subsp. indica GN=TIFY10B PE=3 SV=1) HSP 1 Score: 118.6 bits (296), Expect = 9.900e-26 Identity = 90/240 (37.50%), Postives = 112/240 (46.67%), Query Frame = 1
BLAST of Spo10176.1 vs. ExPASy Swiss-Prot
Match: TI10B_ARATH (Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10B PE=1 SV=1) HSP 1 Score: 112.1 bits (279), Expect = 9.200e-24 Identity = 95/267 (35.58%), Postives = 125/267 (46.82%), Query Frame = 1
BLAST of Spo10176.1 vs. ExPASy Swiss-Prot
Match: TI10A_ORYSJ (Protein TIFY 10a OS=Oryza sativa subsp. japonica GN=TIFY10A PE=1 SV=1) HSP 1 Score: 105.5 bits (262), Expect = 8.600e-22 Identity = 87/234 (37.18%), Postives = 119/234 (50.85%), Query Frame = 1
BLAST of Spo10176.1 vs. TAIR (Arabidopsis)
Match: AT1G19180.1 (jasmonate-zim-domain protein 1) HSP 1 Score: 132.9 bits (333), Expect = 2.800e-31 Identity = 106/272 (38.97%), Postives = 135/272 (49.63%), Query Frame = 1
BLAST of Spo10176.1 vs. TAIR (Arabidopsis)
Match: AT1G74950.1 (TIFY domain/Divergent CCT motif family protein) HSP 1 Score: 112.1 bits (279), Expect = 5.200e-25 Identity = 95/267 (35.58%), Postives = 125/267 (46.82%), Query Frame = 1
BLAST of Spo10176.1 vs. TAIR (Arabidopsis)
Match: AT1G17380.1 (jasmonate-zim-domain protein 5) HSP 1 Score: 80.9 bits (198), Expect = 1.300e-15 Identity = 75/229 (32.75%), Postives = 110/229 (48.03%), Query Frame = 1
BLAST of Spo10176.1 vs. TAIR (Arabidopsis)
Match: AT1G72450.1 (jasmonate-zim-domain protein 6) HSP 1 Score: 78.2 bits (191), Expect = 8.300e-15 Identity = 72/242 (29.75%), Postives = 111/242 (45.87%), Query Frame = 1
BLAST of Spo10176.1 vs. TAIR (Arabidopsis)
Match: AT5G20900.1 (jasmonate-zim-domain protein 12) HSP 1 Score: 74.7 bits (182), Expect = 9.200e-14 Identity = 53/152 (34.87%), Postives = 83/152 (54.61%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo10176.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo10176.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo10176.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo10176.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
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