Spo18399 (gene)

Overview
NameSpo18399
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSuper_scaffold_27 : 1647860 .. 1650039 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCATAATCTTTCTCTCTCCTCTAAGTTCCTCCCTCTGTGAAACCCTAAAACTTGAAGACTTCAATGGCATACATTCACGGAGGCGGCTAATGTCTCGGCTATTGCACCATGACTCCAGCACGACCCTGCAAATACGGAAGGGTTTCGACGGGTGGTCATCTTGGGGGATCTGGCTGTTCGATTTGCGAGTGGAGGTTGACGAAGCGTTTATGTCGCCTCAGATTTCCCTCTCTCTCTCCTCTCCCATGTCAACGGCAATTCATTTCTGCTATTTCATATATTATCAATTTGATTCCAACACTAAATCAGTTGAATTTCTAATTGCGATTCTAAAAATTGAAGATTTAAACTTGATATAAATGTGTAGGAGATGGTAAATTGGTAATCATGATATCAAAGTAGTTGCTGCTTATTATTTTAAGAACTTGATTCAACGGAATGTTCATGGAGAAGGTCGATCTGGCTTTTATAGTCAGGAATTTAAGGAGATGCTATTGAAAACTGGGCTTGGTATTGAACCCATTGAATTGAATTGTTTGATAATTTTTTCTCTAGGAAATTTGGGTTTGTTCTTAATTCGGAGTTGTTTGTGGGTGATGGGTTTTGTTTCGATAATTTGGAGATAGATGTAGAGCTCAAAACCCTAACAGAGGAATCTCTAGAGATTTATTTTCGTTTTGTGATTATTTTCAGGCATGTAGTTCTGCCATGGAAATTCCGCGACCTTCTACATGGAAATCGAAACATGGAAATCGAAGCCTTCCAAACACAAAAGTGGTGAATTACTGCAATTAAGTTTATGATCTGATTAAGGTGATAATCAATTAAAACGCAATATAGTTTAGTTTAATTTCTTGCATATTTCAGTTTAAGCGCACTGATTATGCTTTGTTAATTAGAACCCTATTAATTTCTTGATTCTTTAACCTTGGACTGTTTATGCTTTGTTTGAACTCTATTAATTTTTGGATTCTTTATTTTTGCACTGATTATGCTTTGTTAGAACTCTGTTAAGGGTTACAGTAATGTCGAATTTATCTTTATAGCCCAGACTCGAGAGTATGTGTATGAAATTGATAATTGTCCGAAATTTTAATTTGTTTATTTCCGGTAATTCAAGGAGGCTCGATGCGTACATATCCGTTATAAAGCTAGGGAGATCGAGGGTTCATGATTTTTTTGTTTGATTTGGTTAAATCTTAGAAATTTGATAAGTTATCTACAATTTTTTTTCCAGCTGCAATGGTACGCTATGAAATAACATGAAATTTCCTTGGCCTTCAATTCCTGCAGTTACTATACCGGTGAGAATATAATTCTTTTACCTTTTGCATTACTTATGTAAGTGTGCGGTTAATCCTGTCGCTCTTCCCTGAACAAATTCAGTTACTTTTGTAGATTGGATATGATGAAGCAGGGTTGCCTATCGGTCTACAATTTATCGGAAAACCTTAGGCTGAAGCAACATTAATTCACATGGCTTCTGCAGTCCAGGTAAACCTTCATGTTTTCAAGAACCCGTCTTGAAAAACTGTTACGGTCTTGCCATGATTTTACCAAAATAACTTTCTCATAATTGTCTCCTTCCAAATTTATCTCTGAACTTTTGAATTAATTTTTTGCTTTCTGATTTTTTGCGTGATTATTTTCTTTCCTTTGGTGTATTTATAAGGTGAATAAATTGTTCAAAGGTGCACCATTGCAGCATCTTAAGAATGTCTCAAAATCTGACTCCAAAAATGACATCTTACTTCGGAATATGCTTACAGGTCGATCGGACTTGGGATAATCATGCACTGAGAGAACCAGCTTTAGTTGCTCACTTAAAGTAATCCAGGATTTTTGGCTACGTTATTGAGAAACCCAATTTCTTCACTTTTACTTGGTTGGCAAAATTAGAATCACATACATCTTGGAGCATTCTGCAACTACTGGTAAACAATTCCTCACTCACAACTCATTACCTGCCATTTGACAAAATTTATGACACGGAGGATTTTATTTGAATCAATGCAAACTTCACTTAGTAAAAGGGCTCCGTTCACTTATATCAAGCTGAAAGTTTAATTTTGACACGAGTGAACTATGATTTTGCCGGGTTAGTATTATTGACTGTATTTTGCCGTTCAATTTCCCAATTTCAATTTTTAATGGGTGATTAATAGTTGTGAATATATGTG

mRNA sequence

CCATAATCTTTCTCTCTCCTCTAAGTTCCTCCCTCTGTGAAACCCTAAAACTTGAAGACTTCAATGGCATACATTCACGGAGGCGGCTAATGTCTCGGCTATTGCACCATGACTCCAGCACGACCCTGCAAATACGGAAGGGTTTCGACGGGTGGTCATCTTGGGGGATCTGGCTGTTCGATTTGCGAGTGGAGGTTGACGAAGCGTTTATGTCGCCTCAGATTTCCCTCTCTCTCTCCTCTCCCATGTCAACGGCATGTAGTTCTGCCATGGAAATTCCGCGACCTTCTACATGGAAATCGAAACATGGAAATCGAAGCCTTCCAAACACAAAAGTGGTGAATTACTGCAATTAAGTTTATGATCTGATTAAGCTGCAATGGTACGCTATGAAATAACATGAAATTTCCTTGGCCTTCAATTCCTGCAGTTACTATACCGATTGGATATGATGAAGCAGGGTTGCCTATCGGTCTACAATTTATCGGAAAACCTTAGGCTGAAGCAACATTAATTCACATGGCTTCTGCAGTCCAGGTCGATCGGACTTGGGATAATCATGCACTGAGAGAACCAGCTTTAGTTGCTCACTTAAAGTAATCCAGGATTTTTGGCTACGTTATTGAGAAACCCAATTTCTTCACTTTTACTTGGTTGGCAAAATTAGAATCACATACATCTTGGAGCATTCTGCAACTACTGGTAAACAATTCCTCACTCACAACTCATTACCTGCCATTTGACAAAATTTATGACACGGAGGATTTTATTTGAATCAATGCAAACTTCACTTAGTAAAAGGGCTCCGTTCACTTATATCAAGCTGAAAGTTTAATTTTGACACGAGTGAACTATGATTTTGCCGGGTTAGTATTATTGACTGTATTTTGCCGTTCAATTTCCCAATTTCAATTTTTAATGGGTGATTAATAGTTGTGAATATATGTG

Coding sequence (CDS)

ATGTCTCGGCTATTGCACCATGACTCCAGCACGACCCTGCAAATACGGAAGGGTTTCGACGGGTGGTCATCTTGGGGGATCTGGCTGTTCGATTTGCGAGTGGAGGTTGACGAAGCGTTTATGTCGCCTCAGATTTCCCTCTCTCTCTCCTCTCCCATGTCAACGGCATGTAGTTCTGCCATGGAAATTCCGCGACCTTCTACATGGAAATCGAAACATGGAAATCGAAGCCTTCCAAACACAAAAGTGGTGAATTACTGCAATTAA

Protein sequence

MSRLLHHDSSTTLQIRKGFDGWSSWGIWLFDLRVEVDEAFMSPQISLSLSSPMSTACSSAMEIPRPSTWKSKHGNRSLPNTKVVNYCN
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo18399.1Spo18399.1mRNA


Homology
The following BLAST results are available for this feature:
BLAST of Spo18399.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo18399.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo18399.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo18399.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo104060.93Barchart | Table
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Spo084120.65Barchart | Table