Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.GCTAACCAGTTTCCCCCAAATCATCACGAGGTGGAGCTTGATTTAATTTAAATGACTGCTTAACCTTTATTTTCCTTTTCTTTTTTTCTTAAGATCTCCAATCTGCATCTCCTTCCTCCTCAGTCCTCCCGCATTCTCCTCCTCTTGAGACCCTAACAACAAAAGCAGCGTATTGTAGTTGTAGTTGTATCCATAGTCGTCGTCGCCTCTGCCGATCACCTCCCCTTCTCGGCTGCTTCTATTCTCGGTAATTATCTACAATCGATTTGGATTTTATTTGTAGTTTTCTAAATTGTTTAATGTATTCTGGGTTGGGTTTTTTGTTATCTTTGTTTTGGTGTTGTGAAATTCGTATTATACTTGTACGATATGTTTCGATTTTTCTGATTTCAAATTGTTAAATATATCCTGTTGGGTTTGTTTTGGTGTTTATGAGAAATTCTACTTGAAATTCGTATTATCCGATTCCATTTTTCTGACAATCACCGTTTTATCTTTCCTTGGGACCACGGCGGACGCCCCTCCTGCCCTGCCTCAGGGACGGGCCTGTTGGGGGTTAATTTGATTTTCTTGAGGAGGGAGCAGAGTAGAAAAGAGCAATAATTTAAGGGCATAATAAAGTTTAGTTTGATTGAATTAATATTTATGAGTTTAGTTTTTTTTTGTTGTTGTTGTATGATTGACATTGGTGGCCTTGACGTTTATGTTAGCTTTGTTTTCTTTGATTTCCATCATAAGATAAGGGAAGTGCCTATGTAAATGGAACCCTGGGGATCAGGTTACTTGCCTGTTAACATTCTCATCCCTTTACAGTGAGTGTGGTTGTGATTTGGCAATGAAGTTAAGCTAGAATTTCTTTTTGATGATGCCGGTGAATTCATGGATAGAGTTAAAGTTTGAAATTTGAATGGTGCATTGTGGTTGTTGCAGAGATGGGTTTCATCATGGAGTTTGCGGAGAACTTGGTTTTGAGGTTGATGGAAGATCCAAAAGAAAGGGATAGAAAATTCAGGGATCACCTGTATTCATTACAAGATCGATGCAAGAAAACCAAGGAAATGTGGAGCTTGCCCTTGAGGCCATATGGGTTTTGGACCTTTGAACGTCATAACTCTCAGCTAGCTTGGGATGCTCAGATTACCAATGTAACTGGTCGTAGGGATCCTTATGACGAGGTCCTTGAAGGGTCTTCTAAATAA GCTAACCAGTTTCCCCCAAATCATCACGAGGTGGAGCTTGATTTAATTTAAATGACTGCTTAACCTTTATTTTCCTTTTCTTTTTTTCTTAAGATCTCCAATCTGCATCTCCTTCCTCCTCAGTCCTCCCGCATTCTCCTCCTCTTGAGACCCTAACAACAAAAGCAGCGTATTGTAGTTGTAGTTGTATCCATAGTCGTCGTCGCCTCTGCCGATCACCTCCCCTTCTCGGCTGCTTCTATTCTCGATGGGTTTCATCATGGAGTTTGCGGAGAACTTGGTTTTGAGGTTGATGGAAGATCCAAAAGAAAGGGATAGAAAATTCAGGGATCACCTGTATTCATTACAAGATCGATGCAAGAAAACCAAGGAAATGTGGAGCTTGCCCTTGAGGCCATATGGGTTTTGGACCTTTGAACGTCATAACTCTCAGCTAGCTTGGGATGCTCAGATTACCAATGTAACTGGTCGTAGGGATCCTTATGACGAGGTCCTTGAAGGGTCTTCTAAATAA ATGGGTTTCATCATGGAGTTTGCGGAGAACTTGGTTTTGAGGTTGATGGAAGATCCAAAAGAAAGGGATAGAAAATTCAGGGATCACCTGTATTCATTACAAGATCGATGCAAGAAAACCAAGGAAATGTGGAGCTTGCCCTTGAGGCCATATGGGTTTTGGACCTTTGAACGTCATAACTCTCAGCTAGCTTGGGATGCTCAGATTACCAATGTAACTGGTCGTAGGGATCCTTATGACGAGGTCCTTGAAGGGTCTTCTAAATAA MGFIMEFAENLVLRLMEDPKERDRKFRDHLYSLQDRCKKTKEMWSLPLRPYGFWTFERHNSQLAWDAQITNVTGRRDPYDEVLEGSSK Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo06473.1 vs. NCBI nr
Match: gi|902230042|gb|KNA21683.1| (hypothetical protein SOVF_040630 [Spinacia oleracea]) HSP 1 Score: 189.5 bits (480), Expect = 2.500e-45 Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1
BLAST of Spo06473.1 vs. NCBI nr
Match: gi|731319912|ref|XP_010670524.1| (PREDICTED: uncharacterized protein LOC104887566 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 179.1 bits (453), Expect = 3.400e-42 Identity = 83/88 (94.32%), Postives = 85/88 (96.59%), Query Frame = 1
BLAST of Spo06473.1 vs. NCBI nr
Match: gi|255547718|ref|XP_002514916.1| (PREDICTED: uncharacterized protein LOC8286798 [Ricinus communis]) HSP 1 Score: 167.2 bits (422), Expect = 1.300e-38 Identity = 74/88 (84.09%), Postives = 84/88 (95.45%), Query Frame = 1
BLAST of Spo06473.1 vs. NCBI nr
Match: gi|802724293|ref|XP_012085678.1| (PREDICTED: uncharacterized protein LOC105644811 [Jatropha curcas]) HSP 1 Score: 163.7 bits (413), Expect = 1.500e-37 Identity = 71/86 (82.56%), Postives = 82/86 (95.35%), Query Frame = 1
BLAST of Spo06473.1 vs. NCBI nr
Match: gi|590692431|ref|XP_007044053.1| (NADH-ubiquinone oxidoreductase 11 kDa subunit [Theobroma cacao]) HSP 1 Score: 161.4 bits (407), Expect = 7.300e-37 Identity = 71/86 (82.56%), Postives = 80/86 (93.02%), Query Frame = 1
BLAST of Spo06473.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RQD5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_040630 PE=4 SV=1) HSP 1 Score: 189.5 bits (480), Expect = 1.700e-45 Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1
BLAST of Spo06473.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CT86_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g041860 PE=4 SV=1) HSP 1 Score: 179.1 bits (453), Expect = 2.300e-42 Identity = 83/88 (94.32%), Postives = 85/88 (96.59%), Query Frame = 1
BLAST of Spo06473.1 vs. UniProtKB/TrEMBL
Match: B9RME7_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1080390 PE=4 SV=1) HSP 1 Score: 167.2 bits (422), Expect = 9.200e-39 Identity = 74/88 (84.09%), Postives = 84/88 (95.45%), Query Frame = 1
BLAST of Spo06473.1 vs. UniProtKB/TrEMBL
Match: A0A067JSF0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17960 PE=4 SV=1) HSP 1 Score: 163.7 bits (413), Expect = 1.000e-37 Identity = 71/86 (82.56%), Postives = 82/86 (95.35%), Query Frame = 1
BLAST of Spo06473.1 vs. UniProtKB/TrEMBL
Match: A0A068V0D2_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00038240001 PE=4 SV=1) HSP 1 Score: 161.4 bits (407), Expect = 5.100e-37 Identity = 71/86 (82.56%), Postives = 80/86 (93.02%), Query Frame = 1
BLAST of Spo06473.1 vs. TAIR (Arabidopsis)
Match: AT1G67350.1 (unknown protein) HSP 1 Score: 150.2 bits (378), Expect = 5.900e-37 Identity = 64/84 (76.19%), Postives = 76/84 (90.48%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo06473.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo06473.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo06473.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 0
BLAST of Spo06473.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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