Spo23058 (gene)

Overview
NameSpo23058
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionCP12 domain-containing protein 3
LocationSuper_scaffold_45 : 378243 .. 378689 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACATGGCATGTTTGAGTGTAGGTTTAGGAATGGTTCCAAAATCATTTCAGACAATCTCAAAGAAATCCGAAGCAAAGTCATCAGCAGGAGCAATTTCCCTAAGAAGATCAAATCTAAGAATGATTGCAAACTCATCATCATCATCATCATCATCCTCAAAATCAGGAGAAGATGAAGAGATGAAGATGAAGATCAAATACGAAGGGACTCGTAGGAGAGAGAAAGAGATGACAGAGATGATAGAGAAGAAGATTCGAGAAGCTGAAGAGGTTTGCGGTGAAGATAAGATGTCAGATGGGTGTAAAGTAGCTTGGGATGAAGTCGAAGAAATCAGTGCAGCTAAATCTCATCTTAGACTCCAATTGATGCATTCTGGAGATCCTCTTGAGAATTTCTGTCACCAACATCCTGAAACTGACGAGTGTCGTATTTACCAAGATTAG

mRNA sequence

ATGAACATGGCATGTTTGAGTGTAGGTTTAGGAATGGTTCCAAAATCATTTCAGACAATCTCAAAGAAATCCGAAGCAAAGTCATCAGCAGGAGCAATTTCCCTAAGAAGATCAAATCTAAGAATGATTGCAAACTCATCATCATCATCATCATCATCCTCAAAATCAGGAGAAGATGAAGAGATGAAGATGAAGATCAAATACGAAGGGACTCGTAGGAGAGAGAAAGAGATGACAGAGATGATAGAGAAGAAGATTCGAGAAGCTGAAGAGGTTTGCGGTGAAGATAAGATGTCAGATGGGTGTAAAGTAGCTTGGGATGAAGTCGAAGAAATCAGTGCAGCTAAATCTCATCTTAGACTCCAATTGATGCATTCTGGAGATCCTCTTGAGAATTTCTGTCACCAACATCCTGAAACTGACGAGTGTCGTATTTACCAAGATTAG

Coding sequence (CDS)

ATGAACATGGCATGTTTGAGTGTAGGTTTAGGAATGGTTCCAAAATCATTTCAGACAATCTCAAAGAAATCCGAAGCAAAGTCATCAGCAGGAGCAATTTCCCTAAGAAGATCAAATCTAAGAATGATTGCAAACTCATCATCATCATCATCATCATCCTCAAAATCAGGAGAAGATGAAGAGATGAAGATGAAGATCAAATACGAAGGGACTCGTAGGAGAGAGAAAGAGATGACAGAGATGATAGAGAAGAAGATTCGAGAAGCTGAAGAGGTTTGCGGTGAAGATAAGATGTCAGATGGGTGTAAAGTAGCTTGGGATGAAGTCGAAGAAATCAGTGCAGCTAAATCTCATCTTAGACTCCAATTGATGCATTCTGGAGATCCTCTTGAGAATTTCTGTCACCAACATCCTGAAACTGACGAGTGTCGTATTTACCAAGATTAG

Protein sequence

MNMACLSVGLGMVPKSFQTISKKSEAKSSAGAISLRRSNLRMIANSSSSSSSSSKSGEDEEMKMKIKYEGTRRREKEMTEMIEKKIREAEEVCGEDKMSDGCKVAWDEVEEISAAKSHLRLQLMHSGDPLENFCHQHPETDECRIYQD
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo23058.1Spo23058.1mRNA


Homology
[Close]
BLAST of Spo23058.1 vs. NCBI nr
Match: gi|902171827|gb|KNA08050.1| (hypothetical protein SOVF_166180, partial [Spinacia oleracea])

HSP 1 Score: 261.9 bits (668), Expect = 6.600e-67
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 1 

		  

Query: 10  LGMVPKSFQTISKKSEAKSSAGAISLRRSNLRMIANSSSSSSSSSKSGEDEEMKMKIKYE 69
           LGMVPKSFQTISKKSEAKSSAGAISLRRSNLRMIANSSSSSSSSSKSGEDEEMKMKIKYE
Sbjct: 1   LGMVPKSFQTISKKSEAKSSAGAISLRRSNLRMIANSSSSSSSSSKSGEDEEMKMKIKYE 60

Query: 70  GTRRREKEMTEMIEKKIREAEEVCGEDKMSDGCKVAWDEVEEISAAKSHLRLQLMHSGDP 129
           GTRRREKEMTEMIEKKIREAEEVCGEDKMSDGCKVAWDEVEEISAAKSHLRLQLMHSGDP
Sbjct: 61  GTRRREKEMTEMIEKKIREAEEVCGEDKMSDGCKVAWDEVEEISAAKSHLRLQLMHSGDP 120

Query: 130 LENFCHQHPETDECRIYQD 149
           LENFCHQHPETDECRIYQD
Sbjct: 121 LENFCHQHPETDECRIYQD 139
[Close]
BLAST of Spo23058.1 vs. NCBI nr
Match: gi|661888802|emb|CDP07245.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 118.6 bits (296), Expect = 9.100e-24
Identity = 70/129 (54.26%), Postives = 89/129 (68.99%), Query Frame = 1 

		  

Query: 29  SAGAISLRRSNLRMIANSSSSSSS-------SSKSGEDEEMKMKIKYEGTRRREKEMTEM 88
           ++GA++  R N + +   SS S           +SG      M  KY+GT+ REK++TEM
Sbjct: 66  ASGAVTAGRENRKQMRGGSSPSGMVIPKAGRMRRSGAQATTMMMGKYKGTQMREKQLTEM 125

Query: 89  IEKKIREAEEVCGEDKMSDGCKVAWDEVEEISAAKSHLRLQL--MHSGDPLENFCHQHPE 148
           IEKK+REA+EVCGED  SD CKVAWDEVEE+S AK+ LRL+L  MH  DPLE+FC  +PE
Sbjct: 126 IEKKVREAKEVCGEDGKSDECKVAWDEVEEVSQAKADLRLKLEIMHQ-DPLESFCQDNPE 185
[Close]
BLAST of Spo23058.1 vs. NCBI nr
Match: gi|698539804|ref|XP_009765560.1| (PREDICTED: calvin cycle protein CP12-3, chloroplastic [Nicotiana sylvestris])

HSP 1 Score: 118.2 bits (295), Expect = 1.200e-23
Identity = 62/112 (55.36%), Postives = 79/112 (70.54%), Query Frame = 1 

		  

Query: 37  RSNLRMIANSSSSSSSSSKSGEDEEMKMKIKYEGTRRREKEMTEMIEKKIREAEEVCGED 96
           R  L+ +  SS  S  S             KY+GT+ REK++TEMIEKK++EA+ VCGED
Sbjct: 25  RKGLQKVVMSSGGSGGSGSP----------KYKGTQMREKQLTEMIEKKVKEAKAVCGED 84

Query: 97  KMSDGCKVAWDEVEEISAAKSHLRLQLMHSGDPLENFCHQHPETDECRIYQD 149
             SD CKVAWDEVEE+S AK+HLR++L  + DPLE+FC  +PETDECRIY+D
Sbjct: 85  ARSDECKVAWDEVEEVSQAKAHLRIKLQLNQDPLESFCQDNPETDECRIYED 126
[Close]
BLAST of Spo23058.1 vs. NCBI nr
Match: gi|697174019|ref|XP_009595948.1| (PREDICTED: calvin cycle protein CP12-3, chloroplastic [Nicotiana tomentosiformis])

HSP 1 Score: 117.9 bits (294), Expect = 1.500e-23
Identity = 62/115 (53.91%), Postives = 81/115 (70.43%), Query Frame = 1 

		  

Query: 34  SLRRSNLRMIANSSSSSSSSSKSGEDEEMKMKIKYEGTRRREKEMTEMIEKKIREAEEVC 93
           +L R  L+ +  SS  S +              KY+GT+ REK++TEMIEKK++EA+ VC
Sbjct: 22  ALTRKGLQKVTMSSGGSGAP-------------KYKGTQMREKQLTEMIEKKVKEAKAVC 81

Query: 94  GEDKMSDGCKVAWDEVEEISAAKSHLRLQLMHSGDPLENFCHQHPETDECRIYQD 149
           GED  SD CKVAWDEVEE+S AK+HLR++L  + DPLE+FC  +PETDECRIY+D
Sbjct: 82  GEDARSDECKVAWDEVEEVSQAKAHLRIKLQLNQDPLESFCQDNPETDECRIYED 123
[Close]
BLAST of Spo23058.1 vs. NCBI nr
Match: gi|604331747|gb|EYU36605.1| (hypothetical protein MIMGU_mgv1a014758mg [Erythranthe guttata])

HSP 1 Score: 116.3 bits (290), Expect = 4.500e-23
Identity = 58/87 (66.67%), Postives = 73/87 (83.91%), Query Frame = 1 

		  

Query: 63  KMKIKYEGTRRREKEMTEMIEKKIREAEEVCGEDKMSDGCKVAWDEVEEISAAKSHLRLQ 122
           +MKI Y+GT  RE+ +TEMIEKK+ EA++VCGED+ SD CKVAWDEVEE+S AK+ LRL+
Sbjct: 94  EMKI-YKGTHMREQRLTEMIEKKVMEAKQVCGEDETSDECKVAWDEVEEVSQAKADLRLK 153

Query: 123 LMH-SGDPLENFCHQHPETDECRIYQD 149
           L H   DPLE+FC ++PETDECRIY+D
Sbjct: 154 LHHLQQDPLEHFCQENPETDECRIYED 179
[Close]
BLAST of Spo23058.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QLB3_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_166180 PE=4 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 4.600e-67
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 1 

		  

Query: 10  LGMVPKSFQTISKKSEAKSSAGAISLRRSNLRMIANSSSSSSSSSKSGEDEEMKMKIKYE 69
           LGMVPKSFQTISKKSEAKSSAGAISLRRSNLRMIANSSSSSSSSSKSGEDEEMKMKIKYE
Sbjct: 1   LGMVPKSFQTISKKSEAKSSAGAISLRRSNLRMIANSSSSSSSSSKSGEDEEMKMKIKYE 60

Query: 70  GTRRREKEMTEMIEKKIREAEEVCGEDKMSDGCKVAWDEVEEISAAKSHLRLQLMHSGDP 129
           GTRRREKEMTEMIEKKIREAEEVCGEDKMSDGCKVAWDEVEEISAAKSHLRLQLMHSGDP
Sbjct: 61  GTRRREKEMTEMIEKKIREAEEVCGEDKMSDGCKVAWDEVEEISAAKSHLRLQLMHSGDP 120

Query: 130 LENFCHQHPETDECRIYQD 149
           LENFCHQHPETDECRIYQD
Sbjct: 121 LENFCHQHPETDECRIYQD 139
[Close]
BLAST of Spo23058.1 vs. UniProtKB/TrEMBL
Match: A0A068UFC8_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00024453001 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 6.300e-24
Identity = 70/129 (54.26%), Postives = 89/129 (68.99%), Query Frame = 1 

		  

Query: 29  SAGAISLRRSNLRMIANSSSSSSS-------SSKSGEDEEMKMKIKYEGTRRREKEMTEM 88
           ++GA++  R N + +   SS S           +SG      M  KY+GT+ REK++TEM
Sbjct: 66  ASGAVTAGRENRKQMRGGSSPSGMVIPKAGRMRRSGAQATTMMMGKYKGTQMREKQLTEM 125

Query: 89  IEKKIREAEEVCGEDKMSDGCKVAWDEVEEISAAKSHLRLQL--MHSGDPLENFCHQHPE 148
           IEKK+REA+EVCGED  SD CKVAWDEVEE+S AK+ LRL+L  MH  DPLE+FC  +PE
Sbjct: 126 IEKKVREAKEVCGEDGKSDECKVAWDEVEEVSQAKADLRLKLEIMHQ-DPLESFCQDNPE 185
[Close]
BLAST of Spo23058.1 vs. UniProtKB/TrEMBL
Match: A0A022RCH1_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a014758mg PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 3.100e-23
Identity = 58/87 (66.67%), Postives = 73/87 (83.91%), Query Frame = 1 

		  

Query: 63  KMKIKYEGTRRREKEMTEMIEKKIREAEEVCGEDKMSDGCKVAWDEVEEISAAKSHLRLQ 122
           +MKI Y+GT  RE+ +TEMIEKK+ EA++VCGED+ SD CKVAWDEVEE+S AK+ LRL+
Sbjct: 94  EMKI-YKGTHMREQRLTEMIEKKVMEAKQVCGEDETSDECKVAWDEVEEVSQAKADLRLK 153

Query: 123 LMH-SGDPLENFCHQHPETDECRIYQD 149
           L H   DPLE+FC ++PETDECRIY+D
Sbjct: 154 LHHLQQDPLEHFCQENPETDECRIYED 179
[Close]
BLAST of Spo23058.1 vs. UniProtKB/TrEMBL
Match: M1ALW9_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400009928 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 9.100e-23
Identity = 52/80 (65.00%), Postives = 67/80 (83.75%), Query Frame = 1 

		  

Query: 67  KYEGTRRREKEMTEMIEKKIREAEEVCGEDKMSDGCKVAWDEVEEISAAKSHLRLQLMHS 126
           KY+GT+ REK++TEMIEKK++EA+EVCGED  SD CKVAWDEVEE+S AK+HLR++L  +
Sbjct: 41  KYKGTQMREKQLTEMIEKKVKEAKEVCGEDARSDECKVAWDEVEEVSQAKAHLRIKLQLN 100

Query: 127 GDPLENFCHQHPETDECRIY 147
            DPLE +C  +P+ DECR Y
Sbjct: 101 QDPLEPYCQDNPDADECRTY 120
[Close]
BLAST of Spo23058.1 vs. UniProtKB/TrEMBL
Match: A0A0V0HWT8_SOLCH (Putative calvin cycle protein CP12-3, chloroplastic-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 9.100e-23
Identity = 52/80 (65.00%), Postives = 67/80 (83.75%), Query Frame = 1 

		  

Query: 67  KYEGTRRREKEMTEMIEKKIREAEEVCGEDKMSDGCKVAWDEVEEISAAKSHLRLQLMHS 126
           KY+GT+ REK++TEMIEKK++EA+EVCGED  SD CKVAWDEVEE+S AK+HLR++L  +
Sbjct: 41  KYKGTQMREKQLTEMIEKKVKEAKEVCGEDARSDECKVAWDEVEEVSQAKAHLRIKLQLN 100

Query: 127 GDPLENFCHQHPETDECRIY 147
            DPLE +C  +P+ DECR Y
Sbjct: 101 QDPLEPYCQDNPDADECRTY 120
[Close]
BLAST of Spo23058.1 vs. ExPASy Swiss-Prot
Match: CP123_ARATH (Calvin cycle protein CP12-3, chloroplastic OS=Arabidopsis thaliana GN=CP12-3 PE=1 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.400e-21
Identity = 49/87 (56.32%), Postives = 72/87 (82.76%), Query Frame = 1 

		  

Query: 63  KMKIKYEGTRRREKEMTEMIEKKIREAEEVCGEDKMSDGCKVAWDEVEEISAAKSHLRLQ 122
           K   KY GT+ RE++++EMIE+K++EA EVC  ++MS+ C+VAWDEVEE+S A++ LR++
Sbjct: 48  KATAKYMGTKMREEKLSEMIEEKVKEATEVCEAEEMSEECRVAWDEVEEVSQARADLRIK 107

Query: 123 L-MHSGDPLENFCHQHPETDECRIYQD 149
           L + + DPLE+FC ++PETDECRIY+D
Sbjct: 108 LKLLNQDPLESFCQENPETDECRIYED 134
[Close]
BLAST of Spo23058.1 vs. ExPASy Swiss-Prot
Match: CP121_ARATH (Calvin cycle protein CP12-1, chloroplastic OS=Arabidopsis thaliana GN=CP12-1 PE=1 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 5.900e-15
Identity = 40/75 (53.33%), Postives = 53/75 (70.67%), Query Frame = 1 

		  

Query: 75  EKEMTEMIEKKIREAEEVCGEDKMSDGCKVAWDEVEEISAAKSHLRLQLMHSG-DPLENF 134
           E E++E +EK I+EA+E C +D +S  C  AWDEVEE+SAA SH R +    G DPLE +
Sbjct: 50  EGEISEKVEKSIQEAKETCADDPVSGECVAAWDEVEELSAAASHARDKKKAGGSDPLEEY 109

Query: 135 CHQHPETDECRIYQD 149
           C+ +PETDECR Y +
Sbjct: 110 CNDNPETDECRTYDN 124
[Close]
BLAST of Spo23058.1 vs. ExPASy Swiss-Prot
Match: CP122_ARATH (Calvin cycle protein CP12-2, chloroplastic OS=Arabidopsis thaliana GN=CP12-2 PE=1 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 5.500e-13
Identity = 37/75 (49.33%), Postives = 51/75 (68.00%), Query Frame = 1 

		  

Query: 75  EKEMTEMIEKKIREAEEVCGEDKMSDGCKVAWDEVEEISAAKSHLRLQLMHSG-DPLENF 134
           E  +++++EK I+EA+E C  D +S  C  AWDEVEE+SAA SH R +    G DPLE +
Sbjct: 57  EGGISDVVEKSIKEAQETCAGDPVSGECVAAWDEVEELSAAASHARDKKKADGSDPLEEY 116

Query: 135 CHQHPETDECRIYQD 149
           C  +PET+ECR Y +
Sbjct: 117 CKDNPETNECRTYDN 131
[Close]
BLAST of Spo23058.1 vs. ExPASy Swiss-Prot
Match: CP12_CHLRE (Calvin cycle protein CP12, chloroplastic OS=Chlamydomonas reinhardtii GN=CP12 PE=1 SV=2)

HSP 1 Score: 63.2 bits (152), Expect = 2.800e-9
Identity = 31/75 (41.33%), Postives = 47/75 (62.67%), Query Frame = 1 

		  

Query: 77  EMTEMIEKKIREAEEVCGEDKMSDGCKVAWDEVEEISAAKSHLRLQLMHS---GDPLENF 136
           ++ + ++  ++EAE+ C +   +D C VAWD VEE+SAA SH +  +       DPLE F
Sbjct: 34  DLNKKVQDAVKEAEDACAKGTSAD-CAVAWDTVEELSAAVSHKKDAVKADVTLTDPLEAF 93

Query: 137 CHQHPETDECRIYQD 149
           C   P+ DECR+Y+D
Sbjct: 94  CKDAPDADECRVYED 107
[Close]
BLAST of Spo23058.1 vs. TAIR (Arabidopsis)
Match: AT1G76560.1 (CP12 domain-containing protein 3)

HSP 1 Score: 104.0 bits (258), Expect = 8.200e-23
Identity = 49/87 (56.32%), Postives = 72/87 (82.76%), Query Frame = 1 

		  

Query: 63  KMKIKYEGTRRREKEMTEMIEKKIREAEEVCGEDKMSDGCKVAWDEVEEISAAKSHLRLQ 122
           K   KY GT+ RE++++EMIE+K++EA EVC  ++MS+ C+VAWDEVEE+S A++ LR++
Sbjct: 48  KATAKYMGTKMREEKLSEMIEEKVKEATEVCEAEEMSEECRVAWDEVEEVSQARADLRIK 107

Query: 123 L-MHSGDPLENFCHQHPETDECRIYQD 149
           L + + DPLE+FC ++PETDECRIY+D
Sbjct: 108 LKLLNQDPLESFCQENPETDECRIYED 134
[Close]
BLAST of Spo23058.1 vs. TAIR (Arabidopsis)
Match: AT2G47400.1 (CP12 domain-containing protein 1)

HSP 1 Score: 82.0 bits (201), Expect = 3.300e-16
Identity = 40/75 (53.33%), Postives = 53/75 (70.67%), Query Frame = 1 

		  

Query: 75  EKEMTEMIEKKIREAEEVCGEDKMSDGCKVAWDEVEEISAAKSHLRLQLMHSG-DPLENF 134
           E E++E +EK I+EA+E C +D +S  C  AWDEVEE+SAA SH R +    G DPLE +
Sbjct: 50  EGEISEKVEKSIQEAKETCADDPVSGECVAAWDEVEELSAAASHARDKKKAGGSDPLEEY 109

Query: 135 CHQHPETDECRIYQD 149
           C+ +PETDECR Y +
Sbjct: 110 CNDNPETDECRTYDN 124
[Close]
BLAST of Spo23058.1 vs. TAIR (Arabidopsis)
Match: AT3G62410.1 (CP12 domain-containing protein 2)

HSP 1 Score: 75.5 bits (184), Expect = 3.100e-14
Identity = 37/75 (49.33%), Postives = 51/75 (68.00%), Query Frame = 1 

		  

Query: 75  EKEMTEMIEKKIREAEEVCGEDKMSDGCKVAWDEVEEISAAKSHLRLQLMHSG-DPLENF 134
           E  +++++EK I+EA+E C  D +S  C  AWDEVEE+SAA SH R +    G DPLE +
Sbjct: 57  EGGISDVVEKSIKEAQETCAGDPVSGECVAAWDEVEELSAAASHARDKKKADGSDPLEEY 116

Query: 135 CHQHPETDECRIYQD 149
           C  +PET+ECR Y +
Sbjct: 117 CKDNPETNECRTYDN 131
The following BLAST results are available for this feature:
BLAST of Spo23058.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902171827|gb|KNA08050.1|6.6e-67100.hypothetical protein SOVF_1661... [more]
gi|661888802|emb|CDP07245.1|9.1e-2454.2unnamed protein product [Coffe... [more]
gi|698539804|ref|XP_009765560.1|1.2e-2355.3PREDICTED: calvin cycle protei... [more]
gi|697174019|ref|XP_009595948.1|1.5e-2353.9PREDICTED: calvin cycle protei... [more]
gi|604331747|gb|EYU36605.1|4.5e-2366.6hypothetical protein MIMGU_mgv... [more]
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BLAST of Spo23058.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9QLB3_SPIOL4.6e-67100.Uncharacterized protein (Fragm... [more]
A0A068UFC8_COFCA6.3e-2454.2Uncharacterized protein OS=Cof... [more]
A0A022RCH1_ERYGU3.1e-2366.6Uncharacterized protein OS=Ery... [more]
M1ALW9_SOLTU9.1e-2365.0Uncharacterized protein OS=Sol... [more]
A0A0V0HWT8_SOLCH9.1e-2365.0Putative calvin cycle protein ... [more]
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BLAST of Spo23058.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
CP123_ARATH1.4e-2156.3Calvin cycle protein CP12-3, c... [more]
CP121_ARATH5.9e-1553.3Calvin cycle protein CP12-1, c... [more]
CP122_ARATH5.5e-1349.3Calvin cycle protein CP12-2, c... [more]
CP12_CHLRE2.8e-941.3Calvin cycle protein CP12, chl... [more]
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BLAST of Spo23058.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3
Match NameE-valueIdentityDescription
AT1G76560.18.2e-2356.3CP12 domain-containing protein... [more]
AT2G47400.13.3e-1653.3CP12 domain-containing protein... [more]
AT3G62410.13.1e-1449.3CP12 domain-containing protein... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003823Domain of unknown function CP12PFAMPF02672CP12coord: 79..146
score: 2.3
IPR003823Domain of unknown function CP12SMARTSM01093CP12_2coord: 78..148
score: 5.7
NoneNo IPR availableunknownCoilCoilcoord: 72..92
scor
NoneNo IPR availablePANTHERPTHR33921FAMILY NOT NAMEDcoord: 62..148
score: 9.1
NoneNo IPR availablePANTHERPTHR33921:SF3CALVIN CYCLE PROTEIN CP12-3, CHLOROPLASTICcoord: 62..148
score: 9.1

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0071454 cellular response to anoxia
biological_process GO:0015976 carbon utilization
biological_process GO:0010431 seed maturation
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0009832 plant-type cell wall biogenesis
biological_process GO:0016310 phosphorylation
biological_process GO:0006096 glycolytic process
biological_process GO:0006094 gluconeogenesis
biological_process GO:0030243 cellulose metabolic process
biological_process GO:0016049 cell growth
biological_process GO:0007127 meiosis I
biological_process GO:0070417 cellular response to cold
biological_process GO:0008152 metabolic process
biological_process GO:0006468 protein phosphorylation
biological_process GO:0009791 post-embryonic development
biological_process GO:0006570 tyrosine metabolic process
biological_process GO:0009733 response to auxin
biological_process GO:0009737 response to abscisic acid
biological_process GO:0035335 peptidyl-tyrosine dephosphorylation
biological_process GO:0043407 negative regulation of MAP kinase activity
biological_process GO:0016126 sterol biosynthetic process
biological_process GO:0006310 DNA recombination
biological_process GO:0070647 protein modification by small protein conjugation or removal
biological_process GO:0006974 cellular response to DNA damage stimulus
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0010103 stomatal complex morphogenesis
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0019048 modulation by virus of host morphology or physiology
biological_process GO:0042967 obsolete acyl-carrier-protein biosynthetic process
biological_process GO:0009653 anatomical structure morphogenesis
biological_process GO:0051276 chromosome organization
biological_process GO:0003006 developmental process involved in reproduction
biological_process GO:0010228 vegetative to reproductive phase transition of meristem
biological_process GO:0007033 vacuole organization
biological_process GO:0090503 RNA phosphodiester bond hydrolysis, exonucleolytic
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0048193 Golgi vesicle transport
biological_process GO:0007030 Golgi organization
biological_process GO:0000902 cell morphogenesis
biological_process GO:0007059 chromosome segregation
biological_process GO:0009755 hormone-mediated signaling pathway
biological_process GO:0033043 regulation of organelle organization
biological_process GO:0010264 myo-inositol hexakisphosphate biosynthetic process
biological_process GO:0019252 starch biosynthetic process
biological_process GO:0022414 reproductive process
biological_process GO:0010014 meristem initiation
biological_process GO:0006886 intracellular protein transport
biological_process GO:0009855 determination of bilateral symmetry
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0005983 starch catabolic process
biological_process GO:0006470 protein dephosphorylation
biological_process GO:0010075 regulation of meristem growth
biological_process GO:0043085 positive regulation of catalytic activity
biological_process GO:0046838 phosphorylated carbohydrate dephosphorylation
biological_process GO:0000023 maltose metabolic process
biological_process GO:0015991 ATP hydrolysis coupled proton transport
biological_process GO:0009416 response to light stimulus
biological_process GO:0080153 negative regulation of reductive pentose-phosphate cycle
biological_process GO:0034605 cellular response to heat
biological_process GO:0009944 polarity specification of adaxial/abaxial axis
biological_process GO:0006913 nucleocytoplasmic transport
biological_process GO:0007264 small GTPase mediated signal transduction
biological_process GO:0009630 gravitropism
biological_process GO:0048868 pollen tube development
biological_process GO:0009395 phospholipid catabolic process
biological_process GO:0006687 glycosphingolipid metabolic process
biological_process GO:0006651 diacylglycerol biosynthetic process
biological_process GO:0006810 transport
biological_process GO:0016311 dephosphorylation
biological_process GO:0009264 deoxyribonucleotide catabolic process
biological_process GO:0006486 protein glycosylation
biological_process GO:0006816 calcium ion transport
biological_process GO:0016567 protein ubiquitination
biological_process GO:0005975 carbohydrate metabolic process
biological_process GO:0044262 cellular carbohydrate metabolic process
biological_process GO:0044260 cellular macromolecule metabolic process
biological_process GO:0009987 cellular process
biological_process GO:0006950 response to stress
biological_process GO:0006098 pentose-phosphate shunt
cellular_component GO:0005681 spliceosomal complex
cellular_component GO:0009506 plasmodesma
cellular_component GO:0005777 peroxisome
cellular_component GO:0005789 endoplasmic reticulum membrane
cellular_component GO:0033179 proton-transporting V-type ATPase, V0 domain
cellular_component GO:0005768 endosome
cellular_component GO:0005802 trans-Golgi network
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009507 chloroplast
cellular_component GO:0005829 cytosol
cellular_component GO:0032991 protein-containing complex
cellular_component GO:0016020 membrane
cellular_component GO:0005634 nucleus
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005886 plasma membrane
cellular_component GO:0005622 intracellular
molecular_function GO:0050308 sugar-phosphatase activity
molecular_function GO:0016740 transferase activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0003924 GTPase activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0047617 acyl-CoA hydrolase activity
molecular_function GO:2001070 starch binding
molecular_function GO:0008138 protein tyrosine/serine/threonine phosphatase activity
molecular_function GO:0030246 carbohydrate binding
molecular_function GO:0005198 structural molecule activity
molecular_function GO:0016151 nickel cation binding
molecular_function GO:0005507 copper ion binding
molecular_function GO:0015078 proton transmembrane transporter activity
molecular_function GO:0031072 heat shock protein binding
molecular_function GO:0051082 unfolded protein binding
molecular_function GO:0004842 ubiquitin-protein transferase activity
molecular_function GO:0030955 potassium ion binding
molecular_function GO:0008234 cysteine-type peptidase activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0004535 poly(A)-specific ribonuclease activity
molecular_function GO:0008080 N-acetyltransferase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0004743 pyruvate kinase activity
molecular_function GO:0000287 magnesium ion binding
molecular_function GO:0016881 acid-amino acid ligase activity
molecular_function GO:0004672 protein kinase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0004725 protein tyrosine phosphatase activity
molecular_function GO:0008195 phosphatidate phosphatase activity
molecular_function GO:0047874 dolichyldiphosphatase activity
molecular_function GO:0008253 5'-nucleotidase activity
molecular_function GO:0036459 thiol-dependent ubiquitinyl hydrolase activity
molecular_function GO:0016757 transferase activity, transferring glycosyl groups
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo088500.76Barchart | Table
Spo252300.75Barchart | Table
Spo146670.75Barchart | Table
Spo051350.73Barchart | Table
Spo229550.72Barchart | Table
Spo109400.72Barchart | Table
Spo076090.72Barchart | Table
Spo123760.72Barchart | Table
Spo149420.72Barchart | Table
Spo149800.71Barchart | Table
Spo228110.70Barchart | Table
Spo054020.70Barchart | Table
Spo031490.70Barchart | Table
Spo267890.70Barchart | Table
Spo135180.70Barchart | Table
Spo072910.70Barchart | Table
Spo220520.70Barchart | Table
Spo140840.69Barchart | Table
Spo129990.69Barchart | Table
Spo018580.69Barchart | Table
Spo007480.69Barchart | Table
Spo067970.69Barchart | Table
Spo122850.69Barchart | Table
Spo175780.69Barchart | Table
Spo100310.69Barchart | Table
Spo235070.68Barchart | Table
Spo168040.68Barchart | Table
Spo078020.68Barchart | Table
Spo082450.68Barchart | Table
Spo179400.68Barchart | Table
Spo236750.68Barchart | Table
Spo119610.68Barchart | Table
Spo242870.68Barchart | Table
Spo050730.68Barchart | Table
Spo209120.68Barchart | Table
Spo019250.68Barchart | Table
Spo020100.67Barchart | Table
Spo012610.67Barchart | Table
Spo015310.67Barchart | Table
Spo018850.67Barchart | Table
Spo031950.67Barchart | Table
Spo049850.67Barchart | Table
Spo059280.67Barchart | Table
Spo060040.67Barchart | Table
Spo093440.67Barchart | Table
Spo100110.67Barchart | Table
Spo127190.67Barchart | Table
Spo148260.67Barchart | Table
Spo185780.67Barchart | Table
Spo186940.67Barchart | Table
Spo282650.67Barchart | Table
Spo223960.66Barchart | Table
Spo158730.66Barchart | Table
Spo040820.66Barchart | Table
Spo029320.66Barchart | Table
Spo083390.66Barchart | Table
Spo004980.66Barchart | Table
Spo145370.66Barchart | Table
Spo168010.66Barchart | Table
Spo116600.66Barchart | Table
Spo096050.66Barchart | Table
Spo194450.66Barchart | Table
Spo061640.66Barchart | Table
Spo216000.66Barchart | Table
Spo104440.66Barchart | Table
Spo018410.65Barchart | Table
Spo172090.65Barchart | Table
Spo089700.65Barchart | Table
Spo259450.65Barchart | Table
Spo017060.65Barchart | Table
Spo061480.65Barchart | Table
Spo050930.65Barchart | Table
Spo020650.65Barchart | Table
Spo146610.65Barchart | Table
Spo114420.65Barchart | Table