Spo00083 (gene) | SpinachBase

Overview


Name	Spo00083
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	RNA binding protein-like protein
Location	Super_scaffold_70 : 671610 .. 675672 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAATCGCCAAAATTGACTTGGGGGAGCTCAAAATTCCCTATAAAGAATAAAGGAAGGAAAAAGAACAGAGCATTTCACTGATAGAGGGATAAAGAAGCGAAGAACTGAAGCAACATTTTTGTACCCATTCATCTCTATCGACTTGAAGTTAATCTCCAAGTGTTTTCAGGTACATTTTGCTAAATTGTCGAATATGTATGTGTAATGTGATCTCTAATTCACCAGTTTTTTGACTAAATTTGTTATTTAAAAAGTAAACTATGTTAAAAAAATTGGATGTAATTATCGCATTACTGCAGAAATTTGATGGAAAACCCTATAATTTAATCTGTTTAATGGGTATATATGTTTGAACTTTGAAGTATCAATTTTGGGGGTTTGTATTAGCTTCAGATGGATAATGCCTGCCACATGTTCGATGAAATGTCCTGCAGAAGTTATTTCGTTACTTTTTATTTTCGTCCTCCTATCTCTCTACTTTGATAGTTTGATCATGTTATAACGTTCTGCGGTGTTTGTGGGTAATTAAAATTGTGAACGACCACATGAGATGAATTCTTGGTTCATGGAGCCGACCCCATGCTTTTGGGATTAAGGTTTCGACATATAAGACATTGTTGTTGCTGTGGGTAGTTTGAACGGGTTCATTTCATAAATCAGAAGTCGTATTTATATTTCGTGATTTTTGGAATCACAGGGGAAAACCTGTGTTATCATGCTGTCCGTTAACCACTTAACCTGCTGATTCGTGCTGGTGTGCTGCCATTTTTATAATTAAGTATGACAAAAAAATCTCAATATCATGTGTTACTTGAATTTGGATGAAGATTCACTGATCAACTGAGTTTTAAAGTAAGAATATGTATGGAATTTGAAGAGCAAACAATGCTAACACCAAGTTTCTTGCTTTTTATGTGCATCGGTATTGTGCAAATAATGCTACTGAATTAAGGCTCTTTTATCCAGACTTGGCCATAGTTCGAGGCTCTAAGCTTGAGACTTCCGCCACCTCTTTACTGGAATATAACGTTGTAGTAGACGAATTGCATCTCTTCTCCCATTCCCCCTTCCTGCTTCTCTCTTTGGCCTAAGAATTATCTTTATATCGATAAATTATCAATATTTTCGAGGTCCAAGGAAGTGGTAAATGACACATTCTACAAGCAGTCTAGATAAGTTCTAACTTCTAGGACAGATCTTACTATAATTGCGTTGTATAAACACTAATGTGCCTGAGTAGAAGAAGCGAATACATTTCTAGCTTACTTAGAGGTTTGAGAAAGAGAGCAATTAAACCGGATTGGTAAAATGCACTACAAAGAGGTTAGTTTGTCTTGTTTTCTTGTTTCTTTAAGTTTGTGAGTTATGAAACATAGGGTTGAAGTTCCGGCTAGTTGACAAGTTTGTATAATGTGGAGCCATCTCATGGGAATATTGTGACTACCAAAGTAGTGCTCTCTTCTCCTCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCCCTGCAGGTATTTGCTTGTTTTGCCTTGATTTTTGTGTATCATGATTCTTAAAAGTTTTCTCTTAGGTTTTGTGCTTATAATTTCAATTCAGTCTGCTGAAACCCTGTTTGGTTTTATAAGGTCGCTCATAGATGTTGCATCTGTCCAAGATAGAGCCAGCACATCAAATTCTAAATTCTGTAATCGTTTTTGAAATTGCTGTTGGGCCTATTAAACTCACCCAGGGATTTTGAATATTTTGCTCCTGTGGGCTCTAGTCTTTACTTGTATTTTTCCCTTGGCAAATGGCAATCAACCATATTGTTTTTGGACGCTTGATGCTTTATACCTCGACCCATGTTACTGTTTACTGTGTAGTAGTTGGTAATAAGTGATAGTGAAAATTAGAAGGAAAAGGCCTACTTGGTGATCGATATGCATTCATATTGGCAGTCGCATTGCATGTTCTACGTAAAAGCAATTATGAAGTTGTTATCATTCCATTACTTCATGGCTTTGTTTAAAACTAGTTGTGAAAGTAGGAATATAAAAATAGCAGCCACGATTCACAAAGTTCTAGAATTTTGGCAAAGCTCTCATCATGCATGACAGGGACATTTGCAGTAATAATTTCATCAAATGACCTGATGTCTGTCTTTTCAGTGTTATCTTTCCTCAGAGTTCTTTCTGGATCGAGGATGGTTTGGCTATAGTCATGCCGTCCTTTCGTTGACTTGTGATTTCATTTTTATAGCCTCTCTTGCAAATTATGTTGCACATTCTGCAATTTATGTTCACTGTTCAGTCTGCCTGACAATACAAGTCCTTTATTTCATTTGACAGTGAGTTGAAGAACACAGCTCCATCTCTCCCTATTATTCTATTCTAAGCAGAATAATGTTGAACAGAGTGCTTTGTTGCAAGTGTATAACCTACCCATCTGCAATGTGTCAGGTTGCTCGGTATGCTTGCACAAACTTGTTTGTTGGAGGTAATCTCAATGCTTCTCTGTCTGTTTGATCTATCCCGATTCCCACCTCTCTTTTCTGAAGTCATTTGCATGCAATTGCTTAACCAAATATTTATTTACTAATTTTGAAATCCCACTCCTTGTTTAGCTTTACGTCAATCTTCTCCACATAAAACGTGAATCATACCATGCTTGGATGGCTTTTAATTCCAGTAATCTCTTTTTCTTCGTAGATTTCTTGCTGACTCATCATATTTCAATCAATTTCTTCCTCTGTGATTAGGACTTTCTTATGATACAAATGAAACTGTATTACGAGATGCTTTCTCGCAGCATGGTGAAATTACTGAAGGTAATATTTACTTGTACTGAATAGTCCTGTTGAAGGCTTGAATATTCTTCTACTTATTTTTTTTAAAGCTGATTGATGAATCTGTCTTTTATAGTTAGAGTTATCTGTCACCATGTCTCTGGAAAATCAAGAGGGTATGGATTTGTGAAGTTTAGTTGTGAAAATAGTGCTGCATCAGCACTTAAAGAAATGGATGGCCAGGTTAGTGAATAGTGTCCAGTGGCTGACATCAATTTCGCACATGTAGCAACTGAACATGGTGAACGTGAAGCTATCACTTAAACCCGTATTTTATGCAACCAAACAGGTAGTGGATGGGAGGAATATCCGTATTCATCAGGCTCACAAGCAATGATGATGAATTTGTTCAGTTTTCGGGGTTGAATCATTGTTGCCTATGTAAATGAAGTGGTTTTAGTTTTACTGATGGAATACAATACAATGTTTCCAGATATATGTGGAACATGAGCTTATTTGATGATCTGGAGCAAGAAATTGGAGGTGATTATGTTTGTTGGCAGCTGTGACATAACAAGGGTACATCTTCTTTGTTTGGGTGGTAAGCAAGCTATGGGATCAATGAGGAAAACCTCCCCGTGCAATATCTTTTCAGTTGATCCTCTGTGTCTGTGATAATATTTACTTGGAGTTGTAATTTCCGTTGTTTCTCTTGGTCATGCATTAAGACTGGAGTCGTTTGTAATCTATAAACGTGAAATTCTCTGGTTACATCTATTTGAGTAATGTAATCCATGAAGCAGGCAGGAGCTAAAATGCTGGTTTACAATTAATCGTGTGATTGGTTAATGATTAGGTAAACAATAACAAAACCCTGCTGTAAATCTGTGATGCTAGACGGGGATATTGCTCCACCCATGACCATAGCTAGACCTGTCAAAACTGATCCAGACCTGAAAAATTGACTCGATTGATCCGATCTGTAACCCAAATTGGTTTGAAACGACGATCTGAAATTAACCCGAAAATCAAATACACCCGACCTAAAATCGAAACTGATCCGAAAGTGATTTGACCTGTATTGACCTGATACCCGAACGGCCTGAACCGAAGTACCCGAAACCGAATTAACCCGAACTGATCTTCACCCGACACCACATTAACCCGAATCGAAAATAACTGAAAAATTTAAATTAAC

mRNA sequence

TAATCGCCAAAATTGACTTGGGGGAGCTCAAAATTCCCTATAAAGAATAAAGGAAGGAAAAAGAACAGAGCATTTCACTGATAGAGGGATAAAGAAGCGAAGAACTGAAGCAACATTTTTGTACCCATTCATCTCTATCGACTTGAAGTTAATCTCCAAGTGTTTTCAGTGAGTTGAAGAACACAGCTCCATCTCTCCCTATTATTCTATTCTAAGCAGAATAATGTTGAACAGAGTGCTTTGTTGCAAGTGTATAACCTACCCATCTGCAATGTGTCAGGTTGCTCGGTATGCTTGCACAAACTTGTTTGTTGGAGGACTTTCTTATGATACAAATGAAACTGTATTACGAGATGCTTTCTCGCAGCATGGTGAAATTACTGAAGTTAGAGTTATCTGTCACCATGTCTCTGGAAAATCAAGAGGGTATGGATTTGTGAAGTTTAGTTGTGAAAATAGTGCTGCATCAGCACTTAAAGAAATGGATGGCCAGGTAGTGGATGGGAGGAATATCCGTATTCATCAGGCTCACAAGCAATGATGATGAATTTGTTCAGTTTTCGGGGTTGAATCATTGTTGCCTATGTAAATGAAGTGGTTTTAGTTTTACTGATGGAATACAATACAATGTTTCCAGATATATGTGGAACATGAGCTTATTTGATGATCTGGAGCAAGAAATTGGAGGTGATTATGTTTGTTGGCAGCTGTGACATAACAAGGGTACATCTTCTTTGTTTGGGTGGTAAGCAAGCTATGGGATCAATGAGGAAAACCTCCCCGTGCAATATCTTTTCAGTTGATCCTCTGTGTCTGTGATAATATTTACTTGGAGTTGTAATTTCCGTTGTTTCTCTTGGTCATGCATTAAGACTGGAGTCGTTTGTAATCTATAAACGTGAAATTCTCTGGTTACATCTATTTGAGTAATGTAATCCATGAAGCAGGCAGGAGCTAAAATGCTGGTTTACAATTAATCGTGTGATTGGTTAATGATTAGGTAAACAATAACAAAACCCTGCTGTAAATCTGTGATGCTAGACGGGGATATTGCTCCACCCATGACCATAGCTAGACCTGTCAAAACTGATCCAGACCTGAAAAATTGACTCGATTGATCCGATCTGTAACCCAAATTGGTTTGAAACGACGATCTGAAATTAACCCGAAAATCAAATACACCCGACCTAAAATCGAAACTGATCCGAAAGTGATTTGACCTGTATTGACCTGATACCCGAACGGCCTGAACCGAAGTACCCGAAACCGAATTAACCCGAACTGATCTTCACCCGACACCACATTAACCCGAATCGAAAATAACTGAAAAATTTAAATTAAC

Coding sequence (CDS)

ATGTTGAACAGAGTGCTTTGTTGCAAGTGTATAACCTACCCATCTGCAATGTGTCAGGTTGCTCGGTATGCTTGCACAAACTTGTTTGTTGGAGGACTTTCTTATGATACAAATGAAACTGTATTACGAGATGCTTTCTCGCAGCATGGTGAAATTACTGAAGTTAGAGTTATCTGTCACCATGTCTCTGGAAAATCAAGAGGGTATGGATTTGTGAAGTTTAGTTGTGAAAATAGTGCTGCATCAGCACTTAAAGAAATGGATGGCCAGGTAGTGGATGGGAGGAATATCCGTATTCATCAGGCTCACAAGCAATGA

Protein sequence

MLNRVLCCKCITYPSAMCQVARYACTNLFVGGLSYDTNETVLRDAFSQHGEITEVRVICHHVSGKSRGYGFVKFSCENSAASALKEMDGQVVDGRNIRIHQAHKQ

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo00083.1	Spo00083.1	mRNA

Homology

[Close]

BLAST of Spo00083.1 vs. NCBI nr
Match: gi|902233047|gb|KNA22908.1| (hypothetical protein SOVF_029930 [Spinacia oleracea])

HSP 1 Score: 219.5 bits (558), Expect = 2.700e-54
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1

		  
Query: 1   MLNRVLCCKCITYPSAMCQVARYACTNLFVGGLSYDTNETVLRDAFSQHGEITEVRVICH 60
           MLNRVLCCKCITYPSAMCQVARYACTNLFVGGLSYDTNETVLRDAFSQHGEITEVRVICH
Sbjct: 1   MLNRVLCCKCITYPSAMCQVARYACTNLFVGGLSYDTNETVLRDAFSQHGEITEVRVICH 60

Query: 61  HVSGKSRGYGFVKFSCENSAASALKEMDGQVVDGRNIRIHQAHKQ 106
           HVSGKSRGYGFVKFSCENSAASALKEMDGQVVDGRNIRIHQAHKQ
Sbjct: 61  HVSGKSRGYGFVKFSCENSAASALKEMDGQVVDGRNIRIHQAHKQ 105

[Close]

BLAST of Spo00083.1 vs. NCBI nr
Match: gi|731349086|ref|XP_010685816.1| (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like isoform X1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 156.4 bits (394), Expect = 2.800e-35
Identity = 75/105 (71.43%), Postives = 90/105 (85.71%), Query Frame = 1

		  
Query: 1   MLNRVLCCKCITYPSAMCQVARYACTNLFVGGLSYDTNETVLRDAFSQHGEITEVRVICH 60
           MLNRVL  + I +  AM Q+ R ACT LFVGGLSY+TNETVLRDAF++HGEI EVRVICH
Sbjct: 2   MLNRVLYRRHIAFAPAMLQLVRNACTELFVGGLSYETNETVLRDAFTRHGEIIEVRVICH 61

Query: 61  HVSGKSRGYGFVKFSCENSAASALKEMDGQVVDGRNIRIHQAHKQ 106
           HV+GKS+GYGFVKF+ E+  +SALKEMDGQV+DGR+IR++ AHKQ
Sbjct: 62  HVTGKSKGYGFVKFASEDGVSSALKEMDGQVLDGRSIRVYHAHKQ 106

[Close]

BLAST of Spo00083.1 vs. NCBI nr
Match: gi|731349088|ref|XP_010685817.1| (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like isoform X2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 136.0 bits (341), Expect = 3.900e-29
Identity = 69/105 (65.71%), Postives = 84/105 (80.00%), Query Frame = 1

		  
Query: 1   MLNRVLCCKCITYPSAMCQVARYACTNLFVGGLSYDTNETVLRDAFSQHGEITEVRVICH 60
           MLNRVL  + I +  AM Q+    C  L   GLSY+TNETVLRDAF++HGEI EVRVICH
Sbjct: 2   MLNRVLYRRHIAFAPAMLQLVSIVCF-LCDLGLSYETNETVLRDAFTRHGEIIEVRVICH 61

Query: 61  HVSGKSRGYGFVKFSCENSAASALKEMDGQVVDGRNIRIHQAHKQ 106
           HV+GKS+GYGFVKF+ E+  +SALKEMDGQV+DGR+IR++ AHKQ
Sbjct: 62  HVTGKSKGYGFVKFASEDGVSSALKEMDGQVLDGRSIRVYHAHKQ 105

[Close]

BLAST of Spo00083.1 vs. NCBI nr
Match: gi|590589608|ref|XP_007016499.1| (Glycine-rich RNA-binding protein 2 [Theobroma cacao])

HSP 1 Score: 135.2 bits (339), Expect = 6.700e-29
Identity = 65/93 (69.89%), Postives = 75/93 (80.65%), Query Frame = 1

		  
Query: 12  TYPSAMCQVARYACTNLFVGGLSYDTNETVLRDAFSQHGEITEVRVICHHVSGKSRGYGF 71
           T P A     R +C+ LFVGGLSYDTNETVL+DAF +HGEI EVRVICHHVSGKSRGYGF
Sbjct: 13  TIPLAGSLSVRNSCSKLFVGGLSYDTNETVLKDAFEKHGEIIEVRVICHHVSGKSRGYGF 72

Query: 72  VKFSCENSAASALKEMDGQVVDGRNIRIHQAHK 105
           V+F+ E +A +ALKEM  QV+DGRNIR+  AHK
Sbjct: 73  VRFASEAAANAALKEMHSQVLDGRNIRVEYAHK 105

[Close]

BLAST of Spo00083.1 vs. NCBI nr
Match: gi|802553457|ref|XP_012064991.1| (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like [Jatropha curcas])

HSP 1 Score: 133.7 bits (335), Expect = 1.900e-28
Identity = 63/102 (61.76%), Postives = 80/102 (78.43%), Query Frame = 1

		  
Query: 3   NRVLCCKCITYPSAMCQVARYACTNLFVGGLSYDTNETVLRDAFSQHGEITEVRVICHHV 62
           NR       T P A     R++C  LFVGGLSYDTNETVL++AF +HGEI EV++IC HV
Sbjct: 5   NRAAVSISSTVPLARWLWVRHSCNKLFVGGLSYDTNETVLKNAFEKHGEIIEVKIICDHV 64

Query: 63  SGKSRGYGFVKFSCENSAASALKEMDGQVVDGRNIRIHQAHK 105
           SGKS+GYGFV+FSCE++A+ ALKEM+GQ++D RNIR++ AHK
Sbjct: 65  SGKSKGYGFVQFSCESAASIALKEMNGQLLDDRNIRVYYAHK 106

[Close]

BLAST of Spo00083.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RTX8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_029930 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 1.900e-54
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1

		  
Query: 1   MLNRVLCCKCITYPSAMCQVARYACTNLFVGGLSYDTNETVLRDAFSQHGEITEVRVICH 60
           MLNRVLCCKCITYPSAMCQVARYACTNLFVGGLSYDTNETVLRDAFSQHGEITEVRVICH
Sbjct: 1   MLNRVLCCKCITYPSAMCQVARYACTNLFVGGLSYDTNETVLRDAFSQHGEITEVRVICH 60

Query: 61  HVSGKSRGYGFVKFSCENSAASALKEMDGQVVDGRNIRIHQAHKQ 106
           HVSGKSRGYGFVKFSCENSAASALKEMDGQVVDGRNIRIHQAHKQ
Sbjct: 61  HVSGKSRGYGFVKFSCENSAASALKEMDGQVVDGRNIRIHQAHKQ 105

[Close]

BLAST of Spo00083.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BVZ3_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g174380 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 1.900e-35
Identity = 75/105 (71.43%), Postives = 90/105 (85.71%), Query Frame = 1

		  
Query: 1   MLNRVLCCKCITYPSAMCQVARYACTNLFVGGLSYDTNETVLRDAFSQHGEITEVRVICH 60
           MLNRVL  + I +  AM Q+ R ACT LFVGGLSY+TNETVLRDAF++HGEI EVRVICH
Sbjct: 2   MLNRVLYRRHIAFAPAMLQLVRNACTELFVGGLSYETNETVLRDAFTRHGEIIEVRVICH 61

Query: 61  HVSGKSRGYGFVKFSCENSAASALKEMDGQVVDGRNIRIHQAHKQ 106
           HV+GKS+GYGFVKF+ E+  +SALKEMDGQV+DGR+IR++ AHKQ
Sbjct: 62  HVTGKSKGYGFVKFASEDGVSSALKEMDGQVLDGRSIRVYHAHKQ 106

[Close]

BLAST of Spo00083.1 vs. UniProtKB/TrEMBL
Match: A0A0J8EQK7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g174380 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 2.700e-29
Identity = 69/105 (65.71%), Postives = 84/105 (80.00%), Query Frame = 1

		  
Query: 1   MLNRVLCCKCITYPSAMCQVARYACTNLFVGGLSYDTNETVLRDAFSQHGEITEVRVICH 60
           MLNRVL  + I +  AM Q+    C  L   GLSY+TNETVLRDAF++HGEI EVRVICH
Sbjct: 2   MLNRVLYRRHIAFAPAMLQLVSIVCF-LCDLGLSYETNETVLRDAFTRHGEIIEVRVICH 61

Query: 61  HVSGKSRGYGFVKFSCENSAASALKEMDGQVVDGRNIRIHQAHKQ 106
           HV+GKS+GYGFVKF+ E+  +SALKEMDGQV+DGR+IR++ AHKQ
Sbjct: 62  HVTGKSKGYGFVKFASEDGVSSALKEMDGQVLDGRSIRVYHAHKQ 105

[Close]

BLAST of Spo00083.1 vs. UniProtKB/TrEMBL
Match: A0A061GXH4_THECC (Glycine-rich RNA-binding protein 2 OS=Theobroma cacao GN=TCM_041891 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 4.600e-29
Identity = 65/93 (69.89%), Postives = 75/93 (80.65%), Query Frame = 1

		  
Query: 12  TYPSAMCQVARYACTNLFVGGLSYDTNETVLRDAFSQHGEITEVRVICHHVSGKSRGYGF 71
           T P A     R +C+ LFVGGLSYDTNETVL+DAF +HGEI EVRVICHHVSGKSRGYGF
Sbjct: 13  TIPLAGSLSVRNSCSKLFVGGLSYDTNETVLKDAFEKHGEIIEVRVICHHVSGKSRGYGF 72

Query: 72  VKFSCENSAASALKEMDGQVVDGRNIRIHQAHK 105
           V+F+ E +A +ALKEM  QV+DGRNIR+  AHK
Sbjct: 73  VRFASEAAANAALKEMHSQVLDGRNIRVEYAHK 105

[Close]

BLAST of Spo00083.1 vs. UniProtKB/TrEMBL
Match: A0A067L730_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05669 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.300e-28
Identity = 63/102 (61.76%), Postives = 80/102 (78.43%), Query Frame = 1

		  
Query: 3   NRVLCCKCITYPSAMCQVARYACTNLFVGGLSYDTNETVLRDAFSQHGEITEVRVICHHV 62
           NR       T P A     R++C  LFVGGLSYDTNETVL++AF +HGEI EV++IC HV
Sbjct: 5   NRAAVSISSTVPLARWLWVRHSCNKLFVGGLSYDTNETVLKNAFEKHGEIIEVKIICDHV 64

Query: 63  SGKSRGYGFVKFSCENSAASALKEMDGQVVDGRNIRIHQAHK 105
           SGKS+GYGFV+FSCE++A+ ALKEM+GQ++D RNIR++ AHK
Sbjct: 65  SGKSKGYGFVQFSCESAASIALKEMNGQLLDDRNIRVYYAHK 106

[Close]

BLAST of Spo00083.1 vs. ExPASy Swiss-Prot
Match: RBG4_ARATH (Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana GN=RBG4 PE=2 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 6.200e-19
Identity = 44/88 (50.00%), Postives = 65/88 (73.86%), Query Frame = 1

		  
Query: 15  SAMCQVARYACTNLFVGGLSYDTNETVLRDAFSQHGEITEVRVICHHVSGKSRGYGFVKF 74
           ++M    RY  + LFVGGLS+ T+++ L+ AF+  GE+TE  VI    +G+SRG+GFV F
Sbjct: 24  TSMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSF 83

Query: 75  SCENSAASALKEMDGQVVDGRNIRIHQA 103
           SCE+SA +A+KEMDG+ ++GR IR++ A
Sbjct: 84  SCEDSANNAIKEMDGKELNGRQIRVNLA 111

[Close]

BLAST of Spo00083.1 vs. ExPASy Swiss-Prot
Match: RBG2_ARATH (Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana GN=RBG2 PE=1 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 4.900e-16
Identity = 38/89 (42.70%), Postives = 63/89 (70.79%), Query Frame = 1

		  
Query: 15  SAMCQVARYACTNLFVGGLSYDTNETVLRDAFSQHGEITEVRVICHHVSGKSRGYGFVKF 74
           ++M    R   T LF+GGLS+ T++  LRDAF+  G++ + +VI    +G+SRG+GFV F
Sbjct: 24  TSMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNF 83

Query: 75  SCENSAASALKEMDGQVVDGRNIRIHQAH 104
           + E +A +A+ EMDG+ ++GR+IR++ A+
Sbjct: 84  NDEGAATAAISEMDGKELNGRHIRVNPAN 112

[Close]

BLAST of Spo00083.1 vs. ExPASy Swiss-Prot
Match: RT19_ARATH (40S ribosomal protein S19, mitochondrial OS=Arabidopsis thaliana GN=RPS19 PE=1 SV=2)

HSP 1 Score: 84.7 bits (208), Expect = 6.500e-16
Identity = 43/88 (48.86%), Postives = 60/88 (68.18%), Query Frame = 1

		  
Query: 15  SAMCQVARYACTNLFVGGLSYDTNETVLRDAFSQHGEITEVRVICHHVSGKSRGYGFVKF 74
           S+M    RY  T L++GGLS  T+E  L+DAFS    +TE RV+ + V+G+SRGYGFV F
Sbjct: 20  SSMLGSLRYMSTKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNF 79

Query: 75  SCENSAASALKEMDGQVVDGRNIRIHQA 103
             E+SA SA+  M+GQ ++G NI ++ A
Sbjct: 80  ISEDSANSAISAMNGQELNGFNISVNVA 107

[Close]

BLAST of Spo00083.1 vs. ExPASy Swiss-Prot
Match: CIRBP_MOUSE (Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 3.500e-14
Identity = 39/77 (50.65%), Postives = 53/77 (68.83%), Query Frame = 1

		  
Query: 28  LFVGGLSYDTNETVLRDAFSQHGEITEVRVICHHVSGKSRGYGFVKFSCENSAASALKEM 87
           LFVGGLS+DTNE  L   FS++G+I+EV V+    + +SRG+GFV F   + A  A+  M
Sbjct: 8   LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67

Query: 88  DGQVVDGRNIRIHQAHK 105
           +G+ VDGR IR+ QA K
Sbjct: 68  NGKSVDGRQIRVDQAGK 84

[Close]

BLAST of Spo00083.1 vs. ExPASy Swiss-Prot
Match: CIRBP_CRIGR (Cold-inducible RNA-binding protein OS=Cricetulus griseus GN=CIRBP PE=2 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 3.500e-14
Identity = 39/77 (50.65%), Postives = 53/77 (68.83%), Query Frame = 1

		  
Query: 28  LFVGGLSYDTNETVLRDAFSQHGEITEVRVICHHVSGKSRGYGFVKFSCENSAASALKEM 87
           LFVGGLS+DTNE  L   FS++G+I+EV V+    + +SRG+GFV F   + A  A+  M
Sbjct: 8   LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67

Query: 88  DGQVVDGRNIRIHQAHK 105
           +G+ VDGR IR+ QA K
Sbjct: 68  NGKSVDGRQIRVDQAGK 84

[Close]

BLAST of Spo00083.1 vs. TAIR (Arabidopsis)
Match: AT3G23830.1 (glycine-rich RNA-binding protein 4)

HSP 1 Score: 94.7 bits (234), Expect = 3.500e-20
Identity = 44/88 (50.00%), Postives = 65/88 (73.86%), Query Frame = 1

		  
Query: 15  SAMCQVARYACTNLFVGGLSYDTNETVLRDAFSQHGEITEVRVICHHVSGKSRGYGFVKF 74
           ++M    RY  + LFVGGLS+ T+++ L+ AF+  GE+TE  VI    +G+SRG+GFV F
Sbjct: 24  TSMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSF 83

Query: 75  SCENSAASALKEMDGQVVDGRNIRIHQA 103
           SCE+SA +A+KEMDG+ ++GR IR++ A
Sbjct: 84  SCEDSANNAIKEMDGKELNGRQIRVNLA 111

[Close]

BLAST of Spo00083.1 vs. TAIR (Arabidopsis)
Match: AT4G13850.1 (glycine-rich RNA-binding protein 2)

HSP 1 Score: 85.1 bits (209), Expect = 2.800e-17
Identity = 38/89 (42.70%), Postives = 63/89 (70.79%), Query Frame = 1

		  
Query: 15  SAMCQVARYACTNLFVGGLSYDTNETVLRDAFSQHGEITEVRVICHHVSGKSRGYGFVKF 74
           ++M    R   T LF+GGLS+ T++  LRDAF+  G++ + +VI    +G+SRG+GFV F
Sbjct: 24  TSMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNF 83

Query: 75  SCENSAASALKEMDGQVVDGRNIRIHQAH 104
           + E +A +A+ EMDG+ ++GR+IR++ A+
Sbjct: 84  NDEGAATAAISEMDGKELNGRHIRVNPAN 112

[Close]

BLAST of Spo00083.1 vs. TAIR (Arabidopsis)
Match: AT5G47320.1 (ribosomal protein S19)

HSP 1 Score: 84.7 bits (208), Expect = 3.600e-17
Identity = 43/88 (48.86%), Postives = 60/88 (68.18%), Query Frame = 1

		  
Query: 15  SAMCQVARYACTNLFVGGLSYDTNETVLRDAFSQHGEITEVRVICHHVSGKSRGYGFVKF 74
           S+M    RY  T L++GGLS  T+E  L+DAFS    +TE RV+ + V+G+SRGYGFV F
Sbjct: 20  SSMLGSLRYMSTKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNF 79

Query: 75  SCENSAASALKEMDGQVVDGRNIRIHQA 103
             E+SA SA+  M+GQ ++G NI ++ A
Sbjct: 80  ISEDSANSAISAMNGQELNGFNISVNVA 107

[Close]

BLAST of Spo00083.1 vs. TAIR (Arabidopsis)
Match: AT5G61030.1 (glycine-rich RNA-binding protein 3)

HSP 1 Score: 78.2 bits (191), Expect = 3.400e-15
Identity = 33/93 (35.48%), Postives = 64/93 (68.82%), Query Frame = 1

		  
Query: 11  ITYPSAMCQVARYACTNLFVGGLSYDTNETVLRDAFSQHGEITEVRVICHHVSGKSRGYG 70
           ++ PS    +   + + LF+GG++Y  +E  LR+AF+++GE+ + RVI    +G+SRG+G
Sbjct: 25  LSSPSLFQAIRCMSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFG 84

Query: 71  FVKFSCENSAASALKEMDGQVVDGRNIRIHQAH 104
           FV F+   +A+SA++ +DG+ + GR ++++ A+
Sbjct: 85  FVTFTSSEAASSAIQALDGRDLHGRVVKVNYAN 117

[Close]

BLAST of Spo00083.1 vs. TAIR (Arabidopsis)
Match: AT1G74230.1 (glycine-rich RNA-binding protein 5)

HSP 1 Score: 77.4 bits (189), Expect = 5.800e-15
Identity = 38/93 (40.86%), Postives = 64/93 (68.82%), Query Frame = 1

		  
Query: 11  ITYPSAMCQVAR-YACTNLFVGGLSYDTNETVLRDAFSQHGEITEVRVICHHVSGKSRGY 70
           +T  S+M Q  R  + + +FVGG+SY T+E  LR+AFS++GE+ + ++I    +G+SRG+
Sbjct: 18  VTASSSMLQSIRCMSSSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGF 77

Query: 71  GFVKFSCENSAASALKEMDGQVVDGRNIRIHQA 103
            FV F+    A++A+ ++DGQ + GR IR++ A
Sbjct: 78  AFVTFTSTEEASNAM-QLDGQDLHGRRIRVNYA 109

The following BLAST results are available for this feature:

BLAST of Spo00083.1 vs. NCBI nr
BLAST of Spo00083.1 vs. UniProtKB/TrEMBL
BLAST of Spo00083.1 vs. ExPASy Swiss-Prot
BLAST of Spo00083.1 vs. TAIR (Arabidopsis)

BLAST of Spo00083.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
gi\|902233047\|gb\|KNA22908.1\|	2.7e-54	100.	hypothetical protein SOVF_0299...	[more]
gi\|731349086\|ref\|XP_010685816.1\|	2.8e-35	71.4	PREDICTED: glycine-rich RNA-bi...	[more]
gi\|731349088\|ref\|XP_010685817.1\|	3.9e-29	65.7	PREDICTED: glycine-rich RNA-bi...	[more]
gi\|590589608\|ref\|XP_007016499.1\|	6.7e-29	69.8	Glycine-rich RNA-binding prote...	[more]
gi\|802553457\|ref\|XP_012064991.1\|	1.9e-28	61.7	PREDICTED: glycine-rich RNA-bi...	[more]

BLAST of Spo00083.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
A0A0K9RTX8_SPIOL	1.9e-54	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8BVZ3_BETVU	1.9e-35	71.4	Uncharacterized protein OS=Bet...	[more]
A0A0J8EQK7_BETVU	2.7e-29	65.7	Uncharacterized protein OS=Bet...	[more]
A0A061GXH4_THECC	4.6e-29	69.8	Glycine-rich RNA-binding prote...	[more]
A0A067L730_JATCU	1.3e-28	61.7	Uncharacterized protein OS=Jat...	[more]

BLAST of Spo00083.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
RBG4_ARATH	6.2e-19	50.0	Glycine-rich RNA-binding prote...	[more]
RBG2_ARATH	4.9e-16	42.7	Glycine-rich RNA-binding prote...	[more]
RT19_ARATH	6.5e-16	48.8	40S ribosomal protein S19, mit...	[more]
CIRBP_MOUSE	3.5e-14	50.6	Cold-inducible RNA-binding pro...	[more]
CIRBP_CRIGR	3.5e-14	50.6	Cold-inducible RNA-binding pro...	[more]

BLAST of Spo00083.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
AT3G23830.1	3.5e-20	50.0	glycine-rich RNA-binding prote...	[more]
AT4G13850.1	2.8e-17	42.7	glycine-rich RNA-binding prote...	[more]
AT5G47320.1	3.6e-17	48.8	ribosomal protein S19	[more]
AT5G61030.1	3.4e-15	35.4	glycine-rich RNA-binding prote...	[more]
AT1G74230.1	5.8e-15	40.8	glycine-rich RNA-binding prote...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 28..98 score: 3.5
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 27..100 score: 2.5
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 26..104 score: 19
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	3.30.70.330		coord: 25..103 score: 1.4
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 12..103 score: 1.17
None	No IPR available	PANTHER	PTHR24012	FAMILY NOT NAMED	coord: 26..99 score: 1.0

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo08849	0.70	Barchart \| Table
Spo15689	0.70	Barchart \| Table
Spo21722	0.70	Barchart \| Table
Spo13241	0.69	Barchart \| Table
Spo12610	0.69	Barchart \| Table
Spo20515	0.68	Barchart \| Table
Spo18480	0.68	Barchart \| Table
Spo24872	0.67	Barchart \| Table
Spo21959	0.67	Barchart \| Table
Spo10856	0.67	Barchart \| Table
Spo26452	0.66	Barchart \| Table
Spo09155	0.66	Barchart \| Table
Spo11180	0.66	Barchart \| Table
Spo17513	0.66	Barchart \| Table
Spo18479	0.66	Barchart \| Table
Spo20101	0.66	Barchart \| Table
Spo25749	0.66	Barchart \| Table
Spo07734	0.66	Barchart \| Table
Spo08335	0.65	Barchart \| Table
Spo25123	0.65	Barchart \| Table
Spo26008	0.65	Barchart \| Table
Spo19499	0.65	Barchart \| Table
Spo22525	0.65	Barchart \| Table