Spo20870.1 (mRNA) | SpinachBase

Overview


Name	Spo20870.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	E3 ubiquitin-protein ligase RMA1H1 (6.3.2.-) (Protein RING membrane-anchor 1 homolog 1)
Location	SpoScf_02291 : 65580 .. 70673 (+)
Sequence length	1407

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ACAAAAAAATAAGATTAGGATAAACCCTCAAAATTGTATAATAGTCGATTAACAACAAATTGAACCCTAATGTGGTTGGTGGAATGTACCAAAATAAAAGAAAAATGATGCCCCCATTTTTGATGGCCAAAACTTCCACGCAGCTTCTTAATTATGGAGTCTGTAGGTGGGTTTACGCGGTAATAACGGTGCCCATTTAGATTCTCCCTTTCTATCTCTTACCTTTTATCATATCTCCAATTTTCTCTCTCCTCATTTCTCTTATTTCAGATATTTTCTTCTGCCCCAGCTCGAACTCAATTCCCAGATTATTAGAGGTACATCTACTTCTTTAATTTTGCCTTTAATGTTATTTATTAAATTTCCAGTCATTTTTTGAAGCATTTTACTATTATCTATGTTGTTTATAAGTGATTTCCTATCTAGGGTTTTTGTAATGGTTGTTATTTCTGCATTACCCATTTGATGATTTGTTTTATGCTTGATGGGTTTTTATTTTAAAGTGGATAACAGAAGGTTGGTTTGATTTAGGGTTTAATTTCCTTTTATAATAATTTTTTTAATGAATATTGGCAAAAACAGTGATACAGGAGAAATGGATTTTCTGGGTTTGACAAATTTGAAACTATTAACACCTTTTGATATTTCTGGAGTGTTCTCTATACCTTTAGGAATTTTGGGATTTTCTATGTTATTTGGTGTTTGAGAGTTGAATTGGACATTTGAGCGAAGTTAGGCTAGTTGGATTCATTTGTAATTCTCCTTCACTGTTGAAAAGTTCAATATATTGTGGTCCTATAAGGGTTTAACTTGGAATAAAGGAAGTAAACTGTAATGCTGATTTGCTTCGAGAGGCCGATCTCTCAAGAAGGATTCGTAGGCGGATGAGGAAGTAGTTTAACTTAGAATACAGATTGCGTTGCATGGTCTTGCAGTGCACTCACTCCCCTTACAGGAACGAGACGAAGCATCTCAACTTTAGACCAATACAATTATACTACTATACAAAATTTAGATGATCCTGCTTTTCAGTTGTTGAAAACACTATACCAATTGAACTATACCCTTATAACTCTATGAAATTTAGATAATCCTGCTTTTCAGTCGCTGAAAACATTAACTGTCTTGGCCTGTTAGTTGTTGCTCCTGGTTTAATCATCTTTTGTACTTGTATCATTTGGTCCTAAAAAATACATGTTGAGTAACCTTGCAATGCTTTATCTTACTAACCAGTGGCAAAATGTTCCTGAAAATGTTGGACAGAATAAGAAATGTTAGGGTAGGTTACTATCTAAAGGAGGTTACAATGGAAAATAAAATTATAAGGATTTGGAAACCATTTAATATAACTAAGGGGAATGCCAATAGATTTGTACATATCTTATACTTCTTTATTGTTTTTTCCGTAGTAAGTCTTTTTGCTCATTTACTGCTGATGTTGAATTTCTTGTGATAGCTGGTTAATGGCTAATAACTTAAATTTTCACCCTTTCTCTGCTTTTCAAATACTTGTATCTTTTTTAATTTTTATTTTCTCACTTGTGGTGATCTGAAGTTTTGTTGATGAGATCTTTCCAGAAAGCTGGGGGGTGGGTTTATACTGAATGTAACTGAGGTCACAAAGTCTGTAGTGCTACACTGCTACATGGAAGGGGATTCTTTTTTGCAGGAAAACCTGTTTCGATTTTCCTCTGTTTAGGCTGTAAAGAGTTTCTTATGTTTTGAAGATAGTTTTCCCTTGGATAGAAAATATTTACCCTTTTAAAGAAATAATGCCAAATTCTTCTTCCTATCTCCACCTTCCTTCCTTCTTTCCTTCCGTCCACCGCCCTTCTTCCATTCTCCCTTTATTTTCTAACTTGTCTAATAAGAAACAATGCCAGTGAATTTTGAAGCCTGATTTGCATTGAAATTAAAACTCACTTCAAAATGTTTTTCTCTGAACCAACCACAGAAAAAAGGACAACCAATGGATAATTTGCTAACCAAGTGAATTGAGAAAATTAGATACTCCTGAAGTAAAAAAAAAAAAAAATCTCCTGGAATGCATGCTTTTGATGCAAATTTCAGCTTGAAGATTTTCTTCACCTCCTAAGTAGCTGTAGGATCTGTTATATCGTGTGGTGTCTTTTGGGTTGGGAATCAGTAAGTGTTGATAAGCTGATTTAACCCTTTTTTAAGCATCAATACGAAACTTCGATATTCATCCGAAATCTTAGTCTGTTACCTGAGTTAACTTGGGTACTAAGACATAACGCTTCTTTTTGGGGTCATGCTCTATAGGCCTGGTTTTTAGGTATTCCAAGAGGTTCAGTTGGTCATTAGGATATCTGCAGTGCATTGCTTGGAAATACCTTGATGTTTATTGGGGCTGTGGGCCTGTGGCTAGCCAATCTAAGTGCTTATAGCACCAAACTCCATTAAACTTGATAATGCTTAATGCTCTTGGTTGTGGTGGATTTTTATTTAGATGTTTTTCAGGTCTGGCAGTGCTTAGATTTTATCATTATGACTGTGTTGACTTACAATGTAAACCTAATTTCGACGCTTTATGGTTAGTACTTGAGCTTTAGCTTTATAGCTTTCACGAATGCTACTGTATAGGCATCTCAGGGTGGACTTTGTTTGTGCTGCTCTGGATAAGAAGTCTCCTCATCATCTATATTTTTGTAGTATTTACTTCACTTAATCAGCTGATTGAGTAGTTATACAAGAAACAAACTATGAAATCTGTGTTTCATCTTTTGGGACTTATGTTAGGATAAGTTCAGTTTGTAGCTTAATTTTGTGTTTGCTTTGTTGGATGTTATCTCTAGGACCTTAAAGCTCTTGGTCAATTTCATTGAGACACTTTTTGCATCTGCCTGCTTATTTTAGGTCATGACTCATGACTTTGGGATTCTGCATGGATGTGCAACATGGAATGTGCATATTTTAGAGTTTATCTGTTTCATCTTTTGGAATGTGATATAGAGGATTTTCTCCCATCATGTTGTGTACACCAATGATCCTCTGGTTCTTGCATGCTTAACTGGTCCTGAACACATCTTTCCTGTTCATTAACTAACTCAAGGTTACTATCTATTCTATCTTAACAGGGATGGACTTGATGCAAAACTTCCAAGAATACGCAGCTGAATGCCAATCGAACGAGGATGGAACAGTAAAACAAGAATATAACTCGGGTTTAGCTCCAAACACAGAATCTGAAAGCAGTCAAAGCTCTTTTGACTGCAATATATGCTTTGACGTAGCTCATGATCCTGTTGTCACACGTTGTGGTCACCTATACTGTTGGGCATGTATTTTCAAGTGGCTCAATGTCCAAAGCTCCTCCTCTTCTGAGCAAACTCATCAGAAGGCTTGCCCTGTTTGTAAGGCAAATATATCACAGACTTCGTTGATCCCCCTTTACTGCCATGGCCCTTCCCGTAGTGATGATGAGGCTAGGAAATCTCAACGAGATGTTATCCCTCCAAGACCTGCTGCTGCGAATTCTCCTTCAAGTCCACAACAACAACAACTTCACTCAAATCAACAATACCCTGAATTTCGTTATGCCTCAATATCATCTTCAAATTATTTGAGTCCTACAATGGCTGGGATTCTTATTCCCACAATTGGATTATTAGGAGAGTTGGTTTACACAGGGATGCTTGGAAGTGTTGATACAAACTTGTTCGCATCACCTCATCCGAATTCTTATGCTATTGTTAGGCATAGCAATCCTCGGATGAGGAGGCAAGAGCTGCAGGTAGGTAAGTCCCTTGACAGAGTGTCCAAGTTTCTTTTGTGTTGCGTAGTCTTATGCTTGCTTTTGTTCTGAAAACTAACTTCTTTGTATGTATACTTGTAAAGACTGTATACTATTACTAGCACCACTCCCACTGTTGAGATGTTGGAACTCCTTCGAAAGGAAGTGTAGGTTTCATAAGCTAGCTTGTATCCACTATATCAGGTGTTTGAATGGTCCAACTTATGTTCTGCTGGGTGTCTTTGGTTCTGGGAATGAACTTTGCAAGTTCTCATTCGAATATTGTTTGTGAATAATACTTTCCATTATTGTTGTAATCTGGTTTTTTCTTTTCTCTTTTTAGGTTAAAATATAGACAATATGGAGTAGTTTATATTGTATCGAACTAGTTGTTGGCACAAACTAACACTGAAGTAACCGCTGTATAGTTCCGACCACTCAAAATTACGGGTTCACCATATCTCAATAAGAAACTTGCTAGTCAATTTTGCAGAATTATAAAGGAACTTAAAACCGAAGAATTCCCCATTATGATTGGAGTGTATCAAGGTTCTGCACATAGCCCGTTTCTTTTTGTTATAGTCATTGATGAATTGACGAGGTCAATCTAAGATGGTATACCCTATGATATTGTGTTGATTGATGAAACAAAAGGAGTGAAAAGTAAGTTGGAGTTATGGAGACAAACTTTGGAATCTCGGGGTTTTAGGCTAGTGAAAAGAAGACGGAATATATGGAGTGTAAGTTTGATAGAGAGACAGGGGTGATTACCTTAGATGGGAAAATTGAGTCTAAGGCTCTGAAAGTTTCGTTATTTAGGATCTATTATCCAAAAGGATGGAGAATTGGATGGCGATGTGGCCCATAGAATCAAAGCAGGTTGGTTGAAGTGGAAAGTTGTTACGGGGTTCCTATGTGATTCAGACATGCCCCAAATATTGAAAGAAAATTTTTACCCCACGGCAATTCGACCGGCTTTGTTATACAGCACGAAATGTTGGGCGGTGAAACATTGTCACGTGCACAAGATGAATGTGGCGGAGATGCGCATGTTACGTTGGATGTGTGGGCATACAAGAAATGATCGTTTGAGGAATGAGATTATTAGAAAGAAAGTAGGGGTTGCACAGATTGAGTTTAAGATGATGGAAAATCGTTTAAGATGGTTTGGACATATAAGCAGAAGATCAAGTGATGCCCCGGTTAGGAGAATAGAAGGGTGGCAAAGTGATAGAATTGCAAAGGGTAAGGGAAGACATAAGAAAACTTGGAGGAAGGTGATTGAGCACGATATGAGCTTTATTGGGATTGAGGAAAATATGGCGTTGGATAGGACATAG

mRNA sequence

ACAAAAAAATAAGATTAGGATAAACCCTCAAAATTGTATAATAGTCGATTAACAACAAATTGAACCCTAATGTGGTTGGTGGAATGTACCAAAATAAAAGAAAAATGATGCCCCCATTTTTGATGGCCAAAACTTCCACGCAGCTTCTTAATTATGGAGTCTGTAGGTGGGTTTACGCGATATTTTCTTCTGCCCCAGCTCGAACTCAATTCCCAGATTATTAGAGGGATGGACTTGATGCAAAACTTCCAAGAATACGCAGCTGAATGCCAATCGAACGAGGATGGAACAGTAAAACAAGAATATAACTCGGGTTTAGCTCCAAACACAGAATCTGAAAGCAGTCAAAGCTCTTTTGACTGCAATATATGCTTTGACGTAGCTCATGATCCTGTTGTCACACGTTGTGGTCACCTATACTGTTGGGCATGTATTTTCAAGTGGCTCAATGTCCAAAGCTCCTCCTCTTCTGAGCAAACTCATCAGAAGGCTTGCCCTGTTTGTAAGGCAAATATATCACAGACTTCGTTGATCCCCCTTTACTGCCATGGCCCTTCCCGTAGTGATGATGAGGCTAGGAAATCTCAACGAGATGTTATCCCTCCAAGACCTGCTGCTGCGAATTCTCCTTCAAGTCCACAACAACAACAACTTCACTCAAATCAACAATACCCTGAATTTCGTTATGCCTCAATATCATCTTCAAATTATTTGAGTCCTACAATGGCTGGGATTCTTATTCCCACAATTGGATTATTAGGAGAGTTGGTTTACACAGGGATGCTTGGAAGTGTTGATACAAACTTGTTCGCATCACCTCATCCGAATTCTTATGCTATTGTTAGGCATAGCAATCCTCGGATGAGGAGGCAAGAGCTGCAGGTAGGATCTATTATCCAAAAGGATGGAGAATTGGATGGCGATGTGGCCCATAGAATCAAAGCAGGTTGGTTGAAGTGGAAAGTTGTTACGGGGTTCCTATGTGATTCAGACATGCCCCAAATATTGAAAGAAAATTTTTACCCCACGGCAATTCGACCGGCTTTGTTATACAGCACGAAATGTTGGGCGGTGAAACATTGTCACGTGCACAAGATGAATGTGGCGGAGATGCGCATGTTACGTTGGATGTGTGGGCATACAAGAAATGATCGTTTGAGGAATGAGATTATTAGAAAGAAAGTAGGGGTTGCACAGATTGAGTTTAAGATGATGGAAAATCGTTTAAGATGGTTTGGACATATAAGCAGAAGATCAAGTGATGCCCCGGTTAGGAGAATAGAAGGGTGGCAAAGTGATAGAATTGCAAAGGGTAAGGGAAGACATAAGAAAACTTGGAGGAAGGTGATTGAGCACGATATGAGCTTTATTGGGATTGAGGAAAATATGGCGTTGGATAGGACATAG

Coding sequence (CDS)

ATGGAGTCTGTAGGTGGGTTTACGCGATATTTTCTTCTGCCCCAGCTCGAACTCAATTCCCAGATTATTAGAGGGATGGACTTGATGCAAAACTTCCAAGAATACGCAGCTGAATGCCAATCGAACGAGGATGGAACAGTAAAACAAGAATATAACTCGGGTTTAGCTCCAAACACAGAATCTGAAAGCAGTCAAAGCTCTTTTGACTGCAATATATGCTTTGACGTAGCTCATGATCCTGTTGTCACACGTTGTGGTCACCTATACTGTTGGGCATGTATTTTCAAGTGGCTCAATGTCCAAAGCTCCTCCTCTTCTGAGCAAACTCATCAGAAGGCTTGCCCTGTTTGTAAGGCAAATATATCACAGACTTCGTTGATCCCCCTTTACTGCCATGGCCCTTCCCGTAGTGATGATGAGGCTAGGAAATCTCAACGAGATGTTATCCCTCCAAGACCTGCTGCTGCGAATTCTCCTTCAAGTCCACAACAACAACAACTTCACTCAAATCAACAATACCCTGAATTTCGTTATGCCTCAATATCATCTTCAAATTATTTGAGTCCTACAATGGCTGGGATTCTTATTCCCACAATTGGATTATTAGGAGAGTTGGTTTACACAGGGATGCTTGGAAGTGTTGATACAAACTTGTTCGCATCACCTCATCCGAATTCTTATGCTATTGTTAGGCATAGCAATCCTCGGATGAGGAGGCAAGAGCTGCAGGTAGGATCTATTATCCAAAAGGATGGAGAATTGGATGGCGATGTGGCCCATAGAATCAAAGCAGGTTGGTTGAAGTGGAAAGTTGTTACGGGGTTCCTATGTGATTCAGACATGCCCCAAATATTGAAAGAAAATTTTTACCCCACGGCAATTCGACCGGCTTTGTTATACAGCACGAAATGTTGGGCGGTGAAACATTGTCACGTGCACAAGATGAATGTGGCGGAGATGCGCATGTTACGTTGGATGTGTGGGCATACAAGAAATGATCGTTTGAGGAATGAGATTATTAGAAAGAAAGTAGGGGTTGCACAGATTGAGTTTAAGATGATGGAAAATCGTTTAAGATGGTTTGGACATATAAGCAGAAGATCAAGTGATGCCCCGGTTAGGAGAATAGAAGGGTGGCAAAGTGATAGAATTGCAAAGGGTAAGGGAAGACATAAGAAAACTTGGAGGAAGGTGATTGAGCACGATATGAGCTTTATTGGGATTGAGGAAAATATGGCGTTGGATAGGACATAG

Protein sequence

MESVGGFTRYFLLPQLELNSQIIRGMDLMQNFQEYAAECQSNEDGTVKQEYNSGLAPNTESESSQSSFDCNICFDVAHDPVVTRCGHLYCWACIFKWLNVQSSSSSEQTHQKACPVCKANISQTSLIPLYCHGPSRSDDEARKSQRDVIPPRPAAANSPSSPQQQQLHSNQQYPEFRYASISSSNYLSPTMAGILIPTIGLLGELVYTGMLGSVDTNLFASPHPNSYAIVRHSNPRMRRQELQVGSIIQKDGELDGDVAHRIKAGWLKWKVVTGFLCDSDMPQILKENFYPTAIRPALLYSTKCWAVKHCHVHKMNVAEMRMLRWMCGHTRNDRLRNEIIRKKVGVAQIEFKMMENRLRWFGHISRRSSDAPVRRIEGWQSDRIAKGKGRHKKTWRKVIEHDMSFIGIEENMALDRT

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo20870	Spo20870	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo20870.1	Spo20870.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo20870.1.exon.1	Spo20870.1.exon.1	exon
Spo20870.1.exon.2	Spo20870.1.exon.2	exon
Spo20870.1.exon.3	Spo20870.1.exon.3	exon
Spo20870.1.exon.4	Spo20870.1.exon.4	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo20870.1.utr5p.1	Spo20870.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo20870.1.CDS.1	Spo20870.1.CDS.1	CDS
Spo20870.1.CDS.2	Spo20870.1.CDS.2	CDS
Spo20870.1.CDS.3	Spo20870.1.CDS.3	CDS
Spo20870.1.CDS.4	Spo20870.1.CDS.4	CDS

Homology

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BLAST of Spo20870.1 vs. NCBI nr
Match: gi|902205889|gb|KNA15303.1| (hypothetical protein SOVF_099420 [Spinacia oleracea])

HSP 1 Score: 449.1 bits (1154), Expect = 8.300e-123
Identity = 220/225 (97.78%), Postives = 222/225 (98.67%), Query Frame = 1


		  
Query: 26  MDLMQNFQEYAAECQSNEDGTVKQEYNSGLAPNTESESSQSSFDCNICFDVAHDPVVTRC 85
           MDLMQNFQEYAAECQSNEDGTVKQEYNSGLAPNTESESSQSSFDCNICFDVAHDPVVTRC
Sbjct: 1   MDLMQNFQEYAAECQSNEDGTVKQEYNSGLAPNTESESSQSSFDCNICFDVAHDPVVTRC 60

Query: 86  GHLYCWACIFKWLNVQSSSSSEQTHQKACPVCKANISQTSLIPLYCHGPSRSDDEARKSQ 145
           GHLYCWACIFKWLNVQSSSSSEQTHQKACPVCKANISQTSLIPLYCHGPSRSDDEARKSQ
Sbjct: 61  GHLYCWACIFKWLNVQSSSSSEQTHQKACPVCKANISQTSLIPLYCHGPSRSDDEARKSQ 120

Query: 146 RDVIPPRPAAANSPSSPQQQQLHSNQQYPEFRYASISSSNYLSPTMAGILIPTIGLLGEL 205
           RDVIPPRPAAANSPSSPQQQQLHSNQQYPEFRYASISSSNYLSPTMAGILIPTIGLLGEL
Sbjct: 121 RDVIPPRPAAANSPSSPQQQQLHSNQQYPEFRYASISSSNYLSPTMAGILIPTIGLLGEL 180

Query: 206 VYTGMLGSVDTNLFASPHPNSYAIVRHSNPRMRRQELQVGSIIQK 251
           VYTGMLGSVDTNLFASPHPNSYAIVRHSNPRMRRQELQVG  + +
Sbjct: 181 VYTGMLGSVDTNLFASPHPNSYAIVRHSNPRMRRQELQVGKSLDR 225

[Close]

BLAST of Spo20870.1 vs. NCBI nr
Match: gi|731345613|ref|XP_010684010.1| (PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 292.7 bits (748), Expect = 9.900e-76
Identity = 134/174 (77.01%), Postives = 149/174 (85.63%), Query Frame = 1


		  
Query: 244 VGSIIQKDGELDGDVAHRIKAGWLKWKVVTGFLCDSDMPQILKENFYPTAIRPALLYSTK 303
           +GSI+QKDGELDGDVAHRI AGWLKWK  TGFLCDS +PQ LK  FY TAIRPALLY T+
Sbjct: 172 LGSILQKDGELDGDVAHRINAGWLKWKSATGFLCDSGIPQRLKGKFYRTAIRPALLYGTE 231

Query: 304 CWAVKHCHVHKMNVAEMRMLRWMCGHTRNDRLRNEIIRKKVGVAQIEFKMMENRLRWFGH 363
           CWAVK CHVHKMNVAEMRMLRWMCGHTR DRLRNE+IR+KVGVA IE KM ENRLRWFGH
Sbjct: 232 CWAVKQCHVHKMNVAEMRMLRWMCGHTRKDRLRNEVIREKVGVASIEEKMRENRLRWFGH 291

Query: 364 ISRRSSDAPVRRIEGWQSDRIAKGKGRHKKTWRKVIEHDMSFIGIEENMALDRT 418
           + RRS DAPVRRIE W+S++I KG+GR K TW +VIE DM  +GIEE+M LDR+
Sbjct: 292 VKRRSGDAPVRRIEEWRSNQIVKGRGRPKMTWLRVIESDMRLLGIEESMTLDRS 345

[Close]

BLAST of Spo20870.1 vs. NCBI nr
Match: gi|731366314|ref|XP_010695001.1| (PREDICTED: E3 ubiquitin-protein ligase RMA3-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 291.6 bits (745), Expect = 2.200e-75
Identity = 154/232 (66.38%), Postives = 175/232 (75.43%), Query Frame = 1


		  
Query: 26  MDLMQNFQEYAAECQSNEDGTVKQEYNSGLAPNTESESSQSSFDCNICFDVAHDPVVTRC 85
           MD +QNF+++AAEC SNED  +KQ YNSGL P TESE++  SFDCNICFD+AHDPVVT C
Sbjct: 1   MDTIQNFEDHAAECLSNEDPIIKQTYNSGLPPTTESENNHGSFDCNICFDLAHDPVVTLC 60

Query: 86  GHLYCWACIFKWLNVQSSSSSEQTHQKACPVCKANISQTSLIPLYCHGPSRSDDEARKSQ 145
           GHLYCWACIFKWL+VQ SSSS  T QKACPVCKANISQ+SLIPLYCHGPSR +DE RK  
Sbjct: 61  GHLYCWACIFKWLDVQ-SSSSHSTQQKACPVCKANISQSSLIPLYCHGPSRGEDELRKYH 120

Query: 146 RDVIPPRPAAA------NSPSSPQQQQLHSN---QQYPEF---RYASISSSNYLSPTMAG 205
            DVIPPRP A       N+ +S   QQL SN    QYP+F    Y +ISS NY+SPTM G
Sbjct: 121 HDVIPPRPTACSLRTFINAANSGSNQQLPSNPFESQYPDFHDGNYDAISSMNYVSPTMTG 180

Query: 206 ILIPTIGLLGELVYTGMLGSVDTNLFASPHPNSYAIVRH-SNPRMRRQELQV 245
           I+ PTIGLLGELV   M GS + ++F  P PNSYA V + SN RMRRQELQV
Sbjct: 181 IIYPTIGLLGELVCPRMFGSTNMSVFTLPLPNSYATVGYNSNSRMRRQELQV 231

[Close]

BLAST of Spo20870.1 vs. NCBI nr
Match: gi|731366105|ref|XP_010694888.1| (PREDICTED: uncharacterized protein LOC104907627 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 288.9 bits (738), Expect = 1.400e-74
Identity = 133/174 (76.44%), Postives = 147/174 (84.48%), Query Frame = 1


		  
Query: 244 VGSIIQKDGELDGDVAHRIKAGWLKWKVVTGFLCDSDMPQILKENFYPTAIRPALLYSTK 303
           +GSI+QKDGELDGDV HRI AGWLKWK  TGFLCDS +PQ LK  FY TAIRPALLY T+
Sbjct: 107 LGSILQKDGELDGDVVHRINAGWLKWKSATGFLCDSGIPQRLKGKFYRTAIRPALLYGTE 166

Query: 304 CWAVKHCHVHKMNVAEMRMLRWMCGHTRNDRLRNEIIRKKVGVAQIEFKMMENRLRWFGH 363
           CWAVK CHVHKM VAEMRMLRWMCGHTR DRLRNE+IR+KVGVA IE KM ENRLRWFGH
Sbjct: 167 CWAVKQCHVHKMFVAEMRMLRWMCGHTRKDRLRNEVIREKVGVAYIEGKMRENRLRWFGH 226

Query: 364 ISRRSSDAPVRRIEGWQSDRIAKGKGRHKKTWRKVIEHDMSFIGIEENMALDRT 418
           + RRS DAPVRRIE W+S++I KG+GR K TW +VIE DM  +GIEE+M LDRT
Sbjct: 227 VKRRSGDAPVRRIEEWRSNQIVKGRGRPKMTWLRVIESDMRLLGIEESMTLDRT 280

[Close]

BLAST of Spo20870.1 vs. NCBI nr
Match: gi|400131576|emb|CCH50976.1| (T4.15 [Malus x robusta])

HSP 1 Score: 230.7 bits (587), Expect = 4.600e-57
Identity = 103/173 (59.54%), Postives = 133/173 (76.88%), Query Frame = 1


		  
Query: 244 VGSIIQKDGELDGDVAHRIKAGWLKWKVVTGFLCDSDMPQILKENFYPTAIRPALLYSTK 303
           +GSI+QK+GELDGD+ HRI+AGW+KWK  +G LCD  MP  LK  FY TAIRPA+LY T+
Sbjct: 800 LGSILQKNGELDGDLNHRIQAGWMKWKSASGVLCDRRMPLKLKGKFYRTAIRPAMLYGTE 859

Query: 304 CWAVKHCHVHKMNVAEMRMLRWMCGHTRNDRLRNEIIRKKVGVAQIEFKMMENRLRWFGH 363
           CWAVKH HVHKM VAEMRMLRWMCGHTR D++RNE IR KVGVA+I+ KM EN+LRWFGH
Sbjct: 860 CWAVKHQHVHKMGVAEMRMLRWMCGHTRKDKIRNEDIRGKVGVAEIQGKMRENQLRWFGH 919

Query: 364 ISRRSSDAPVRRIEGWQSDRIAKGKGRHKKTWRKVIEHDMSFIGIEENMALDR 417
           + RR +DAP+RR +     +  +G+GR +KT  + +  D+ ++ + ++M  DR
Sbjct: 920 VQRRPTDAPIRRCDYGTEVQGRRGRGRPRKTLEETLRKDLEYLDLTKDMTQDR 972

[Close]

BLAST of Spo20870.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R703_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_099420 PE=4 SV=1)

HSP 1 Score: 449.1 bits (1154), Expect = 5.800e-123
Identity = 220/225 (97.78%), Postives = 222/225 (98.67%), Query Frame = 1


		  
Query: 26  MDLMQNFQEYAAECQSNEDGTVKQEYNSGLAPNTESESSQSSFDCNICFDVAHDPVVTRC 85
           MDLMQNFQEYAAECQSNEDGTVKQEYNSGLAPNTESESSQSSFDCNICFDVAHDPVVTRC
Sbjct: 1   MDLMQNFQEYAAECQSNEDGTVKQEYNSGLAPNTESESSQSSFDCNICFDVAHDPVVTRC 60

Query: 86  GHLYCWACIFKWLNVQSSSSSEQTHQKACPVCKANISQTSLIPLYCHGPSRSDDEARKSQ 145
           GHLYCWACIFKWLNVQSSSSSEQTHQKACPVCKANISQTSLIPLYCHGPSRSDDEARKSQ
Sbjct: 61  GHLYCWACIFKWLNVQSSSSSEQTHQKACPVCKANISQTSLIPLYCHGPSRSDDEARKSQ 120

Query: 146 RDVIPPRPAAANSPSSPQQQQLHSNQQYPEFRYASISSSNYLSPTMAGILIPTIGLLGEL 205
           RDVIPPRPAAANSPSSPQQQQLHSNQQYPEFRYASISSSNYLSPTMAGILIPTIGLLGEL
Sbjct: 121 RDVIPPRPAAANSPSSPQQQQLHSNQQYPEFRYASISSSNYLSPTMAGILIPTIGLLGEL 180

Query: 206 VYTGMLGSVDTNLFASPHPNSYAIVRHSNPRMRRQELQVGSIIQK 251
           VYTGMLGSVDTNLFASPHPNSYAIVRHSNPRMRRQELQVG  + +
Sbjct: 181 VYTGMLGSVDTNLFASPHPNSYAIVRHSNPRMRRQELQVGKSLDR 225

[Close]

BLAST of Spo20870.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BD21_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g096870 PE=4 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 1.500e-75
Identity = 154/232 (66.38%), Postives = 175/232 (75.43%), Query Frame = 1


		  
Query: 26  MDLMQNFQEYAAECQSNEDGTVKQEYNSGLAPNTESESSQSSFDCNICFDVAHDPVVTRC 85
           MD +QNF+++AAEC SNED  +KQ YNSGL P TESE++  SFDCNICFD+AHDPVVT C
Sbjct: 1   MDTIQNFEDHAAECLSNEDPIIKQTYNSGLPPTTESENNHGSFDCNICFDLAHDPVVTLC 60

Query: 86  GHLYCWACIFKWLNVQSSSSSEQTHQKACPVCKANISQTSLIPLYCHGPSRSDDEARKSQ 145
           GHLYCWACIFKWL+VQ SSSS  T QKACPVCKANISQ+SLIPLYCHGPSR +DE RK  
Sbjct: 61  GHLYCWACIFKWLDVQ-SSSSHSTQQKACPVCKANISQSSLIPLYCHGPSRGEDELRKYH 120

Query: 146 RDVIPPRPAAA------NSPSSPQQQQLHSN---QQYPEF---RYASISSSNYLSPTMAG 205
            DVIPPRP A       N+ +S   QQL SN    QYP+F    Y +ISS NY+SPTM G
Sbjct: 121 HDVIPPRPTACSLRTFINAANSGSNQQLPSNPFESQYPDFHDGNYDAISSMNYVSPTMTG 180

Query: 206 ILIPTIGLLGELVYTGMLGSVDTNLFASPHPNSYAIVRH-SNPRMRRQELQV 245
           I+ PTIGLLGELV   M GS + ++F  P PNSYA V + SN RMRRQELQV
Sbjct: 181 IIYPTIGLLGELVCPRMFGSTNMSVFTLPLPNSYATVGYNSNSRMRRQELQV 231

[Close]

BLAST of Spo20870.1 vs. UniProtKB/TrEMBL
Match: I7K8L3_9ROSA (T4.15 protein OS=Malus x robusta GN=T4.15 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 3.200e-57
Identity = 103/173 (59.54%), Postives = 133/173 (76.88%), Query Frame = 1


		  
Query: 244 VGSIIQKDGELDGDVAHRIKAGWLKWKVVTGFLCDSDMPQILKENFYPTAIRPALLYSTK 303
           +GSI+QK+GELDGD+ HRI+AGW+KWK  +G LCD  MP  LK  FY TAIRPA+LY T+
Sbjct: 800 LGSILQKNGELDGDLNHRIQAGWMKWKSASGVLCDRRMPLKLKGKFYRTAIRPAMLYGTE 859

Query: 304 CWAVKHCHVHKMNVAEMRMLRWMCGHTRNDRLRNEIIRKKVGVAQIEFKMMENRLRWFGH 363
           CWAVKH HVHKM VAEMRMLRWMCGHTR D++RNE IR KVGVA+I+ KM EN+LRWFGH
Sbjct: 860 CWAVKHQHVHKMGVAEMRMLRWMCGHTRKDKIRNEDIRGKVGVAEIQGKMRENQLRWFGH 919

Query: 364 ISRRSSDAPVRRIEGWQSDRIAKGKGRHKKTWRKVIEHDMSFIGIEENMALDR 417
           + RR +DAP+RR +     +  +G+GR +KT  + +  D+ ++ + ++M  DR
Sbjct: 920 VQRRPTDAPIRRCDYGTEVQGRRGRGRPRKTLEETLRKDLEYLDLTKDMTQDR 972

[Close]

BLAST of Spo20870.1 vs. UniProtKB/TrEMBL
Match: M1BPI1_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400019390 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 5.100e-55
Identity = 98/173 (56.65%), Postives = 129/173 (74.57%), Query Frame = 1


		  
Query: 244 VGSIIQKDGELDGDVAHRIKAGWLKWKVVTGFLCDSDMPQILKENFYPTAIRPALLYSTK 303
           +GS+IQ+ G++D DV HRI A W+KW++ +G LCD  +P  LK  FY   +RPALLY  +
Sbjct: 683 LGSVIQESGDIDDDVTHRIGAAWMKWRLASGVLCDKKIPPKLKGKFYRVVVRPALLYGAE 742

Query: 304 CWAVKHCHVHKMNVAEMRMLRWMCGHTRNDRLRNEIIRKKVGVAQIEFKMMENRLRWFGH 363
           CW VK+ HV KM+VAEMRMLRWMCGHTR+D++RNE+IR+KVGVA +  K+ E RLRWFGH
Sbjct: 743 CWPVKNSHVQKMHVAEMRMLRWMCGHTRSDKIRNEVIREKVGVASVVDKLREARLRWFGH 802

Query: 364 ISRRSSDAPVRRIEGWQSDRIAKGKGRHKKTWRKVIEHDMSFIGIEENMALDR 417
           + RR +DAPVRR EG   +   +G+GR KK W +VI  D++ + I E+M LDR
Sbjct: 803 VKRRGADAPVRRCEGLVVEGTRRGRGRPKKYWGEVIRQDLAQLHITEDMTLDR 855

[Close]

BLAST of Spo20870.1 vs. UniProtKB/TrEMBL
Match: Q6L4B3_SOLDE (Polyprotein, putative OS=Solanum demissum GN=SDM1_19t00015 PE=4 SV=2)

HSP 1 Score: 221.5 bits (563), Expect = 2.000e-54
Identity = 96/173 (55.49%), Postives = 128/173 (73.99%), Query Frame = 1


		  
Query: 244 VGSIIQKDGELDGDVAHRIKAGWLKWKVVTGFLCDSDMPQILKENFYPTAIRPALLYSTK 303
           +G++IQ  G++D DV HR+ A W+KW++ +G LCD  +   LK  FY   +RPALLY  +
Sbjct: 508 LGAVIQGSGDIDDDVTHRVGAAWMKWRLASGVLCDKKISPKLKGKFYRVVVRPALLYGAE 567

Query: 304 CWAVKHCHVHKMNVAEMRMLRWMCGHTRNDRLRNEIIRKKVGVAQIEFKMMENRLRWFGH 363
           CW VK+ HVHKM+VAEMRMLRWMCGHTR+D++RNE+IR+KVGVA +  K+ E RLRWFGH
Sbjct: 568 CWPVKNAHVHKMHVAEMRMLRWMCGHTRSDKIRNEVIREKVGVASVVDKLREARLRWFGH 627

Query: 364 ISRRSSDAPVRRIEGWQSDRIAKGKGRHKKTWRKVIEHDMSFIGIEENMALDR 417
           + RRS+DAPVRR E    +   +G+GR KK W +VI  D++ + I E+M LDR
Sbjct: 628 VKRRSADAPVRRCEVMVVEGTRRGRGRPKKYWEEVIRQDLAMLHITEDMTLDR 680

[Close]

BLAST of Spo20870.1 vs. ExPASy Swiss-Prot
Match: RMA3_ARATH (E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana GN=RMA3 PE=1 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 8.800e-32
Identity = 84/213 (39.44%), Postives = 116/213 (54.46%), Query Frame = 1


		  
Query: 40  QSNEDGTV-KQEYNSGLAPNTESESSQSSFDCNICFDVAHDPVVTRCGHLYCWACIFKWL 99
           +++++G + KQ+ N   AP     +    FDCNIC D AHDPVVT CGHL+CW CI+KWL
Sbjct: 13  RAHDNGFIAKQKPNLTTAPTAGQANESGCFDCNICLDTAHDPVVTLCGHLFCWPCIYKWL 72

Query: 100 NVQSSSSSEQTHQKACPVCKANISQTSLIPLYCHGPSRSDDEARKSQRDV----IPPRPA 159
           +VQ SS S   HQ  CPVCK+NI+ TSL+PLY  G S         ++D     IP RPA
Sbjct: 73  HVQLSSVSVDQHQNNCPVCKSNITITSLVPLYGRGMSSPSSTFGSKKQDALSTDIPRRPA 132

Query: 160 ---------AANSPSSPQQQQLHS----NQQYPEFRYASISSSNYLSPTMAGILIPTIGL 219
                    +A+S +   Q Q  S    N QY    + +  S++  +  M   L P IG+
Sbjct: 133 PSALRNPITSASSLNPSLQHQTLSPSFHNHQYSPRGFTTTESTDLANAVMMSFLYPVIGM 192

Query: 220 LGELVYTGMLGSVDTNLFASPHPNSYAIVRHSN 235
            G+LVYT + G+  TN  A P+ +   + R  +
Sbjct: 193 FGDLVYTRIFGTF-TNTIAQPYQSQRMMQREKS 224

[Close]

BLAST of Spo20870.1 vs. ExPASy Swiss-Prot
Match: RMA1_ARATH (E3 ubiquitin-protein ligase RMA1 OS=Arabidopsis thaliana GN=RMA1 PE=1 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 7.700e-28
Identity = 75/195 (38.46%), Postives = 113/195 (57.95%), Query Frame = 1


		  
Query: 62  ESSQSSFDCNICFDVAHDPVVTRCGHLYCWACIFKWLNVQS-SSSSEQTHQKACPVCKAN 121
           ++  S+FDCNIC D   +PVVT CGHL+CW CI KWL+VQS S+S E    + CPVCK+ 
Sbjct: 40  DTDDSNFDCNICLDSVQEPVVTLCGHLFCWPCIHKWLDVQSFSTSDEYQRHRQCPVCKSK 99

Query: 122 ISQTSLIPLYCHGPSRSDDEARKSQRDVIPPRPAA----ANSPSSPQ-------QQQLHS 181
           +S ++L+PLY  G   + +E + S    +P RP         P+SP         Q++H 
Sbjct: 100 VSHSTLVPLYGRGRCTTQEEGKNS----VPKRPVGPVYRLEMPNSPYASTDLRLSQRVHF 159

Query: 182 NQ-QYPEFRYASISSSNYLSPTMAGILIPTIGLLGELVYTGMLGSVDTNLFASPHPNSYA 241
           N  Q   +  + + SSN LS   + +L P + ++GE+V T + G+   + FA  +P++Y 
Sbjct: 160 NSPQEGYYPVSGVMSSNSLS--YSAVLDPVMVMVGEMVATRLFGTRVMDRFA--YPDTYN 219

Query: 242 IVRHSNPRMRRQELQ 244
           +   S PRMRR+ +Q
Sbjct: 220 LAGTSGPRMRRRIMQ 226

[Close]

BLAST of Spo20870.1 vs. ExPASy Swiss-Prot
Match: RMA1_CAPAN (E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum GN=RMA1H1 PE=1 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 5.000e-27
Identity = 76/197 (38.58%), Postives = 104/197 (52.79%), Query Frame = 1


		  
Query: 62  ESSQSSFDCNICFDVAHDPVVTRCGHLYCWACIFKWLNVQS-SSSSEQTHQKACPVCKAN 121
           E+    FDCNIC D  H+PV+T CGHLYCW CI+KW+  QS SS +    Q  CPVCKA 
Sbjct: 33  ENISGGFDCNICLDCVHEPVITLCGHLYCWPCIYKWIYFQSVSSENSDQQQPQCPVCKAE 92

Query: 122 ISQTSLIPLYCHGPSRSDDEARKSQR--DVIPPRPAA---------ANSPSSPQQ----- 181
           +S+ +LIPLY  G   +     K+     VIP RP +           + S+P Q     
Sbjct: 93  VSEKTLIPLYGRGGQSTKPSEGKAPNLGIVIPQRPPSPRCGGHFLLPTTDSNPSQLLQRR 152

Query: 182 -QQLHSNQQYPEFRYASISSSNYLSPTMAGILIPTIGLLGELVYTGMLGSVDTNLFASPH 241
             Q  S  + P ++  S  SS  LSP  A   +    ++GE+ Y  + G+  T ++   +
Sbjct: 153 GYQQQSQTRQPAYQ-GSYMSSPMLSPGGATANMLQHSMIGEVAYARIFGNSSTTMYT--Y 212

[Close]

BLAST of Spo20870.1 vs. ExPASy Swiss-Prot
Match: RN185_CHICK (E3 ubiquitin-protein ligase RNF185 OS=Gallus gallus GN=RNF185 PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 6.700e-16
Identity = 44/118 (37.29%), Postives = 65/118 (55.08%), Query Frame = 1


		  
Query: 36  AAECQSNEDGTVKQEYNSGLAPNTESESSQSSFDCNICFDVAHDPVVTRCGHLYCWACIF 95
           A+   S+  GT     ++G   NT  +++   F+CNIC D A D V++ CGHL+CW C+ 
Sbjct: 10  ASTKSSSTGGTSGSSSSNGAGDNTNQDNT---FECNICLDTAKDAVISLCGHLFCWPCLH 69

Query: 96  KWLNVQSSSSSEQTHQKACPVCKANISQTSLIPLYCHGPSRSDDEARKSQRDVIPPRP 154
           +WL         + +++ CPVCKA IS+  +IPLY  G +   D   K+     PPRP
Sbjct: 70  QWLET-------RPNRQVCPVCKAGISRDKVIPLYGRGSTGQQDPREKT-----PPRP 112

[Close]

BLAST of Spo20870.1 vs. ExPASy Swiss-Prot
Match: RN185_HUMAN (E3 ubiquitin-protein ligase RNF185 OS=Homo sapiens GN=RNF185 PE=1 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 8.800e-16
Identity = 40/94 (42.55%), Postives = 55/94 (58.51%), Query Frame = 1


		  
Query: 60  ESESSQSSFDCNICFDVAHDPVVTRCGHLYCWACIFKWLNVQSSSSSEQTHQKACPVCKA 119
           ES    S+F+CNIC D A D V++ CGHL+CW C+ +WL         + +++ CPVCKA
Sbjct: 29  ESGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLET-------RPNRQVCPVCKA 88

Query: 120 NISQTSLIPLYCHGPSRSDDEARKSQRDVIPPRP 154
            IS+  +IPLY  G +   D   K+     PPRP
Sbjct: 89  GISRDKVIPLYGRGSTGQQDPREKT-----PPRP 110

[Close]

BLAST of Spo20870.1 vs. TAIR (Arabidopsis)
Match: AT4G27470.1 (RING membrane-anchor 3)

HSP 1 Score: 139.4 bits (350), Expect = 4.900e-33
Identity = 84/213 (39.44%), Postives = 116/213 (54.46%), Query Frame = 1


		  
Query: 40  QSNEDGTV-KQEYNSGLAPNTESESSQSSFDCNICFDVAHDPVVTRCGHLYCWACIFKWL 99
           +++++G + KQ+ N   AP     +    FDCNIC D AHDPVVT CGHL+CW CI+KWL
Sbjct: 13  RAHDNGFIAKQKPNLTTAPTAGQANESGCFDCNICLDTAHDPVVTLCGHLFCWPCIYKWL 72

Query: 100 NVQSSSSSEQTHQKACPVCKANISQTSLIPLYCHGPSRSDDEARKSQRDV----IPPRPA 159
           +VQ SS S   HQ  CPVCK+NI+ TSL+PLY  G S         ++D     IP RPA
Sbjct: 73  HVQLSSVSVDQHQNNCPVCKSNITITSLVPLYGRGMSSPSSTFGSKKQDALSTDIPRRPA 132

Query: 160 ---------AANSPSSPQQQQLHS----NQQYPEFRYASISSSNYLSPTMAGILIPTIGL 219
                    +A+S +   Q Q  S    N QY    + +  S++  +  M   L P IG+
Sbjct: 133 PSALRNPITSASSLNPSLQHQTLSPSFHNHQYSPRGFTTTESTDLANAVMMSFLYPVIGM 192

Query: 220 LGELVYTGMLGSVDTNLFASPHPNSYAIVRHSN 235
            G+LVYT + G+  TN  A P+ +   + R  +
Sbjct: 193 FGDLVYTRIFGTF-TNTIAQPYQSQRMMQREKS 224

[Close]

BLAST of Spo20870.1 vs. TAIR (Arabidopsis)
Match: AT4G03510.1 (RING membrane-anchor 1)

HSP 1 Score: 126.3 bits (316), Expect = 4.300e-29
Identity = 75/195 (38.46%), Postives = 113/195 (57.95%), Query Frame = 1


		  
Query: 62  ESSQSSFDCNICFDVAHDPVVTRCGHLYCWACIFKWLNVQS-SSSSEQTHQKACPVCKAN 121
           ++  S+FDCNIC D   +PVVT CGHL+CW CI KWL+VQS S+S E    + CPVCK+ 
Sbjct: 40  DTDDSNFDCNICLDSVQEPVVTLCGHLFCWPCIHKWLDVQSFSTSDEYQRHRQCPVCKSK 99

Query: 122 ISQTSLIPLYCHGPSRSDDEARKSQRDVIPPRPAA----ANSPSSPQ-------QQQLHS 181
           +S ++L+PLY  G   + +E + S    +P RP         P+SP         Q++H 
Sbjct: 100 VSHSTLVPLYGRGRCTTQEEGKNS----VPKRPVGPVYRLEMPNSPYASTDLRLSQRVHF 159

Query: 182 NQ-QYPEFRYASISSSNYLSPTMAGILIPTIGLLGELVYTGMLGSVDTNLFASPHPNSYA 241
           N  Q   +  + + SSN LS   + +L P + ++GE+V T + G+   + FA  +P++Y 
Sbjct: 160 NSPQEGYYPVSGVMSSNSLS--YSAVLDPVMVMVGEMVATRLFGTRVMDRFA--YPDTYN 219

Query: 242 IVRHSNPRMRRQELQ 244
           +   S PRMRR+ +Q
Sbjct: 220 LAGTSGPRMRRRIMQ 226

[Close]

BLAST of Spo20870.1 vs. TAIR (Arabidopsis)
Match: AT1G74990.1 (RING/U-box superfamily protein)

HSP 1 Score: 95.1 bits (235), Expect = 1.100e-19
Identity = 43/115 (37.39%), Postives = 70/115 (60.87%), Query Frame = 1


		  
Query: 60  ESESSQSSFDCNICFDVAHDPVVTRCGHLYCWACIFKWLNVQSSSSSEQTHQKACPVCKA 119
           E + + ++F CNIC ++A +P+VT CGHL+CW C++KWL+  S S+        CPVCKA
Sbjct: 9   EEDDASNNFGCNICLELAREPIVTLCGHLFCWPCLYKWLHYHSKSNH-------CPVCKA 68

Query: 120 NISQTSLIPLYCHGPSRSDDEARKSQRDVIPPRPAAANSPSS-PQQQQLHSNQQY 174
            + + +L+PLY  G   SD  ++ +    +P RPAA  + ++ P+ +Q H    +
Sbjct: 69  LVKEDTLVPLYGMGKPSSDPRSKLNSGVTVPNRPAATRTETARPRLEQRHHGSSF 116

[Close]

BLAST of Spo20870.1 vs. TAIR (Arabidopsis)
Match: AT1G19310.1 (RING/U-box superfamily protein)

HSP 1 Score: 93.2 bits (230), Expect = 4.100e-19
Identity = 52/151 (34.44%), Postives = 82/151 (54.30%), Query Frame = 1


		  
Query: 58  NTESESSQSSFDCNICFDVAHDPVVTRCGHLYCWACIFKWLNVQSSSSSEQTHQKACPVC 117
           N  + +  S+F+CNIC D+A DP+VT CGHL+CW C++KWL++ S S       K CPVC
Sbjct: 11  NDTNNNDSSNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHLHSQS-------KDCPVC 70

Query: 118 KANISQTSLIPLYCHGPSRSDDEARKSQRDVIPPRPAAANSPSSPQQQQLHSNQQYPEFR 177
           KA I +  L+PLY  G S +D  ++      +P RP+     ++      H    +  F 
Sbjct: 71  KAVIEEDRLVPLYGRGKSSADPRSKSIPGLEVPNRPSGQRPETAQPPDPNHGFAHHHGFG 130

Query: 178 ------YASISSSNYLSPTMA---GILIPTI 200
                  A ++S+ + + T++   G LIP++
Sbjct: 131 GFMGGFAAPMASARFGNVTLSAAFGGLIPSL 154

[Close]

BLAST of Spo20870.1 vs. TAIR (Arabidopsis)
Match: AT2G23780.1 (RING/U-box superfamily protein)

HSP 1 Score: 93.2 bits (230), Expect = 4.100e-19
Identity = 42/115 (36.52%), Postives = 66/115 (57.39%), Query Frame = 1


		  
Query: 58  NTESESSQSSFDCNICFDVAHDPVVTRCGHLYCWACIFKWLNVQSSSSSEQTHQKACPVC 117
           N ++      F+CNICF++A DP+VT CGHL+CW C+++WL+         +H + CPVC
Sbjct: 16  NNDTNDQGGDFECNICFELAQDPIVTLCGHLFCWPCLYRWLH-------HHSHSQECPVC 75

Query: 118 KANISQTSLIPLYCHGPSRSDDEARKSQRDVIPPRPAA--ANSPSSPQQQQLHSN 171
           KA +    L+PLY  G +++D  +++     IP RP      + + P Q +  SN
Sbjct: 76  KAVVQDDKLVPLYGRGKNQTDPRSKRYPGLRIPNRPTGQRPETAAPPPQPEAASN 123

The following BLAST results are available for this feature:

BLAST of Spo20870.1 vs. NCBI nr
BLAST of Spo20870.1 vs. UniProtKB/TrEMBL
BLAST of Spo20870.1 vs. ExPASy Swiss-Prot
BLAST of Spo20870.1 vs. TAIR (Arabidopsis)

BLAST of Spo20870.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902205889\|gb\|KNA15303.1\|	8.3e-123	97.7	hypothetical protein SOVF_0994...	[more]
gi\|731345613\|ref\|XP_010684010.1\|	9.9e-76	77.0	PREDICTED: uncharacterized pro...	[more]
gi\|731366314\|ref\|XP_010695001.1\|	2.2e-75	66.3	PREDICTED: E3 ubiquitin-protei...	[more]
gi\|731366105\|ref\|XP_010694888.1\|	1.4e-74	76.4	PREDICTED: uncharacterized pro...	[more]
gi\|400131576\|emb\|CCH50976.1\|	4.6e-57	59.5	T4.15 [Malus x robusta]	[more]

BLAST of Spo20870.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9R703_SPIOL	5.8e-123	97.7	Uncharacterized protein OS=Spi...	[more]
A0A0J8BD21_BETVU	1.5e-75	66.3	Uncharacterized protein OS=Bet...	[more]
I7K8L3_9ROSA	3.2e-57	59.5	T4.15 protein OS=Malus x robus...	[more]
M1BPI1_SOLTU	5.1e-55	56.6	Uncharacterized protein OS=Sol...	[more]
Q6L4B3_SOLDE	2.0e-54	55.4	Polyprotein, putative OS=Solan...	[more]

BLAST of Spo20870.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
RMA3_ARATH	8.8e-32	39.4	E3 ubiquitin-protein ligase RM...	[more]
RMA1_ARATH	7.7e-28	38.4	E3 ubiquitin-protein ligase RM...	[more]
RMA1_CAPAN	5.0e-27	38.5	E3 ubiquitin-protein ligase RM...	[more]
RN185_CHICK	6.7e-16	37.2	E3 ubiquitin-protein ligase RN...	[more]
RN185_HUMAN	8.8e-16	42.5	E3 ubiquitin-protein ligase RN...	[more]

BLAST of Spo20870.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5


Match Name	E-value	Identity	Description
AT4G27470.1	4.9e-33	39.4	RING membrane-anchor 3	[more]
AT4G03510.1	4.3e-29	38.4	RING membrane-anchor 1	[more]
AT1G74990.1	1.1e-19	37.3	RING/U-box superfamily protein	[more]
AT1G19310.1	4.1e-19	34.4	RING/U-box superfamily protein	[more]
AT2G23780.1	4.1e-19	36.5	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 70..117 score: 1.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 70..118 score: 12
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10		coord: 57..130 score: 1.6
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 85..94 scor
IPR018957	Zinc finger, C3HC4 RING-type	PFAM	PF00097	zf-C3HC4	coord: 70..117 score: 5.4
None	No IPR available	PANTHER	PTHR12313	RNF5	coord: 1..244 score: 6.9
None	No IPR available	PANTHER	PTHR12313:SF2	E3 UBIQUITIN-PROTEIN LIGASE RMA3	coord: 1..244 score: 6.9
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 64..131 score: 1.49

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity