Spo27064.1 (mRNA)

Overview
NameSpo27064.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_02326 : 56590 .. 56946 (-)
Sequence length357
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTAGCAAGTTTGTTGTTATGTTAGTGGTCATGGGTGCCCTTATTTGCACCACCGTCGTCGATGCTAGGAAGCTCGGCGGTGGACTTGATGAGGAGAAAACCTTCCTACCGTCTGGTGGGAGTGGTGCGGCTGGTGGAGTTGGGGTAATCGGGGGAGGTGGTCTTGGTTTAGGTGTAGGTCTTGGTAATGCTGGACTCGGCGTTGGTAGTTTGTTTGGAGGTGGTCTTGGTGGTGGTGCTGGTGGTCTTGGTGGTGGTGTAGGAGGTCTTGGTGGTCTTGGTGGTGGTACTGGTGGTCTTGGTGGAAGTCCTGGCGGTCTTGGTGGTGGGTTTGGAAGTGGAGGCATTCCCTAG

mRNA sequence

ATGGCTAGCAAGTTTGTTGTTATGTTAGTGGTCATGGGTGCCCTTATTTGCACCACCGTCGTCGATGCTAGGAAGCTCGGCGGTGGACTTGATGAGGAGAAAACCTTCCTACCGTCTGGTGGGAGTGGTGCGGCTGGTGGAGTTGGGGTAATCGGGGGAGGTGGTCTTGGTTTAGGTGTAGGTCTTGGTAATGCTGGACTCGGCGTTGGTAGTTTGTTTGGAGGTGGTCTTGGTGGTGGTGCTGGTGGTCTTGGTGGTGGTGTAGGAGGTCTTGGTGGTCTTGGTGGTGGTACTGGTGGTCTTGGTGGAAGTCCTGGCGGTCTTGGTGGTGGGTTTGGAAGTGGAGGCATTCCCTAG

Coding sequence (CDS)

ATGGCTAGCAAGTTTGTTGTTATGTTAGTGGTCATGGGTGCCCTTATTTGCACCACCGTCGTCGATGCTAGGAAGCTCGGCGGTGGACTTGATGAGGAGAAAACCTTCCTACCGTCTGGTGGGAGTGGTGCGGCTGGTGGAGTTGGGGTAATCGGGGGAGGTGGTCTTGGTTTAGGTGTAGGTCTTGGTAATGCTGGACTCGGCGTTGGTAGTTTGTTTGGAGGTGGTCTTGGTGGTGGTGCTGGTGGTCTTGGTGGTGGTGTAGGAGGTCTTGGTGGTCTTGGTGGTGGTACTGGTGGTCTTGGTGGAAGTCCTGGCGGTCTTGGTGGTGGGTTTGGAAGTGGAGGCATTCCCTAG

Protein sequence

MASKFVVMLVVMGALICTTVVDARKLGGGLDEEKTFLPSGGSGAAGGVGVIGGGGLGLGVGLGNAGLGVGSLFGGGLGGGAGGLGGGVGGLGGLGGGTGGLGGSPGGLGGGFGSGGIP
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo27064Spo27064gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo27064.1Spo27064.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo27064.1.CDS.1Spo27064.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo27064.1.exon.1Spo27064.1.exon.1exon


Homology
[Close]
BLAST of Spo27064.1 vs. NCBI nr
Match: gi|902116728|gb|KNA03914.1| (hypothetical protein SOVF_204120 [Spinacia oleracea])

HSP 1 Score: 179.5 bits (454), Expect = 3.500e-42
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 1 

		  

Query: 1   MASKFVVMLVVMGALICTTVVDARKLGGGLDEEKTFLPSGGSGAAGGVGVIGGGGLGLGV 60
           MASKFVVMLVVMGALICTTVVDARKLGGGLDEEKTFLPSGGSGAAGGVGVIGGGGLGLGV
Sbjct: 1   MASKFVVMLVVMGALICTTVVDARKLGGGLDEEKTFLPSGGSGAAGGVGVIGGGGLGLGV 60

Query: 61  GLGNAGLGVGSLFGGGLGGGAGGLGGGVGGLGGLGGGTGGLGGSPGGLGGGFGSGGIP 119
           GLGNAGLGVGSLFGGGLGGGAGGLGGGVGGLGGLGGGTGGLGGSPGGLGGGFGSGGIP
Sbjct: 61  GLGNAGLGVGSLFGGGLGGGAGGLGGGVGGLGGLGGGTGGLGGSPGGLGGGFGSGGIP 118
[Close]
BLAST of Spo27064.1 vs. NCBI nr
Match: gi|731351132|ref|XP_010686879.1| (PREDICTED: acanthoscurrin-1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 80.1 bits (196), Expect = 2.900e-12
Identity = 75/111 (67.57%), Postives = 86/111 (77.48%), Query Frame = 1 

		  

Query: 12  MGALICTTVVDARKLGGGLDEEKTFLPSGGSGAAGGVGVIGGGGLGLGVGLGNAGLGVGS 71
           MGAL+CTT++DARKL GG+DE+K+ LPSG    AGG+G+  GGGLGLG+GLG+ GLG+GS
Sbjct: 1   MGALLCTTIIDARKLVGGVDEQKSILPSGPLLPAGGLGIGTGGGLGLGLGLGHVGLGLGS 60

Query: 72  LFGG--GLGGGA-GGLGGGVGGLGGL-GGGTGGLGGSPGGLGGGFGSGGIP 119
            FGG  GLGGGA GG GGG GG GGL GGG  G GG  GG GGG GSG IP
Sbjct: 61  GFGGGVGLGGGAGGGGGGGFGGGGGLGGGGLAGGGGFGGGAGGGLGSGIIP 111
[Close]
BLAST of Spo27064.1 vs. UniProtKB/TrEMBL
Match: A0A0K9Q9I2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_204120 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 2.400e-42
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 1 

		  

Query: 1   MASKFVVMLVVMGALICTTVVDARKLGGGLDEEKTFLPSGGSGAAGGVGVIGGGGLGLGV 60
           MASKFVVMLVVMGALICTTVVDARKLGGGLDEEKTFLPSGGSGAAGGVGVIGGGGLGLGV
Sbjct: 1   MASKFVVMLVVMGALICTTVVDARKLGGGLDEEKTFLPSGGSGAAGGVGVIGGGGLGLGV 60

Query: 61  GLGNAGLGVGSLFGGGLGGGAGGLGGGVGGLGGLGGGTGGLGGSPGGLGGGFGSGGIP 119
           GLGNAGLGVGSLFGGGLGGGAGGLGGGVGGLGGLGGGTGGLGGSPGGLGGGFGSGGIP
Sbjct: 61  GLGNAGLGVGSLFGGGLGGGAGGLGGGVGGLGGLGGGTGGLGGSPGGLGGGFGSGGIP 118
[Close]
BLAST of Spo27064.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BSK1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g185920 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.000e-12
Identity = 75/111 (67.57%), Postives = 86/111 (77.48%), Query Frame = 1 

		  

Query: 12  MGALICTTVVDARKLGGGLDEEKTFLPSGGSGAAGGVGVIGGGGLGLGVGLGNAGLGVGS 71
           MGAL+CTT++DARKL GG+DE+K+ LPSG    AGG+G+  GGGLGLG+GLG+ GLG+GS
Sbjct: 1   MGALLCTTIIDARKLVGGVDEQKSILPSGPLLPAGGLGIGTGGGLGLGLGLGHVGLGLGS 60

Query: 72  LFGG--GLGGGA-GGLGGGVGGLGGL-GGGTGGLGGSPGGLGGGFGSGGIP 119
            FGG  GLGGGA GG GGG GG GGL GGG  G GG  GG GGG GSG IP
Sbjct: 61  GFGGGVGLGGGAGGGGGGGFGGGGGLGGGGLAGGGGFGGGAGGGLGSGIIP 111
[Close]
BLAST of Spo27064.1 vs. TAIR (Arabidopsis)
Match: AT4G29020.1 (glycine-rich protein)

HSP 1 Score: 47.0 bits (110), Expect = 9.400e-6
Identity = 62/128 (48.44%), Postives = 73/128 (57.03%), Query Frame = 1 

		  

Query: 5   FVVMLVVMGALICTTVVDARKLGGGLDEEKTFLPSGGSGAAGGVGVIGGGGLGLGVGLGN 64
           F+V L+V  A+  T     + +G GLD++K F+   G G A G+G  GG G GLG   G 
Sbjct: 9   FLVALMVSQAVTATRPAPTKNVGAGLDDQKNFVAFAGVGGAAGIGGAGGVGAGLGGVAGG 68

Query: 65  AGLGVGSLFGGGLGGGAGGLGGGVGGLGGLGG---------GTGGLGGSP------GGLG 118
            G   G L  GG+GGG GGLGGGVGGLGGLGG         G GG+GG P      GGLG
Sbjct: 69  VGGVAGVLPVGGVGGGIGGLGGGVGGLGGLGGLGGGSGLGHGVGGIGGDPGIGSGIGGLG 128
The following BLAST results are available for this feature:
BLAST of Spo27064.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 2
Match NameE-valueIdentityDescription
gi|902116728|gb|KNA03914.1|3.5e-42100.hypothetical protein SOVF_2041... [more]
gi|731351132|ref|XP_010686879.1|2.9e-1267.5PREDICTED: acanthoscurrin-1 [B... [more]
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BLAST of Spo27064.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 2
Match NameE-valueIdentityDescription
A0A0K9Q9I2_SPIOL2.4e-42100.Uncharacterized protein OS=Spi... [more]
A0A0J8BSK1_BETVU2.0e-1267.5Uncharacterized protein OS=Bet... [more]
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BLAST of Spo27064.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo27064.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT4G29020.19.4e-648.4glycine-rich protein[more]
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