Spo16374.1 (mRNA)

Overview
NameSpo16374.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
Description4Fe-4S ferredoxin, iron-sulfur binding protein
LocationSpoScf_02527 : 14687 .. 16555 (-)
Sequence length322
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTAGTTAGGTTTCGATTAATAGAACAAAGTTGAACTAAAAAGCAATAAAAATAAAACGTATCCTCTTCTTAGATGTTTTCAGAATAATTGCTTTCAGTGAAGTGTATTTATGGTCAATTTCTGTTGCTGTTTTTTTTCTTTTTTCTATCTTCTTTTGTTTCTATCAATAGTTAACTTTCACAGAATTTCTTCAATTGGCTGGTGGCACAAATGCTCACACAATAAAAGGGTTGAAGGAACACAGACTTTTTCAAACCAGGAGTAATATTCTGACCCTTTAAGTGTCCTTATTGGTCTAGTTTTGTCTTTAATTGAAATACTTAACCCTTTATTAAACCCGTTTTGCAGGGAACCCGGATGATGAGATCTTGACCGGTGAAATATCTAGTTCATGCAATTCTCTAATTGGTGGTATGGCATATGGTGGCTATGCTAGGAAGGTACGTACAACTATATTACTGAAATGGCAAGGTGGCCAAATAATGTAAATTTGTGTATAAATTTCTATTTGGAGAAACATATTCTTAATAAGACTTTAAAATGGAAAGATGGCTAAAGAAAACCAGCTTCTACTTATCATCTTGTAGCTTCTTTCTTGTTGTCATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTTGCTCTAGAGAATTTTTACATAACCTGTCTGTCTGCACCTCCCTGCTATAAACTGAAAATTCTACATTTATTGGATCCAAAATGAAATGTCAAGTGAACATACAGACATACTGACATAGTCATGTCTGAATATAGAAGAGCTAGGGTTATCTTAAGTAAATGAGCCTGAGTAACTTAGCAGAAAAGCAGTGGGTGAACTTTTCAGACTGCAGCAAATCAAAGTACACATGTATCATAGTGAATCTTTTCAGACTTTTTCCCTATTTCCTAGATCTTCCCTTGTCCCTAAGCATGTTAACCTTCATTACTACTGAAGTCATTCATTCTCCATTAGGTGTACTTATGCTAGATATGACGCGACTACATTATATACACAGAGTACATGGTAATGATGATTACTAAGGCATTTATTGAGTCTGCTTGACATAAGTCATGAGTCTGCTTACTGAGTCTGCTTACTAAGGCATTTGCTGAGTCTGCTTGGCATTTACATAAGTCAGAGTACATGGTAATGATGATTACTAAGGCATTTACATACGACTTGGGTGTTGTAGTTGACATGCTGACCCACTTGGAGGTAATTCTCTTGGGTTTGCTTGAATATTTAAAGGTCTCCGCTAATTGTTTGACAAACGTTAGAATTTCTGTTGCTTTAATCTTTAGTATGCTATGGGATTGCGTTGTAACAGATCAATCCAAGATTTTGTAGGCTTATTGATAAACATTTTCATTGCTCTAACTATAGTGAGAATGTGAATTTGATGGTACTGAAATTTTATCCCTGTACCGTGCTGCAATTATTTGCTTATATTGTCGAGTAATAGCAAAGATTTGCTTCCATTCCGGTTACTCTTTCTTGATATGTACACAGCGTGACTCTCTACTCAGGTACAAAGGTGTGAAGACTCTAGACCTCTAAAAATTGAGTTGAGAGGAAAATGAACAGTGTGATTCGGATGCATACTGTTTGTGCTAGAGCTTTTGGACCTGGTAAAAGTTACAGATACTCAATTTATCTATCTTGGGGTCAATTTGACAGTAACTGGCATATTAGGGAAATGTGTATCTCATGGAGTCATAAGTGTCGTAGGAAAGTTAGACGCATTGAATTTAATTTGAATGCATCTCATACTGAGCCTATGGCCTTTGTAGCAGATAGAGGAAGGTTTAATGACAAGTTCAATAAAAG

mRNA sequence

ATGTTAACTTTCACAGAATTTCTTCAATTGGCTGGTGGCACAAATGCTCACACAATAAAAGGGTTGAAGGAACACAGACTTTTTCAAACCAGGAGGAACCCGGATGATGAGATCTTGACCGGTGAAATATCTAGTTCATGCAATTCTCTAATTGGTGGTATGGCATATGGTGGCTATGCTAGGAAGGTACAAAGGTGTGAAGACTCTAGACCTCTAAAAATTGAGTTGAGAGGAAAATGAACAGTGTGATTCGGATGCATACTGTTTGTGCTAGAGCTTTTGGACCTGATAGAGGAAGGTTTAATGACAAGTTCAATAAAAG

Coding sequence (CDS)

ATGTTAACTTTCACAGAATTTCTTCAATTGGCTGGTGGCACAAATGCTCACACAATAAAAGGGTTGAAGGAACACAGACTTTTTCAAACCAGGAGGAACCCGGATGATGAGATCTTGACCGGTGAAATATCTAGTTCATGCAATTCTCTAATTGGTGGTATGGCATATGGTGGCTATGCTAGGAAGGTACAAAGGTGTGAAGACTCTAGACCTCTAAAAATTGAGTTGAGAGGAAAATGA

Protein sequence

MLTFTEFLQLAGGTNAHTIKGLKEHRLFQTRRNPDDEILTGEISSSCNSLIGGMAYGGYARKVQRCEDSRPLKIELRGK
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo16374Spo16374gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo16374.1Spo16374.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo16374.1.CDS.4Spo16374.1.CDS.4CDS
Spo16374.1.CDS.3Spo16374.1.CDS.3CDS
Spo16374.1.CDS.2Spo16374.1.CDS.2CDS
Spo16374.1.CDS.1Spo16374.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo16374.1.utr3p.2Spo16374.1.utr3p.2three_prime_UTR
Spo16374.1.utr3p.1Spo16374.1.utr3p.1three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo16374.1.exon.5Spo16374.1.exon.5exon
Spo16374.1.exon.4Spo16374.1.exon.4exon
Spo16374.1.exon.3Spo16374.1.exon.3exon
Spo16374.1.exon.2Spo16374.1.exon.2exon
Spo16374.1.exon.1Spo16374.1.exon.1exon


Homology
[Close]
BLAST of Spo16374.1 vs. NCBI nr
Match: gi|902086902|gb|KNA03235.1| (hypothetical protein SOVF_211140 [Spinacia oleracea])

HSP 1 Score: 108.6 bits (270), Expect = 5.000e-21
Identity = 50/57 (87.72%), Postives = 54/57 (94.74%), Query Frame = 1 

		  

Query: 7   FLQLAGGTNAHTIKGLKEHRLFQTRRNPDDEILTGEISSSCNSLIGGMAYGGYARKV 64
           FLQLAGGTNA T+KGLKEH LFQTRRNPDD ILTGEIS+SCNSLIGG+AYGGYARK+
Sbjct: 309 FLQLAGGTNAQTVKGLKEHGLFQTRRNPDDGILTGEISNSCNSLIGGIAYGGYARKI 365
[Close]
BLAST of Spo16374.1 vs. NCBI nr
Match: gi|731322144|ref|XP_010671730.1| (PREDICTED: uncharacterized protein LOC104888450 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 88.6 bits (218), Expect = 5.400e-15
Identity = 41/57 (71.93%), Postives = 47/57 (82.46%), Query Frame = 1 

		  

Query: 7   FLQLAGGTNAHTIKGLKEHRLFQTRRNPDDEILTGEISSSCNSLIGGMAYGGYARKV 64
           FLQLAGGTNAHT+ GLKE  LFQ RRN +D IL  ++S SCNSLI G+AYGGYARK+
Sbjct: 309 FLQLAGGTNAHTVNGLKEKGLFQIRRNLEDGILAEQMSGSCNSLISGIAYGGYARKI 365
[Close]
BLAST of Spo16374.1 vs. NCBI nr
Match: gi|870865205|gb|KMT16272.1| (hypothetical protein BVRB_3g054230 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 88.6 bits (218), Expect = 5.400e-15
Identity = 41/57 (71.93%), Postives = 47/57 (82.46%), Query Frame = 1 

		  

Query: 7   FLQLAGGTNAHTIKGLKEHRLFQTRRNPDDEILTGEISSSCNSLIGGMAYGGYARKV 64
           FLQLAGGTNAHT+ GLKE  LFQ RRN +D IL  ++S SCNSLI G+AYGGYARK+
Sbjct: 325 FLQLAGGTNAHTVNGLKEKGLFQIRRNLEDGILAEQMSGSCNSLISGIAYGGYARKI 381
[Close]
BLAST of Spo16374.1 vs. NCBI nr
Match: gi|1021052077|gb|KZN09855.1| (hypothetical protein DCAR_002511 [Daucus carota subsp. sativus])

HSP 1 Score: 75.9 bits (185), Expect = 3.600e-11
Identity = 37/57 (64.91%), Postives = 44/57 (77.19%), Query Frame = 1 

		  

Query: 7   FLQLAGGTNAHTIKGLKEHRLFQTRRNPDDEILTGEISSSCNSLIGGMAYGGYARKV 64
           FLQLAGGTNAHT+ GLK+HRLFQT     D+ +    S S N+LIGG+AYGGYARK+
Sbjct: 311 FLQLAGGTNAHTVDGLKKHRLFQTTTTSKDKNVHSS-SPSSNALIGGVAYGGYARKI 366
[Close]
BLAST of Spo16374.1 vs. NCBI nr
Match: gi|596298266|ref|XP_007227463.1| (hypothetical protein PRUPE_ppa006159mg [Prunus persica])

HSP 1 Score: 75.5 bits (184), Expect = 4.700e-11
Identity = 40/60 (66.67%), Postives = 47/60 (78.33%), Query Frame = 1 

		  

Query: 7   FLQLAGGTNAHTIKGLKEHRLFQT---RRNPDDEILTGEISSSCNSLIGGMAYGGYARKV 64
           FLQLAGGTNAHT+ GLK+  LFQT    RN  DE LTG  SSS +++IGG+AYGGYARK+
Sbjct: 320 FLQLAGGTNAHTVDGLKKVGLFQTTSFHRNSRDETLTG-TSSSVHAIIGGVAYGGYARKI 378
[Close]
BLAST of Spo16374.1 vs. UniProtKB/TrEMBL
Match: A0A0K9Q7L3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_211140 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 3.500e-21
Identity = 50/57 (87.72%), Postives = 54/57 (94.74%), Query Frame = 1 

		  

Query: 7   FLQLAGGTNAHTIKGLKEHRLFQTRRNPDDEILTGEISSSCNSLIGGMAYGGYARKV 64
           FLQLAGGTNA T+KGLKEH LFQTRRNPDD ILTGEIS+SCNSLIGG+AYGGYARK+
Sbjct: 309 FLQLAGGTNAQTVKGLKEHGLFQTRRNPDDGILTGEISNSCNSLIGGIAYGGYARKI 365
[Close]
BLAST of Spo16374.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CRP9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g054230 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 3.700e-15
Identity = 41/57 (71.93%), Postives = 47/57 (82.46%), Query Frame = 1 

		  

Query: 7   FLQLAGGTNAHTIKGLKEHRLFQTRRNPDDEILTGEISSSCNSLIGGMAYGGYARKV 64
           FLQLAGGTNAHT+ GLKE  LFQ RRN +D IL  ++S SCNSLI G+AYGGYARK+
Sbjct: 325 FLQLAGGTNAHTVNGLKEKGLFQIRRNLEDGILAEQMSGSCNSLISGIAYGGYARKI 381
[Close]
BLAST of Spo16374.1 vs. UniProtKB/TrEMBL
Match: A0A169WT74_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_002511 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 2.500e-11
Identity = 37/57 (64.91%), Postives = 44/57 (77.19%), Query Frame = 1 

		  

Query: 7   FLQLAGGTNAHTIKGLKEHRLFQTRRNPDDEILTGEISSSCNSLIGGMAYGGYARKV 64
           FLQLAGGTNAHT+ GLK+HRLFQT     D+ +    S S N+LIGG+AYGGYARK+
Sbjct: 311 FLQLAGGTNAHTVDGLKKHRLFQTTTTSKDKNVHSS-SPSSNALIGGVAYGGYARKI 366
[Close]
BLAST of Spo16374.1 vs. UniProtKB/TrEMBL
Match: M5XRG4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006159mg PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 3.300e-11
Identity = 40/60 (66.67%), Postives = 47/60 (78.33%), Query Frame = 1 

		  

Query: 7   FLQLAGGTNAHTIKGLKEHRLFQT---RRNPDDEILTGEISSSCNSLIGGMAYGGYARKV 64
           FLQLAGGTNAHT+ GLK+  LFQT    RN  DE LTG  SSS +++IGG+AYGGYARK+
Sbjct: 320 FLQLAGGTNAHTVDGLKKVGLFQTTSFHRNSRDETLTG-TSSSVHAIIGGVAYGGYARKI 378
[Close]
BLAST of Spo16374.1 vs. UniProtKB/TrEMBL
Match: G8E4B6_9ROSI (4Fe-4S ferredoxin iron-sulfur binding protein (Fragment) OS=Dimocarpus longan GN=4Fe-4S FD PE=2 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 7.300e-11
Identity = 38/60 (63.33%), Postives = 46/60 (76.67%), Query Frame = 1 

		  

Query: 7  FLQLAGGTNAHTIKGLKEHRLFQ---TRRNPDDEILTGEISSSCNSLIGGMAYGGYARKV 64
          FLQLAGGTNAHT+ GLK+  LFQ   T+ + D E LT  + SS +SLIGG+AYGGYARK+
Sbjct: 2  FLQLAGGTNAHTVDGLKKEGLFQTSFTQHSRDAEELTAILLSSSSSLIGGIAYGGYARKI 61
The following BLAST results are available for this feature:
BLAST of Spo16374.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902086902|gb|KNA03235.1|5.0e-2187.7hypothetical protein SOVF_2111... [more]
gi|731322144|ref|XP_010671730.1|5.4e-1571.9PREDICTED: uncharacterized pro... [more]
gi|870865205|gb|KMT16272.1|5.4e-1571.9hypothetical protein BVRB_3g05... [more]
gi|1021052077|gb|KZN09855.1|3.6e-1164.9hypothetical protein DCAR_0025... [more]
gi|596298266|ref|XP_007227463.1|4.7e-1166.6hypothetical protein PRUPE_ppa... [more]
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BLAST of Spo16374.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9Q7L3_SPIOL3.5e-2187.7Uncharacterized protein OS=Spi... [more]
A0A0J8CRP9_BETVU3.7e-1571.9Uncharacterized protein OS=Bet... [more]
A0A169WT74_DAUCA2.5e-1164.9Uncharacterized protein OS=Dau... [more]
M5XRG4_PRUPE3.3e-1166.6Uncharacterized protein OS=Pru... [more]
G8E4B6_9ROSI7.3e-1163.34Fe-4S ferredoxin iron-sulfur ... [more]
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BLAST of Spo16374.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo16374.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021039Iron-sulphur binding protein LdpA, C-terminalPFAMPF12617LdpA_Ccoord: 5..63
score: 5.3