Spo08503.1 (mRNA)

Overview
NameSpo08503.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_02699 : 1351 .. 8010 (-)
Sequence length603
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGCAAATGCCTCTATCAGCCAGGACAAGTGCTCCACCTTCTAGAGTCCATTCCCGAGTCACGGGATCTTTATGCACTGCTGCTGTGAGCCCTACAGCTGAAGCTCCTTTACCTGTAGTATAGACAGCCCTCTGTCCAGTTTTCTCAACATACCTGAACCATAAATGGCCCAAAGAGCATTAAAATCATAAAATACTGCAGCGCTAATCAAGCCACGATGAAAAAATATGCAGTGATTTACTTGAGAAACTGAGACTTCGCTGTTCCTGGATCACCAAGTAGAAGCACATTTATATCACCTCGCAGACGGTGCTTTCCTTGAACATTTTTTTCTTGGCCTCCAAACATTGCTAGTGCAAGAGCAGTCTTGATATCTTCGTGGCCATAGATAGATGGAGCTATGGACTTAACAATCTAAGGAAAAGAAACAGGTAAAAAAAAGTGTCCTACTGTAAAAGTGATGTATCATAAAGTGGTCAGCAGTTTCGCATACCCTTTCTCCTATCCTGGGGTCTTTGGATAACTTCTCAATTTCTTCTTTATCTTCTTGAGTCAGTTTGTAAGCAGAAAAAAGATCCTGCTTTTTGGCGACATAATTTGCTTCAACTACTGTAGCAAAGACTGGAAAGCCATTTTTCGTGTTCAATGCCAAGTCGAAATTATTTGTATAAATCCCAGTAACCTCCTGAGTTACATAAAAGAGGACAGAGTCAGAACTGAGGATAGGATTTTCCACAATAAAGAGAGTACATTGATAACAAAAACATACAATTTCTTCTCCAGGTCGAGCACAATCTATCAGATCATTCAATAATATAACTTCCTTGTATCTTGGAAGTCGACCTGCTGGGACAATTCCTGGGCTTTCTTGGAGAGTAAGCTTTTGGTAATTCCTGTATATTGTCTGTAGCATGTAAAGGTGAGATAATACTCACTAAGCATTTAGTTGCCTTTATAATCAAACTTCTGACATCTCTCACCTGCTCAACATTTACGGTAAATGGTCCCTTCGACTGACATTCTGGGCAAGAGCCAACCTTAACTTCTGAAAAGGAGTTCTGGAAAAAGGGCCCCAGGACAGCCCCACATTTGTTGCAGTCATACTTCACCTGCTGCAGCTGAGGGAAGACCCCAGAGCGACGAGTAACCACTCCCCCAATTCGAATCATGGTGCTCAAGTGTATCTGTCTGTAACAAACAAAAAGGAAGAGAGTTAGAACTCTACAATCATTCTAAAGCAAGGATACAGATAAGTAAATAGCCTCATTCTACCTTATATTGCGAATCTGGTCATAAACTGGCAGATTTGTGATGCGGACATAGATCTTCTGATGTATATTTTTGTAATTTGGATGTAAATCAAAAACAACCTTTTTAGCAATTTCCTCCATGACCTCTAAGACAGATTGCGGAGCATCAGCCAGCCAAATGGCAATATTGGGATGGACGTTGATGAACTGTTTGTAATCAATCTCCAAACTACATTTGTTTGCTGTAATAATGAATTTAGATATTAAAAACAAGTACAAAATGATAAATGAAAATTCTCTAATGATCAAATAACTCATTATGACAAAACACTTTCAAGATTACAATCCATGAACTAATTATAACTATGAACCTCGATAGCATAGCATAGCATAAAATAAAATAAAAAGTCTATCAAGATGTCATACCCGACACCATCTCATTTATCAGTCTAACATAAACGTAGTCTTCTCCTTGTTCATTCCTTGGGTTTATGTAAGAAAGTACGAAGTCCTTGAATTTTTTGCCAATGAAACGACGCACTTCATCTCTTGTCACCCACTCTCTCAATGTTCCCTGAACTGTGTACATCTCATAATCCTCTTCCCCATCATCATCATCCTGAAAAATAAGCTCTCGCGTTTAAATTAAGGAATAAAGGAATTATCAATCAGTAATGAGCAGATGCCAAGAGATAATATAGACACGAGATAGTGAGATACCTCATCTGGATCATCATCTGTTTGATCAGTCATGGGTACATCCTCTCTTGAGTGTCCATGCTGTGATCTTCCAGGTGAGCTTTGCTCAGCATCTGTGTCATCATTGCTACGTCCTGCAGGAAGACGGAAATCTGCTCGAGACCTTTTTGAAGGCCTATAACTATCATCGTCTGTATCTGCAGTCAATACACTAATCACTCAGAGATAATGAACTACTAGAGACTCTGTCCCACATAGGGCAAACTAGACTGTAAGTATTACAGTAGAGTTTTGAAAGGTTTTCATTCTTCAACACACTTGATACCTTGAATACAATATTCTCTAAAGAAATCAAACCAACATATTTATAAGCCATATTTCTTACTTAAGCTAGAAAGCTCAAAGTATAACATAGCACATAGATAAGCATATCCGAGCCACAACACAAAAGCTATGTTTATCTATTACGGAGTAGTGCATCATAATACCAAAAACCCTTTTATCATATGCGTCACTCAGTTGAGGCATTCAATTGCTAACCCTATAGGCCAAGTTCATATCATAACTTAACAAACTAGACATAAATATGAGAAACCATACTTTTGACATAAAACTCACCCCCCCCCAAATTCACCATACTAAATTAAAACCAACTTCACCAGAACCAACATAGCTGTTCGCGAACTCCAGTCTTGACCTTATGATCAAAGTTGATAACATTTCAAATTCAATCCCCTCCCCCCTGTCTCAAATTTTCAATTAATCAACATAAAGATAACTGCTTCAAGAAAAAATAAACAGAAAATATGAACTACTATTGCATAAGTTGCCAGTGGTGAAAGATTACCATTATCATGAAGAAGCTCAGGAAGTTTGCGATTATTTGAAACCCGAGCATCGCGCGATTCAAGCTCCATTTCAGCGGCATTACGATCCTGCAGAATCTGACTCAAATCTCTCTCATCTTCCAATGAATCATTCAACCCCTCCTCTTCATACTGATCTTGCTCTCCCAAACCCCGGTAATCACTACAATTCCACAACCCCAAAAATGACAAAATTGAACTCCTCAAAATGTAAATTAATTTTATTTATTTTTTTAAAGAATAATAAAGAAAAGAAATTACTTGAGAAAGTCGTCATTGTAAAGATCTTCTCCTTCTTCCTCCTCCTCAACATCCTCAGGTTCGTCGCGAACGATTTCTGGATCGACAGCGGCTTCTTCATCGGTGTCGAAATCGTCGGAGAAGTTGCTGGTGTTGGTGTTGGGGGGAAGTTGGTCGGTTGGGAAGCCAGCGGAGGTTGGAGAGTCTGGTGTCGTTGGTGGGTTGTCGGCCGAGTTATCTGCCATTTTTGCGCTCTCCCCTTTCTCTCTCCCCTTTCTCTTTAGGGCGGTGTGTTTGGCGGAGTGATGGATTTTAGTAAGAACACTCACTTACTCAAAAGGGATTAATTAGGGCTTGAAGTTGTATGGCGGGAAATGTTGGCGCCAAAACTGTACGTGGGAGGTGAGGGGTTGGCCCTAAGGGCTAAGGGGCGTTTGTGGGATTCACCGTCTCGAAACATTATTTTAACACAAAGAATAAGATTATATTACGTAAATAACGTTTTTACAAAATAGGACATTCCTCCAGGGACTTTAAACCCGCTATACTCAAACCCGTTTTTACATTCTTGTCTTTGATATCCCTCTCCGTCTTATTTAAGTTTGCCACACTCGTTGCCCCCAAAGTACAAAGTAGTTGTAATAATAATATCTACACAAAAGACTACCCAAAAACATCCTAAGCCTGACATATGTATCCCATGTGTGCACATTCAAGCTTGAGGATGACCAAACTTCCAACTCCTTAGTCTCTATCTGCTACTGCTGCTCATTCACTACATTCTTGTCTTTGATATCCCTCTCCGTCTTATTTAAGTTTGCCACACTCGTTGTCACATTGGTTGGGATTGTACCAAACAAGATATGTGTTGTGACTGTCTACGGGGAAGAAAATGACGTTGTAGCCGCCTCTAGATCAATAACCCCTAGTGTATTTTGTCCTGCTACTCCTGCATCCATATTTGGTCCTAGGAGCTCCTTCAACCCTCAATGTCACCTTGATAAGCAATGCGTGCAAATGGTGGAGGATTTAAAAACATTTTGTGGCCAAAAGCCATACTGAATGCATATTGAGCAAGGCAATGAGCCACCTTGTTCGACCCTCGTGGGATGTGAGTAAATTCTATGGACCTGAATCTGCTCATGAGACATGCAACATCATTAGTTACTGGTGAGAGCTCATGATGGTACGTGTCATCAAGGTTTTTGAGGAGTTTCGCCAAAATCTCCGCATCCGTTTCCAACTCTAGATTTTGAATATCATAACCCACTCCCATTGTGAGTCCCTCACGAACTGCATAAAGCTCCGCAACCAAAGGTGTTATAGCATCATACTTACTTGAGAAGCCCATATACCAATTCCCAGAGACCCCCTAAACCCCCCACCCCTCCCCCCTCCTACTTCATTTTGTTCCTTCCAACTACCATCAACATTTAGCTTCAAGTAGTCAAAAGCAGGTGGGAACCAAGTTGGTTTAGGCCCTTTAGCAACTTCCTTTCCCTTCCCCTGTAGATATGAGAAGTGTAAGAGTGGTCCATAAACAAAGCATTATAAATAGAGAAAGGTTTAGTCATCTTTAAATTGAATACTACTTTAGCAATCCATATATGCCAAATTGTTGTACTGAACAAAGCTTTCCAGTTATGGTGTTGAGACAAATTATAAGACAACCCATTCTTCCAATCCGTGTTAAAAAAACTTTGCCAAATCTATATTAGAAGCAGAATTAACTCTTTGAAATATGTAATTCCAAATTATTGAAGATTTCCAACAGTCTCAAAAAGATGCAAATGGCTTTTTGGGTTATCCTGGCATCTTACACATATAGGAGAAATGAAATCCAAAATATAAGAGAGTTGTTGAGCCACATGCAGAATCTCATTGCAACAATTACACAATAGAATTTTGTATTTAAAAGGGGATTTAATTTTCCATAAGGATTTCTAAAGGACAGTAGAGGGGGAGGGTTGATTAGTAAGGGTTAAATTAGTGGAAAGAGAATAAGCATACTAAATATTGAAAATGTCGTTCTTGCTATGGGTCCATCTAATGTAATCCTTAGTGTTTCTGTTTTTTGAAAGTGGTACACTTTTAATCAAGTTACAAATGTGCATCGGAAGGTAATCCTTTATTTTGTCGATATTCCAAGAACCATCTCTAATAATGTCCTTTACAAACTAGTGACTTATTTTGTCCGTAATATCTTTTGTAATCAATTTGTAAAGTGGCTCCGGGCCCACCCAATGATGATACCGTCCCAAAACTTGTTTTTGTTTGACAATTGAAAGTTTCGGTTCTTACATTTTCATGAATAGTAACCGTATTGCTTGAACTGGTTTGTTTGAATGGTTAACCGTAGTTTCGGAACGAGTACCTGGTTAATCATAAATTGCTTCTCAGTTTTTTTTATTTATTGTTTGTACCGTATCCTAACACTTATAAAGTCTCATACTTTGATTACTATTCACACAATAGTGAATTACCTGAATTACCCAATTTCCTTCATGTTTATTTTTTTGTCTTTTCCTTAATAATAGAGTACTTACGTTTATAACATTTGCCTTATCAATGTTGCCACGTTTTTCCCCTTTATCTGAGATGAGATCCTCAGTTCCCCATCCCCTGCCATTGTTGAACCAAGCCCTCGTCTCTCCTCTCTCCTCCAAACCCTAACTTTTCTCTCTCCTTGAAAAGTCCTTCGATCATCACCAAAACCTCGCCTGCCACCTAAATCTCGCACTCGGTACTCTTTTTTTTTCTCTCCCTCTATATTTCCATTTCGTTAAGCTTAGTGTTTCAGATGAATTGATAGCTAGTGCCCGTTTTATGTTTTTTCTGGGTTTGAAGCAGATTTGATTGATTTTGATTCCAAAAAATTTGCAACTTTCATCAAATTTTGAAGGGATTTGATTCAAAAGTTTTAGACTTTGGAGTATTTCCAATAATTCGCACACGGTAGATGAATTTAGGGGAAATGAATTGGTTTAATTTGTTTTTAATTTGGGGTTTTGGGGTGTAAGTGATTGTAATAAAGTAGGAATTTTTCTTAATTATCAGTGCCATTATGTGCTTTTTTTTAAGTGGCTGATGATGAACTAGGGTTTGTGTCGAGTAACGATCTTGAATATGCGTATTTATTTGATTTTGGTTGATTGTTTTTGTTGAGATTTTGTGAAATGGGTTTTATGAGTTTGGCAATTTGAGTTGCGTGGTGAACGAGTTTTCACTTCTTTCATATTCGAGGGTATGAATGTGGATTGATTTTTGGTGTACCTACATTGAGTTAATTGAACAATGATATTGCTTGATTGGAGATGAATTTGAAGCTCGTATTGATTTTGTTTATCAAGAATATAGGAGGAGTTTCTAAACTGGCATATTGAATAGCTGGTTTGGCTAAAGGTTTTATGGAATTATATGATCATTATCATTTTTGGGGTTTAGACTTATGAGGGTTTCTTTTGGATATATACAGGTTACATGTACTAGCAACGGCTGGAGATGTTTTTGGGCGCCTCATATTTTCACCTTCTATTTCTGTTGACAGTTCGTATAATCCCCGACTAACAGGGAAACCATCTGCCTTGCCAGCCCCTAAGTTT

mRNA sequence

ATGAGGCAAATGCCTCTATCAGCCAGGACAAGTGCTCCACCTTCTAGAGTCCATTCCCGAGTCACGGGATCTTTATGCACTGCTGCTGTGAGCCCTACAGCTGAAGCTCCTTTACCTGTATTGCCAGTGGTGAAAGATTACCATTATCATGAAGAAGCTCAGGAAGTTTGCGATTATTTGAAACCCGAGCATCGCGCGATTCAAGCTCCATTTCAGCGGCATTACGATCCTGCAGAATCTGACTCAAATCTCTCTCATCTTCCAATGAATCATTCAACCCCTCCTCTTCATACTGATCTTGCTCTCCCAAACCCCGAAAAGAAATTACTTGAGAAAGTCGTCATTGTAAAGATCTTCTCCTTCTTCCTCCTCCTCAACATCCTCAGGTTCGTCGCGAACGATTTCTGGATCGACAGCGGCTTCTTCATCGGTGTCGAAATCGTCGGAGAAGTTGCTGGTGTTGGTGTTGGGGGGAAGTTACATGTACTAGCAACGGCTGGAGATGTTTTTGGGCGCCTCATATTTTCACCTTCTATTTCTGTTGACAGTTCGTATAATCCCCGACTAACAGGGAAACCATCTGCCTTGCCAGCCCCTAAGTTT

Coding sequence (CDS)

ATGAGGCAAATGCCTCTATCAGCCAGGACAAGTGCTCCACCTTCTAGAGTCCATTCCCGAGTCACGGGATCTTTATGCACTGCTGCTGTGAGCCCTACAGCTGAAGCTCCTTTACCTGTATTGCCAGTGGTGAAAGATTACCATTATCATGAAGAAGCTCAGGAAGTTTGCGATTATTTGAAACCCGAGCATCGCGCGATTCAAGCTCCATTTCAGCGGCATTACGATCCTGCAGAATCTGACTCAAATCTCTCTCATCTTCCAATGAATCATTCAACCCCTCCTCTTCATACTGATCTTGCTCTCCCAAACCCCGAAAAGAAATTACTTGAGAAAGTCGTCATTGTAAAGATCTTCTCCTTCTTCCTCCTCCTCAACATCCTCAGGTTCGTCGCGAACGATTTCTGGATCGACAGCGGCTTCTTCATCGGTGTCGAAATCGTCGGAGAAGTTGCTGGTGTTGGTGTTGGGGGGAAGTTACATGTACTAGCAACGGCTGGAGATGTTTTTGGGCGCCTCATATTTTCACCTTCTATTTCTGTTGACAGTTCGTATAATCCCCGACTAACAGGGAAACCATCTGCCTTGCCAGCCCCTAAGTTT

Protein sequence

MRQMPLSARTSAPPSRVHSRVTGSLCTAAVSPTAEAPLPVLPVVKDYHYHEEAQEVCDYLKPEHRAIQAPFQRHYDPAESDSNLSHLPMNHSTPPLHTDLALPNPEKKLLEKVVIVKIFSFFLLLNILRFVANDFWIDSGFFIGVEIVGEVAGVGVGGKLHVLATAGDVFGRLIFSPSISVDSSYNPRLTGKPSALPAPKF
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo08503Spo08503gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo08503.1Spo08503.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo08503.1.CDS.4Spo08503.1.CDS.4CDS
Spo08503.1.CDS.3Spo08503.1.CDS.3CDS
Spo08503.1.CDS.2Spo08503.1.CDS.2CDS
Spo08503.1.CDS.1Spo08503.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo08503.1.exon.4Spo08503.1.exon.4exon
Spo08503.1.exon.3Spo08503.1.exon.3exon
Spo08503.1.exon.2Spo08503.1.exon.2exon
Spo08503.1.exon.1Spo08503.1.exon.1exon


Homology
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BLAST of Spo08503.1 vs. UniProtKB/TrEMBL
Match: A0A0A9NI29_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.000e-8
Identity = 43/78 (55.13%), Postives = 49/78 (62.82%), Query Frame = 1 

		  

Query: 4  MPLSARTSAPPSRVHSRVTGSLCTAAVSPTAEAPLPVL-----PVVKDYHYHEEAQEVCD 63
          MPLSARTSAPPS VHSRVTGSL TAAVSPTAEAP PV+     PV   Y  +      CD
Sbjct: 1  MPLSARTSAPPSSVHSRVTGSLWTAAVSPTAEAPFPVVYTALCPVFSTYLRN------CD 60

Query: 64 YL---KPEHRAIQAPFQR 74
          +     P  R + +P +R
Sbjct: 61 FAVPGSPSRRTLISPLRR 72
The following BLAST results are available for this feature:
BLAST of Spo08503.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo08503.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0A9NI29_ARUDO3.0e-855.1Uncharacterized protein OS=Aru... [more]
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BLAST of Spo08503.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo08503.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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