Spo26415.1 (mRNA)

Overview
NameSpo26415.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionMethyl-CpG-binding domain-containing protein 2
LocationSpoScf_01155 : 63001 .. 65829 (-)
Sequence length1648
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCTTCCAAAACCAATTGAACGATAATCTAATCAGAATGCCCAATTATCAAGTGGAAAACGGGCCAATTATCAGTCAGTTTCCACCTTCGAAACATTTAGGTTCTAGCAGCTATGAAGCTCTTGCAACTCATCAGTTTCAGCCAAATTCCAAACATAACCCCCAAAGGAGTAATACAAGTAATGATCATCACAATGATCAACAAACGAATGGTGAGATTCTTACACCGGACAAAAGTAGCCATTGATTAATTCCAATTCGTGTCGCAATCCCCCGTAAACTTCAATTGTTATTTTTTCCTCTTAACCAATCCAGTTTTGCACCCTTAGCCCGGCTTGTATTGTTATTTATGCGATTCTTTTTATGTATATTCATGACAATGAATGTTGATTGCTTAATAATTTCAGGCACTATATTGCACCATCTGGTAAGAGACTTCGGTCGATGGTTGAGATTCAGAGGTATGTTTCTATTATCCTCTTCATCTTGAAATTATCTACTTTAATAGATATTTATTTGTAATGTATGTTAAGACTGCTCAGAAGTTTCATTCTTATGCAATATCCACGACTCCTTTGTTTTGTCTGTATGCATATACCTGTTGGAGCATCCATAATTCATTACGGAAGGAGTGACTATGTCCCTGTTTTCATTTCAAATTCCAAAGCCTCTGCAAGAGAACTATGTCAGAAATAGCCCTGCTCGTTTACCTATGCCGGATGGCTCTAAGTTTGGGATGTCAAGAGCCGATCAGACCATTCTGGTATATTTTATGTTTAATAATTTGGGTGTTGTTTAATAATTTGGATGCCTATATTCAGACTCAGACCATAGTACCATATTTTCTAATCAAATGTAACCAAAAAAGGTTGCCTTAGCAAGCCTTCTAAAGATAATTTCTGAACATATTTGCTTTATGTTTTGAAAGGGAAAAAAAGATAAATTGGTACATGGAGAACAAATCCAAGATCATCTTTGCTGGCGAATTTATGAAGACATCAGGCCTATAAGGTAACTTTATTAACGGATTATTTTTTTCTGTATTTTTTTTAAAAACTAATTACTGCTCAGATTCTTGCAGTTTCTTGGGTGTTAATTTTGGATTGATGCCGACTCCCATTTGCAGATTCCACACTAGATCATCAACAAGAACATTGTGTAAGGTTATTGTACCTCTGTATATCTTTCTTGAATTAATCGTATACTCCTTCCGTTTATTTAAATTCTTCAATTCTGGTTTACTGTTTATCATTCAATTATTAAAATAAAACAATATCCATTATTTTATTTTTTTGTAAGTTGGAGCTTGAACGAACTTTAACCGAGCTTATTAACAAACACACACGACTTTATGGACGAAAAACACAAGTTGATTTGTCTATTAGTGAAGTTTATACTTTTGTTTAAGCTCTTTTGTTTACTTAGATACAAAGTTAGATTTATCTATTAATCAAGTTTATACTTTTATTTAAGCTTGTTTGTTTACTTAGAAACGAGTTTCGACCCAAAATTGACTAAGTTTGTTCATCACAAGTTAGTATAGTATCATAGAATCATCCCACAATACTATGCAATAGTACGTAGTATGATCTTAATAAACTTATAGTGTTCCTTTTATCTTTATCCCACATATTTCCCGTCAAAATCCCAGTTGAAATAATAAATGGTTGGTTATGTCGACTGCTCTGCCATTATGCCATGTCTGGATGTTGGCAATACATGACCTTTCTTTTCTGGTTCAAACAGGTGTTTATAAAGGCATGAATTTCACTCTGGTCTTATCATCTATTGATTTGTTATTTCCATTGGCATGTTCTAATTCCGAGGGTGCCCAATCTGAGGGAGTGAGTTTTGACCTAGGTTTCCAATAATCTCTCTTGTGATATGTGCATGTAAATGACTTAGATACGTGTGATTTATGGTGTATTTAGTAGATCTTTATATGGTGTCCCATATATTGTGTTGGACTGTGTCACCATATGTTTGGCAGCGGTTCTGATGGTTGTGGTGTGTTATGGGCGCCTATTTTTTTGTTCTCATGCGCCTATGTAAGCTTAGAGTATAGTTTTAGGTTCTTGATTAATGGAACATCTTGGATTTTGACTGAAAGGTAATGTCGGGAATTTTTATGACATCTTTATTTCTCTGTTTTCATCCGATTCATGTACAAACTCGTTTATAGTCTACTGCACCTTTGTCATTCTTGTGCTAGTTGCATCCCATGCAACAATTTCCTTAGCCTGCTTAATAGTAGCTTATTTGATTCAATCCGGCCAGTTATCCAGCATTTGTTCTTTCTTGGATTACAGTCAAGGCCCATGATGAATTGAACTTGATTTCTTTAGATAATATCATTACTGTGAAGCCACAAGCCCAAAGGGTTGCTGTAAACTCCATAACCCTCCCCCATGCCATTTGTCTTTCTTAAACAAGTAGCTTACCAAAACACAGATCTATGTCCAGACTTCTGAGCGGAGACTGGTAAGAAATATATTGGAAAGGATGTGCAATGCCATTGCTACCTTTATGATGTTGATTAACAGGGGCTATCCTAAATATGATAACGTGGTTAACTCCAGATTTGATTCTTTTCGTACTTTGTTATCAACTACTCTGTATGTTATATGCTGTAAAAGTTCTTATCCAACCTGTGATGCTTCGTAGTTGTGCTAGTTATCACCAGTATAAGCTCTCTCCGCAGCTACTTACAACTTGCAGGAAGGCATAATAAACTGTCAGCCGTGTAATACTAGTCTCAGAGGAAAATGTATACGATTCCAGAGAAGCTTTCTTTAAATGAATTTGGTTATTTACCAGTGTACACGAC

mRNA sequence

ATGCCCTTCCAAAACCAATTGAACGATAATCTAATCAGAATGCCCAATTATCAAGTGGAAAACGGGCCAATTATCAGTCAGTTTCCACCTTCGAAACATTTAGGTTCTAGCAGCTATGAAGCTCTTGCAACTCATCAGTTTCAGCCAAATTCCAAACATAACCCCCAAAGGAGTAATACAAGTAATGATCATCACAATGATCAACAAACGAATGGCACTATATTGCACCATCTGGTAAGAGACTTCGGTCGATGGTTGAGATTCAGAGGAGTGACTATGTCCCTGTTTTCATTTCAAATTCCAAAGCCTCTGCAAGAGAACTATGTCAGAAATAGCCCTGCTCGTTTACCTATGCCGGATGGCTCTAAGTTTGGGATGTCAAGAGCCGATCAGACCATTCTGGGAAAAAAAGATAAATTGGTACATGGAGAACAAATCCAAGATCATCTTTGCTGGCGAATTTATGAAGACATCAGGCCTATAAGTTTCTTGGGTGTTAATTTTGGATTGATGCCGACTCCCATTTGCAGATTCCACACTAGATCATCAACAAGAACATTGTGTAAGGTGTTTATAAAGGCATGAATTTCACTCTGGTCTTATCATCTATTGATTTGTTATTTCCATTGGCATGTTCTAATTCCGAGGGTGCCCAATCTGAGGGAGTGAGTTTTGACCTAGGTTTCCAATAATCTCTCTTGTGATATGTGCATGTAAATGACTTAGATACGTGTGATTTATGGTGTATTTAGTAGATCTTTATATGGTGTCCCATATATTGTGTTGGACTGTGTCACCATATGTTTGGCAGCGGTTCTGATGGTTGTGGTGTGTTATGGGCGCCTATTTTTTTGTTCTCATGCGCCTATGTAAGCTTAGAGTATAGTTTTAGGTTCTTGATTAATGGAACATCTTGGATTTTGACTGAAAGGTAATGTCGGGAATTTTTATGACATCTTTATTTCTCTGTTTTCATCCGATTCATGTACAAACTCGTTTATAGTCTACTGCACCTTTGTCATTCTTGTGCTAGTTGCATCCCATGCAACAATTTCCTTAGCCTGCTTAATAGTAGCTTATTTGATTCAATCCGGCCAGTTATCCAGCATTTGTTCTTTCTTGGATTACAGTCAAGGCCCATGATGAATTGAACTTGATTTCTTTAGATAATATCATTACTGTGAAGCCACAAGCCCAAAGGGTTGCTGTAAACTCCATAACCCTCCCCCATGCCATTTGTCTTTCTTAAACAAGTAGCTTACCAAAACACAGATCTATGTCCAGACTTCTGAGCGGAGACTGGTAAGAAATATATTGGAAAGGATGTGCAATGCCATTGCTACCTTTATGATGTTGATTAACAGGGGCTATCCTAAATATGATAACGTGGTTAACTCCAGATTTGATTCTTTTCGTACTTTGTTATCAACTACTCTGTATGTTATATGCTGTAAAAGTTCTTATCCAACCTGTGATGCTTCGTAGTTGTGCTAGTTATCACCAGTATAAGCTCTCTCCGCAGCTACTTACAACTTGCAGGAAGGCATAATAAACTGTCAGCCGTGTAATACTAGTCTCAGAGGAAAATGTATACGATTCCAGAGAAGCTTTCTTTAAATGAATTTGGTTATTTACCAGTGTACACGAC

Coding sequence (CDS)

ATGCCCTTCCAAAACCAATTGAACGATAATCTAATCAGAATGCCCAATTATCAAGTGGAAAACGGGCCAATTATCAGTCAGTTTCCACCTTCGAAACATTTAGGTTCTAGCAGCTATGAAGCTCTTGCAACTCATCAGTTTCAGCCAAATTCCAAACATAACCCCCAAAGGAGTAATACAAGTAATGATCATCACAATGATCAACAAACGAATGGCACTATATTGCACCATCTGGTAAGAGACTTCGGTCGATGGTTGAGATTCAGAGGAGTGACTATGTCCCTGTTTTCATTTCAAATTCCAAAGCCTCTGCAAGAGAACTATGTCAGAAATAGCCCTGCTCGTTTACCTATGCCGGATGGCTCTAAGTTTGGGATGTCAAGAGCCGATCAGACCATTCTGGGAAAAAAAGATAAATTGGTACATGGAGAACAAATCCAAGATCATCTTTGCTGGCGAATTTATGAAGACATCAGGCCTATAAGTTTCTTGGGTGTTAATTTTGGATTGATGCCGACTCCCATTTGCAGATTCCACACTAGATCATCAACAAGAACATTGTGTAAGGTGTTTATAAAGGCATGA

Protein sequence

MPFQNQLNDNLIRMPNYQVENGPIISQFPPSKHLGSSSYEALATHQFQPNSKHNPQRSNTSNDHHNDQQTNGTILHHLVRDFGRWLRFRGVTMSLFSFQIPKPLQENYVRNSPARLPMPDGSKFGMSRADQTILGKKDKLVHGEQIQDHLCWRIYEDIRPISFLGVNFGLMPTPICRFHTRSSTRTLCKVFIKA
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo26415Spo26415gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo26415.1Spo26415.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo26415.1.CDS.6Spo26415.1.CDS.6CDS
Spo26415.1.CDS.5Spo26415.1.CDS.5CDS
Spo26415.1.CDS.4Spo26415.1.CDS.4CDS
Spo26415.1.CDS.3Spo26415.1.CDS.3CDS
Spo26415.1.CDS.2Spo26415.1.CDS.2CDS
Spo26415.1.CDS.1Spo26415.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo26415.1.utr3p.1Spo26415.1.utr3p.1three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo26415.1.exon.6Spo26415.1.exon.6exon
Spo26415.1.exon.5Spo26415.1.exon.5exon
Spo26415.1.exon.4Spo26415.1.exon.4exon
Spo26415.1.exon.3Spo26415.1.exon.3exon
Spo26415.1.exon.2Spo26415.1.exon.2exon
Spo26415.1.exon.1Spo26415.1.exon.1exon


Homology
[Close]
BLAST of Spo26415.1 vs. NCBI nr
Match: gi|902226784|gb|KNA20480.1| (hypothetical protein SOVF_052010 [Spinacia oleracea])

HSP 1 Score: 105.1 bits (261), Expect = 1.400e-19
Identity = 61/78 (78.21%), Postives = 64/78 (82.05%), Query Frame = 1 

		  

Query: 1   MPFQNQLNDNLIRMPNYQVENGPIISQFPPSKHLGSSSY-EALATHQFQPNSKHN-PQRS 60
           MPFQNQLNDN+IRM N QV+NG    QFPPS HL SSSY EA ATHQFQPNSKHN  QRS
Sbjct: 218 MPFQNQLNDNIIRMANSQVDNG-FTGQFPPSNHLVSSSYEEAPATHQFQPNSKHNHRQRS 277

Query: 61  NTSND-HHNDQQTNGTIL 76
           NTSND HHND+QTNG IL
Sbjct: 278 NTSNDHHHNDKQTNGEIL 294
[Close]
BLAST of Spo26415.1 vs. NCBI nr
Match: gi|902219735|gb|KNA18395.1| (hypothetical protein SOVF_071160 [Spinacia oleracea])

HSP 1 Score: 81.3 bits (199), Expect = 2.100e-12
Identity = 38/44 (86.36%), Postives = 39/44 (88.64%), Query Frame = 1 

		  

Query: 90  GVTMSLFSFQIPKPLQENYVRNSPARLPMPDGSKFGMSRADQTI 134
           GVTMS FSFQIPKPLQE+YVR  PARLPMPDGS FGMSR DQTI
Sbjct: 216 GVTMSQFSFQIPKPLQEDYVRKRPARLPMPDGSNFGMSRPDQTI 259
[Close]
BLAST of Spo26415.1 vs. NCBI nr
Match: gi|731318180|ref|XP_010669582.1| (PREDICTED: methyl-CpG-binding domain-containing protein 2-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 60.8 bits (146), Expect = 2.900e-6
Identity = 27/38 (71.05%), Postives = 32/38 (84.21%), Query Frame = 1 

		  

Query: 89  RGVTMSLFSFQIPKPLQENYVRNSPARLPMPDGSKFGM 127
           +GVT+S FSF+IPKPL+ENYVR   ARLPMPD + FGM
Sbjct: 197 QGVTLSQFSFRIPKPLKENYVRKRTARLPMPDETNFGM 234
[Close]
BLAST of Spo26415.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RLU6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_052010 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 9.500e-20
Identity = 61/78 (78.21%), Postives = 64/78 (82.05%), Query Frame = 1 

		  

Query: 1   MPFQNQLNDNLIRMPNYQVENGPIISQFPPSKHLGSSSY-EALATHQFQPNSKHN-PQRS 60
           MPFQNQLNDN+IRM N QV+NG    QFPPS HL SSSY EA ATHQFQPNSKHN  QRS
Sbjct: 218 MPFQNQLNDNIIRMANSQVDNG-FTGQFPPSNHLVSSSYEEAPATHQFQPNSKHNHRQRS 277

Query: 61  NTSND-HHNDQQTNGTIL 76
           NTSND HHND+QTNG IL
Sbjct: 278 NTSNDHHHNDKQTNGEIL 294
[Close]
BLAST of Spo26415.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RFY9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_071160 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.500e-12
Identity = 38/44 (86.36%), Postives = 39/44 (88.64%), Query Frame = 1 

		  

Query: 90  GVTMSLFSFQIPKPLQENYVRNSPARLPMPDGSKFGMSRADQTI 134
           GVTMS FSFQIPKPLQE+YVR  PARLPMPDGS FGMSR DQTI
Sbjct: 216 GVTMSQFSFQIPKPLQEDYVRKRPARLPMPDGSNFGMSRPDQTI 259
[Close]
BLAST of Spo26415.1 vs. UniProtKB/TrEMBL
Match: A0A0J8FP83_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g035750 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.100e-6
Identity = 27/38 (71.05%), Postives = 32/38 (84.21%), Query Frame = 1 

		  

Query: 89  RGVTMSLFSFQIPKPLQENYVRNSPARLPMPDGSKFGM 127
           +GVT+S FSF+IPKPL+ENYVR   ARLPMPD + FGM
Sbjct: 197 QGVTLSQFSFRIPKPLKENYVRKRTARLPMPDETNFGM 234
The following BLAST results are available for this feature:
BLAST of Spo26415.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 3
Match NameE-valueIdentityDescription
gi|902226784|gb|KNA20480.1|1.4e-1978.2hypothetical protein SOVF_0520... [more]
gi|902219735|gb|KNA18395.1|2.1e-1286.3hypothetical protein SOVF_0711... [more]
gi|731318180|ref|XP_010669582.1|2.9e-671.0PREDICTED: methyl-CpG-binding ... [more]
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BLAST of Spo26415.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 3
Match NameE-valueIdentityDescription
A0A0K9RLU6_SPIOL9.5e-2078.2Uncharacterized protein OS=Spi... [more]
A0A0K9RFY9_SPIOL1.5e-1286.3Uncharacterized protein OS=Spi... [more]
A0A0J8FP83_BETVU2.1e-671.0Uncharacterized protein OS=Bet... [more]
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BLAST of Spo26415.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo26415.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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