Spo19532.1 (mRNA)

Overview
NameSpo19532.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionPentatricopeptide repeat-containing family protein
LocationSpoScf_02989 : 18236 .. 30296 (-)
Sequence length609
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCCTACTTTTCTTGAAGGATAGACTCCACAACTCTAGGTCTGATGTCTGAGGTTTTGAAACTGATATAAGTTGAAAATAGCACCTGTTACTCTTCTATCTTATTACAACTTTTTTTTGAGGGATATAAGTTTTACATCGGGTTTATCATACACTGTGTCTGCATGTTTGGATAGGCCTACATGAGCCTATTTCTGATTTTACAGTAAAACACTAAACAGTCCCCACCCCATGTCCTCATAAACTATCAGAACGCAAAACGTAGTGAATGTAATGTCTTCGTCACACTTTCTGTTAACTTCGATCTATCTCTATGTCTACACTATGTGTTAACTTGTTGATCTATGTCTATGTCCAGGCATATAGGACAGTTGGAATATACAGGTTAGAATATACAGGTTAGATATACCAGGTCATAGTGCATATCTTACCGGGCTTAGCATTATTGGGGGTATGACATTGTTCCCATCTGCTGTTGAGGTAAAACTGAATTTGGGGTTGAATACTCCATTCTCCATTAATTTAGATATTTCCATATGAGTCACAAGGCCCACATCTGTAACAAATGAGGCGGACCTTGTGGCTCATGTGAGTTTGGTTCTGCTCTCTATACAAACCTGCATGTATACCCCTTCCATCCTAAATCGCGTGAGACTTCTAAGAGCTAATGATATTATGACTTAAGCTGAGCCAGTTTTCTATGAAGTTTGAAATCTTTGTCCATGGGAGTATTGAGAGAATTAATCATATTTCCTGTGAGAGTGTGAGTTATAAACTATAATATGATAATACTCAAACATTTTTGCAATTTGCACATGACCCTGCTTGGAGCATTATTAGCCATTGTTTATAATGAATGTTGAATTGAATTTCTGTGGGGTTGAACTGACATGGGATGATTCTTTTGGTGGTGGGGTTGAAGAAGGTCGATTTTTGGTTACTGTGTTTCAGCAAATTATGTGGAGAATAATTATTGGTTAATTTTGTTCAAAATTTTCAAGGGATATTTTTTTAGGGTTGTTTGATAGCTTTGTTATGCTGAAATCATCAGAAATTTCTGAGATTATGTATTTTAATTGATAGTTTGACTGATTTGGTTGGGATTCGAAACTGAAATTCTTGGTTTGGGGGATTTTTTTTCTATTGATAATTTGTTGACTGGAAGTTGTTGGGAATTCCTGGTGTTTAAGATTTTGATTATGGATTTGGTGCTATGCTTTCTGTGGGGAGAATCGTATGGAGTTACATTGATTCTGCAACCAATTTTGGTTGCTGATCATTATGTTGGTCTTGCCTGAAACTACTGGTGATTGCTGCAAGTAAAACTGTACCGATGAGGACAAACTTTCATGTTATTCTACAATTCGATCCAGCATACACTGCTCCACCATGGGTTGTTCTTATTGCAAGCGCCTTTGTGATTTTGACCCTTTGAGCACCGACGCCTATTAGGTTTAGGTACTTTTATAACTGTTCGATCTGTACCTTGGTTTACATGTTATTTATGAAAACATTGTGGTAAATGGTGAAAATTCTGTTTTCAAAATGAAGAATCTGCATTGCCATTATTGCTTTATTTGTACTTTGTTTACCTTGGTTTCTTTAGGTACTTGATAGCCTGAAATGCCTAATTATGATGTAGTTTTTGTTGTCATGGTATTATTGTTTCTATTGATCCCTAATTATTTGTTACACTGAACTAGAATAGAGGGAAATGCGGGACCATTGTTACTGCAGAGTTTGCTGTGGTTGTATTGTTTGCTATGATCATAGTCGTAAATGGTTGTCTGCTTCAAAGGCGGGTCCTGAAAAGTGGATGAAGGTTTGTTTCCTTGATCTTTTATTTGGAATATATAAAGAAGAGAATCGCTTGCTTATTGATTTTCTCTGGGTTTTGCACTTGTGCAATATGAATTTGAGCTAATGTGTTCCGAGTAATTTGAGTAACTGATCATAGTTTCAGCAACAAAGAGTGAAATGTTATGACCTTGAAGTGGTGGATTTAGAACCTTATTAATGGGGGTTTAAATTAATATCAAACTGATTTATTTTACTTATAGTCGTTTCTTTGGCTTTTTTTATTCCTTGATTTTGGGAGTCTCAAGAACTTATAGCAGCAGCTTGCATTATAGTTCCATTCTTGGTGACCTTGTTGAACTTCGTTATATTATGTCTGATCACTACCATTTGAGCTTGGAAACAAATATTTGACATTTTCATTGGAGTCATTACACTGGTTTGTGTATTAACAGGATAAATATGATTGCATGAACAGGCACCACGCAGGGGAGTGCTGCGAGATTAGAAATAGCCCGACTGTGTATATAGTAACCTGCGAATAACGATTAGAAGTTGTAAGCCGAGGGAATCCATCACGATATGAAGGTCAGCTCATATTCTCTTTTTTATTTTTATTTTTATTTTTATATATGTTAGCCATTATTTTCTTTAGTGTGCTCTGATCAGGAACCACCCTACATTGTGGATGAATTAGAATTGGATAGAAAAGAAGTAGCAGTTTGACAAAAGTTTTTAATCTAGGACTTGACTTTGCAAGGTTGGGTTTGTTCACATTTACAAGTTGTATGTGAAAAACAATAATGCCATATGAACAGAGACATTTATATCAAAACTCGATGACTGCCTTCCTATAGTAGTCAGGTGAGGATCCATCATGCCATAGGCTCTCACCGTCAGACCCCTATGTCTTGTCGTCTTAATGTTGTGCCGTTTTCAGTGTGAAGTCTTGGATCTGTAAATGAAAGATTGATTGTCTGCGCCTTAACTCGACAGAAAACTGATGCCAGTTGATGAAGAGAACGCATGGGCAGGAACTGGACAGTGCGATATGTTGATAAGTGTGATAACATCAGCTACATTTGGGTCAGGTTAGGGGGTTGGAGAAGGTAATGGATGAGTCAAAACCTGAAGAAATTGCCGTTAGTACAACTTTCAGTTAGTATCTTTGACTTTTGATGTCACTTCCTGTTATTCAGAATTCAGATCAGCCACCCTTCTGCCCTTGGGCATTAGATCGAATCTTTTGAGGTTCCCGTGTTAGAAAACAAAGGGATCACTGCCACGATAACTACATACTTATCAATATGCAACTGTAATCTCATGGCCGGGATAGTGGGAAAAACTACTAAGGTCAATCTGATGATTACTGTTTGAATTTTCAGGTAAAGTGGAGATTTGGCGCTATTGAAGGTTGTACCAAAATTTATGTAAATAGAACCAGAAAAGGAAAGGAGCACTCCTAGATAATTTTCTTTTCCTTTTAGAAGGAGTAGATTAGAAAATAGAGATAGTTCATGTACACTAATACTCCACGAAGATTACTAAGCATCTAAGCTATTTTTTCTCTTCTTAGATGATCGTCTTTGAAGCTGTGAAGGTATATAAACGTGAACCTTTATGTTCGCCTTCAATGACGTCTGCCTGCAATGAACTATACCGAACACGTCCTTGACTGTTGACAACTTCACATCTTTGTAATAGTTTTCATCCGAATTAATAATAGTGTTTTTTTACATATATTCCAGTAGACCCTAGAGGCTTGGCTTTCTGATTTGATTGATGCATATAAAGTTGTTTAAGGTTTATATTTGCCTTAATAGTAGTTTGCATTTGTTTTCTGTCATCAGCTTGACGTTAGAGGAGACATCTATGGTATTCTAGCTGCACATCCCGTGGCTCTCTTGGTGTCACACTGTCACTGCACCATCTTGTTGGTGCAAGGCCATTGTTTCCAGGTGAAATCAGGTGGACTCTTTAAGAAGGCTGTTGCACACATACAAGGCTGACCCAGGCTTCACCATCCAGCAGAGTTTTTGCTACGGTCATAGTCGTAAATGGTTAGTGAGTCTTCCTCGTAAAGTCTTTTCTTATAGTTCTATGCAATTTTTCTATGCTATTTTATTAGTTGGTTATTGCGTGTTTAGTTAATCATGTCTCATTATCCATGTTGTTGTCATGAATTTAGAGTTCTAATGTATCTATGACATGAACTAAAAACCACTTCAAGTCTGTTGGCTGTGGAACTTGTACATTAGTGGTTGGAAAAGAAGCCAGTAAATAGCCTATTACTTTTCTAGATCGATTATCACATATACTTTATCCAGCAAATAATATACCACCATCTGTTGTATAAGGTTAGATATCGCTTGGTAAGTAAAAGTAGATTTAGTAATTCGGGTATATACCGTATATGCATTGGTTTAGTGGTAGAGCATGCTAAAAAAAAGGTATCTTTGGTAAAAGCATAATATAATGATATGATAAAAGGCTTGGTTATATGTGTTAGGATTGGGTTGGTTACTCTCAATAAATTGAATCAGATTAAATTTTGCTAGCTTAAAGTGTGAGTTGTTCCAGATTCTTTCCTCTGTTTTGTGGTTCTACTAATTGGGATATTGTAGATAGGAAGAAAACTGGGACTGAAGGAAATTTGTATCTGTCTATTCTGTTTCGATTCCATCTCCACGTGGAAATATAATTTAGTTATACGAAGTATTAGTTATTGTGTTTTGGTCTTTGGTAGGTATATTTGTTGATATAATTGATGTTATGGTCTTATCAACCATAGCTCGTTAGTAGCCTATACTAACCTTGGACTTCTTTGTAGCTCCTACTTCTTAAATCTCAATACACTGTAGAATTGTAGCACGTTAGTCTATAATACAGAGGGACCTAAAAGAGAATGACAACAACTGGGGTCTATGCGTCTATCCAAATGAATGGGCCACGATAAAACACATTATTGAAGCTCTTGTGGAGTCTGGCTCCAGGAAGCCTATCTCATGCTAGAATATATATATATATATATATATATATATATATATATATATATATATATACCACTGAACTTGTTACTTGTCAACTGGTTGGTGTTTATACCAAAACCAAGTTGCTAGATTATGGTACGTGACATAAAATTATGTTGCATAGTGATATTCAACTGTTTTCCAGTAAAGGGGTCGGTCTTAGGGAAATTAGAATAGACTCTATGCGGCCACAGGTTTACAGTTATTACCGTAGTATTCTATCAGAAATAAAAGAAACAGTTGAAAGTGTATCGTTTCCTTTTTTCTGCGCTCGTGTTTTAGCTGCTGAGCTAGATAATGCCTTATCAGTTTATCGTCTCCCAATCCTGCCCTTGTAGAGCAAAGTAAGTGCACCAGGTTTTGTGATTTACTGCCCTTACTATGGCAGACCCGGAAGGTGCAACTGTGCAAGTGAAACGAGATGCCATCACTTATTTTACCTTTGGAAAATATCACTTTAATTTAATAGGTGAGAATTAATAATGATAGAAGCAGTTCAAAAACCAGGCTGTCTTTCCTCGAGTCTGATGGTAATAATCTATTAGTTTCACTTCCCTTACACAAGGGAGACTGCCCTATCCAGCCTGCACAGTGATAATTGTGTGAAGAAAACCCCATGGTTGTTCTTGCAGCCGTTAAAATCTCCATTCTTCAGTAGAGAAGGTCGACATTATAAACATTCAGACCTCGAACTCTACTCGTTATCTACATGTCATTGCCTTTAGTTAGTTCACTCCTTTGGCCTTTGTCCCTTTTATGATTGTCTTTTTGGTTAATTTCTATGCAAGTGTTTGTTGTTCTTGTTAATTTGTGGCAATTGTTTGATTCTTCTCTTGTTATAAATGAAAGACCTTTTAGGCTTGAATGTTGATTTGTATGACAATTTGATGTTTGAATAATGAGAAGAAATAATTAAAGAAATTAAAAACACACACAAAGATTTAAGGTGGTTCACTCTTCAATGAGCTACATCCACCATGGGGGAGGGTTTGGAGCTTGTATTACTCTTCAATGGAGAAAGGATTACAAAGAGGAATTCTCAAAGGTGAAGAAGAGAGAATTCTATGTATGCTTAGATCTAGAGTTTCAACCTCACTTGTGTTTCTCTCTCTTAATTCTGAAAATCTCATTACATTTGTTATTTATAGTGTTAGACATCAAACCAATCTAAGGGACAAGAAAAGGCCACGTCGATTGTACTGTGCGGAGAAGAAAACAGATTACCCGCAGAGTTCGGTCGAACCTTCAAAGGGTTCGGCCGAACCAAGGTCAGGTTCGGCCGAACTTACCAAAAAGTTCGGACGAACCTCCAAAAACATAGTTCCTGATTCTCTTCAGGTTCGGCCGAACTTCCAGTAGGTTCGGCCGAACTTATCCAAAGTTCGGGCGAACCTCCAAAATCACAGCTACTGACTTCAGGTTTGGCCGAACCACCTAATAGTTCGGCCGAACTTCCAGCAGGTTCGGCCGAACTTCCAGCAGGTTCGGCCGAACTTCCCCTGCTGCATGACAGCTTCTCGTAAAACAGTCATAACTCCCTCATTTCTCATCCAAAATGAGCTTATGACCAGGCGTTGGAAAGCTATTGCGCCAAGCTTTCACCTCCAACTTGAATCAACTCAATCTAATGAGTAGATCATGAGATATGTCCATTTGAAGTCAGACCTTCCACTATAACACCCTAACATCCTTCAAGGAAGATTCGAGGCACACATAACAATTCTCCACCTTGACTTGAATCCTCCACACTTCCTCATAATGTAATACCAAACTATACTCCAAACACACTCCCAACAAGCCCTTATGGGCTTACATCGACCATGGAGAAAGACCAACTAAGTCCACACACAAAGTGAACTTAGTTGTCGGCAAAGGCTTTGTCAACATGTCGGCGGGATTCTCCTCGGTACCAATCTTCTTCAAGAGCAATTCTTTCTTAGCTATCACATCTCGAACGAAGTTGTACTTGATGTCATTGTAGAATGTGTTTTGATTCTTAGCCAAATGTATGGCACTTTGACTATCACAAAACACGGACACCAAGCTTGAACATGGACTAAACTCTCCCACTAGACCCTTGAGCCACTTTGCTTCTTTGAATGCTTCGGTAATGGCCATAAACTCGGCCTCCGTAGTTGAAAGAGCTACAACATCTTGTAGCGTTGATTGCCAACTCACGGCCGTACCACCTAAAGTAAAGACATAGCCGGAAGTAGATTTCCGGTCATCCAAATCACCTCCATAATCCGAATCACAAAACCCCTCAAGCCCGTTTGCATTTCTACCAAACTCAAGGCAAACGTTTGAGGTACCCTTCAAGTACCTCAACAACCACTTCACGGCTTCCCAATGGACCTTTCCCGGTCTTGACATATACCGACTAACCATACTCACCGCATGCGCTATATCCGGTCTTGAACACACCATGGCATACATCACACTTCCAACCGCACTAGTGTATGGAATGTGAGCCATGGACTTTTCTTCTTCCTTGGATTGAGGACTAAGCTCCTTTGAGAGCTTAAAGTGAGAACTCAATGGAGTGGAAACGGGTTTTGCATGCACCATGGAGAAGCGCTCAAGCACCTTCTCAATGTATCTCTTTTGACTAAGATACAAAACACCCGCATTCCTATCACGAATAATCTCCATACCAAGAATCTTCTTGGCTTCACCAAGATCTTTCATATCAAACTCATTTGCCAACAACTTTTTCAAGTTGTCAATCTCAATCATATTCTTGCAAGCCACCAATATATCATCTACATATAAGAGCAAGTAGATGAAGGAACCACTCACAAGTTCTTTGTAATAGGCACAACTATCATAAGAGCTCCTTGTGAAATCATGTGCCAACATGAACGAATCAAATCGTTTATACCATTGCCTTGGAGATTGCTTCAAGCCATACAAGGACTTTAAAAGATGACACACATGATTTTCCTTCCCTTTCTCCTCAAAACCTTCCGGTTGCTTCATGTAGATCTCCTCCTCCAAATCCCCATGGAGGAATGCGGTCTTCACATCAAGTTGGTGTAACTCCAAGTCTTCCATAGCTACCAAGGCAAGCAACACCCTTATGGATGAGTGTTTCACAACCGGAGAAAATACTTCATGAAAGTCAACGCCTTCAATTTGTGTGAAACCTCTTGCAACAACTCTTGCCTTGTAGACGGGACCGCCCGATTCCGGTGTACCTTCCTTCTTCTTGTACACCCACTTGCACCCAACAATTCTTTTGCCTTTCGGTGCAAGCATAAGCTCCAAGTATTGTTCTTGTGCAAGGACTCCATTTCTTGCTCCATGGCCATCAACCACTTGCCGGCATCATTTATTGACATTGCTTCCTTGAATGAACAAGGATCATCATTATCGGTCTCCACTTGACTTGCAACGGAGAGAGCATATTGAACATAATCACACTCCTCAATGTATCTACTTGGAGGCTTGATTGGTCTCTTTGCTCTTTCTTCGGCAATAGATTTCTTTTGAGCTTGTGGTGTCGCTTCACGAGGTCTCCTTGATGAGGGACCATCTTCATGTGAATGCTCATCTAGCTCCACCTCCTCCTCGGTATCATGGTGTGAACCTACATCATTGCAAATAGAAAGCTTCTTTCCCGGAGTGATCATACAATTTTCATCAAAAACAATATCTCTAGAAGTTATGACTCTTCTAGATTGGTTACACCATACTCTATAACCTTTAACTCCTAAACCATAGCCAACAAAAATACATTTTTTAGCTCTAGGTTCAAGTTTACCATCACTAATATGAATATAAGCCGGACAACCAAATACTCTCAAACTAGAATAATCAACGGGTTTTCCGTACCATACCTCAAGAGGTGACTTGAAGTCAAGAGCCGAGTGAGGAGAGCGATTCACCAAGTAACAAGCCGTTACGTTGAAACGGCTTCCGCCCAAAAAGATTTCCCCAAATTTGCTTGTGAAAGCATATATCTAGCCCTCTCTAAGAGAGTTCTATTCATTCGCTCCACAACCCCATTTTGTTGAGGTCTACCCGCACAAGTTCGATGCCGCACAATGCCATGCTTGAGACAATACTTCAAGAACTTCTTCTCTACAAACTCTAGACCATTATCGGTACTCAAGGTTTTGATCTTTTTTTCGGTCTTCTTTTCAATCATGGTCTTCCAATCATGGAACACATCAAAGACATCATCTTTATGCTTTATAAAGAACACCCAAACCTTCCTAGAGAAGTCATCAATTATAGTGAGCAAATAATTACAACCACCAATCGAAGGAACTCTAGAGGGTCCCCACAAATCCGAATGGATGTATTCAAGTATCCCTTTGGTGTTGTGTACCGCGGGTTTGAAGCTAACCCTCTTGTGTTTACCAAACACACAATGCTCACAAAAGCCAAGGCTTCCAAGCTTCAAGCTTCCAAAACAACCTTGCTTGCTAAGCTCCGACATACCATGCTCCCCCATATGACCAAGTCTCAAATGCCATAACTTGGTTTCACTATCACTCATAGTACTTGTGGAAACATTTGCCGAGCCTACCATGGTGGATCCTTGCAATGAGTACAAGCTACCCACTTTGGCACCCTTCATCAACACAAGAGCACCTTTCACAACCTTCATTACTCCACCTTCCGCTATGCACTTACAACCGTTAGTGTCAAGAGTGCCAAGAGAGATCAAATTCTTCTTTAGCTCCGGAACATGACGAACTTTAGTTAAGGTTCTCACAATACCATCAAACATTTTGATGGCTACCGTCCCAATTCCAATCACCTTGCACGTTGCATTGTTTCCCATGGTGACATTACCTCCATTATACTCCTCATAGGAGCTAAAGAGATCCTTGTTGGGGGTCATATGAAACGAGCAACCCGAATCCAAAATCCATTCATCCTTACCCTTGATTCTTCCATGAGTGGCAACCAATGCACCACTATCACTATCGGTATCTACATAGCTAGCCTCGGCGGTAGCATGAGGTTCTTTGCCCTTTCCGGACTTACCATCACCTCCCGATTGTTTCTTTTGCCACTTCCAACATTCCGACTTAATGTGGCCTTTAATGTGACAATAATTGCAAGACTTGTTACGGTTAGGATTCGGTTTCTTTGACTTGGACCGACCCCTATTCTTTCCCCCATTGCCACCATTACTAGTAGAAGTCTTCTCATGATTTCTACCCCTCACAAACAAGCCATCATTGGAGTTATTTGATGATTTAGAAATTAATTGATTATCAATTAAGTCCCTTTGGGTCAAAGCATCTCTAACATCATCAATACTCAAATCATCTCTACCATACAAGATAGTTTGACGAAAATGTTTATAGGATGGTGGTAATGAACATAACAAGTAAATTGCAAGATCCTCATCATCTAAAACAACATCAATATTTTGAAGATCCATAACAATCGAAAAGAACTCATCTAAATGAGACTTAAGAGAATTACCTTCCTCAAGCCGAAGATCATAGAGTCTACTCTTGAGTAGTAGACGATTGGTGACACTTTTAGCCATATAAAGAGCCTCCAACTTCGACCATAGATCATTGGCGGTTTCCTCCTTGGCAACTTCCCTCAATACTTCATTCGAGAGGCAAAGTTGTATAGCCGACAAAGCCTTCAAATCAATCTCCTCCCACTTCTCTTCCGTAATGGTAGTGGGTTTCTTATCCTTCCCTTCAAGAGCCTTGTGCACACCATTTTGTATCAAAATAGCTTTCATTTTCAATTGCCAAAGGCCAAAGTTAATTGACCTATCAAACTTCTCAATATCCAACTTCATTGTTGACATGAGTATTCAATACTCTCAAGAAATCAAATAAACAACCCAAACACAACCTTAGCTCTGATACCAATTGTTATAAATGAAGGACCTTTTAGGCTTGAATGTTGATTTGTATGACAATTTGATGTTTGAATAATGAGAAGAAATAATTAAAGAAATTAAAAACACACACAAAGATTTAAGGTGGTTCACTCTTCAATGAGCTATATCCACCATGGGGGAGGGTTTGGAGCTTGTATTACTCTTCAATGGAGAAAGGATTACAAAGAGGAATTCTCAAAGGTGAAGAAGAGAGAATTCTATGTATGCTTAGATCTAGGGTTTCAACCTCACTTGTGTTTCTCTCTCTTAATTCTGAAAATCTCATTACATTTGTTATTTATAGTGTTAGACAACAAACCAATCTAAGGGACAAGAAAAGGCCACGTCGATTGTACTGTGCGGAGAAGAAAACAGATTACCCGCAGAGTTCGGTCGAACCTTCAAAGGGTTCGGCCGAACTTACCAAAAAGTTCGGACGAACCTCCAAAAACATAGTTCCTGATTCTCTTCAGGTTCGGCCGAACTTCCAGTAGGTTCGGCCGAACTTATCCAAAGTTCGGGCGAACCTCCAAAATCACAGCTACTGACTTCAGGTTTGGCCGAACCACCTAATAGTTCGGCCGAACTTCCAGCAGGTTCGGCCGAACTTCCCCTGCTGCATGACAGCTTCTCGTAAAACAGTCATAACTCCCTCATTTCTCATCCAAAATGAGCTTATGACCAGGCGTTGGAAAGCTATTGCGCCAAGCTTTCACCTCCAACTTGAATCAACTCAATCTAATGAGTAGATCATGAGATATGTCCATTTGAAATCAGACCTTCCACTATAACACCCTAGATTCGAGGCACACATAACATCTCTGATTGAAATTCATGTTCTTTTATGATAAATACTAAAAAAAAATACACATGTGCATCTTTTTCTTTTGATTGCATACATTGACTTAGCTGTGATATTCATCGGAACGAAATCAGAGTATGTCTTTTGGTCTACAACCTTCTGTTGTTACCTTTAATTCTTTGATAAAAAAAAGGTTGGGTGAATCAGGTCAGAAAAATGGTTGGAAAGGATGAGAGAGAAGGGAGTTGCTCCCACAGTTGAAACATATAACATTCTTATTGATAATGGTTATGGCAGGAATCAAGTGATTGGTCGTAGTTTCGAGATGCTGGAAAAGTATGGAGAACTATGGTTTGAATTCGCTCTCTTATAAATTGTCTTTGTCTCTACAAATTAAGAAGGTAATCCTGTTGAAGCCGAGGTTTCTTTGGGGGATATGTTGGGAATGGGGGTTCTACCAAATGCACATCTATACAAGTTGATTTCCGCTAACATAGTGCCAACATTGGTTACTTATAATACTCTTATTATCGGGTTATGCAAGAATGGGGAATTACAGGAAAGCTGA

mRNA sequence

ATGGCCCTACTTTTCTTGAAGGATAGACTCCACAACTCTAGGTTAGATATACCAGGTCATAGTGCATATCTTACCGGGCTTAGCATTATTGGGGGTATGACATTGTTCCCATCTGCTGTTGAGCCATTATTTTCTTTAGTGTGCTCTGATCAGGAACCACCCTACATTGTGGATGAATTAGAATTGGATAGAAAAGAAGTAGCAGTAAAGTGGAGATTTGGCGCTATTGAAGGTTGTACCAAAATTTATATGATCGTCTTTGAAGCTGTGAAGCTTGACGTTAGAGGAGACATCTATGGTATTCTAGCTGCACATCCCGTGGCTCTCTTGGTGTCACACTGTCACTGCACCATCTTGTTGGTGCAAGGCCATTGTTTCCAGGTGAGAATTAATAATGATAGAAGCAGTTCAAAAACCAGGCTGTCTTTCCTCGAGTCTGATGGTAATCCTGTTGAAGCCGAGGTTTCTTTGGGGGATATGTTGGGAATGGGGGTTCTACCAAATGCACATCTATACAAGTTGATTTCCGCTAACATAGTGCCAACATTGGTTACTTATAATACTCTTATTATCGGGTTATGCAAGAATGGGGAATTACAGGAAAGCTGA

Coding sequence (CDS)

ATGGCCCTACTTTTCTTGAAGGATAGACTCCACAACTCTAGGTTAGATATACCAGGTCATAGTGCATATCTTACCGGGCTTAGCATTATTGGGGGTATGACATTGTTCCCATCTGCTGTTGAGCCATTATTTTCTTTAGTGTGCTCTGATCAGGAACCACCCTACATTGTGGATGAATTAGAATTGGATAGAAAAGAAGTAGCAGTAAAGTGGAGATTTGGCGCTATTGAAGGTTGTACCAAAATTTATATGATCGTCTTTGAAGCTGTGAAGCTTGACGTTAGAGGAGACATCTATGGTATTCTAGCTGCACATCCCGTGGCTCTCTTGGTGTCACACTGTCACTGCACCATCTTGTTGGTGCAAGGCCATTGTTTCCAGGTGAGAATTAATAATGATAGAAGCAGTTCAAAAACCAGGCTGTCTTTCCTCGAGTCTGATGGTAATCCTGTTGAAGCCGAGGTTTCTTTGGGGGATATGTTGGGAATGGGGGTTCTACCAAATGCACATCTATACAAGTTGATTTCCGCTAACATAGTGCCAACATTGGTTACTTATAATACTCTTATTATCGGGTTATGCAAGAATGGGGAATTACAGGAAAGCTGA

Protein sequence

MALLFLKDRLHNSRLDIPGHSAYLTGLSIIGGMTLFPSAVEPLFSLVCSDQEPPYIVDELELDRKEVAVKWRFGAIEGCTKIYMIVFEAVKLDVRGDIYGILAAHPVALLVSHCHCTILLVQGHCFQVRINNDRSSSKTRLSFLESDGNPVEAEVSLGDMLGMGVLPNAHLYKLISANIVPTLVTYNTLIIGLCKNGELQES
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo19532Spo19532gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo19532.1Spo19532.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo19532.1.CDS.8Spo19532.1.CDS.8CDS
Spo19532.1.CDS.7Spo19532.1.CDS.7CDS
Spo19532.1.CDS.6Spo19532.1.CDS.6CDS
Spo19532.1.CDS.5Spo19532.1.CDS.5CDS
Spo19532.1.CDS.4Spo19532.1.CDS.4CDS
Spo19532.1.CDS.3Spo19532.1.CDS.3CDS
Spo19532.1.CDS.2Spo19532.1.CDS.2CDS
Spo19532.1.CDS.1Spo19532.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo19532.1.exon.8Spo19532.1.exon.8exon
Spo19532.1.exon.7Spo19532.1.exon.7exon
Spo19532.1.exon.6Spo19532.1.exon.6exon
Spo19532.1.exon.5Spo19532.1.exon.5exon
Spo19532.1.exon.4Spo19532.1.exon.4exon
Spo19532.1.exon.3Spo19532.1.exon.3exon
Spo19532.1.exon.2Spo19532.1.exon.2exon
Spo19532.1.exon.1Spo19532.1.exon.1exon


Homology
[Close]
BLAST of Spo19532.1 vs. NCBI nr
Match: gi|902221717|gb|KNA18980.1| (hypothetical protein SOVF_065810 [Spinacia oleracea])

HSP 1 Score: 84.7 bits (208), Expect = 2.000e-13
Identity = 38/40 (95.00%), Postives = 40/40 (100.00%), Query Frame = 1 

		  

Query: 90  VKLDVRGDIYGILAAHPVALLVSHCHCTILLVQGHCFQVR 130
           +KLDVRGDIYGILAAHPVALLVSHCHCTILLVQGHCFQV+
Sbjct: 1   MKLDVRGDIYGILAAHPVALLVSHCHCTILLVQGHCFQVK 40
[Close]
BLAST of Spo19532.1 vs. NCBI nr
Match: gi|902091485|gb|KNA03342.1| (hypothetical protein SOVF_210080 [Spinacia oleracea])

HSP 1 Score: 75.5 bits (184), Expect = 1.200e-10
Identity = 41/83 (49.40%), Postives = 51/83 (61.45%), Query Frame = 1 

		  

Query: 141 LSFLESDGNPVEAEVSLGDMLGMGVLPNAHLYKLISA---------------------NI 200
           ++ L  +G  VEAEV  GDM+G GVLPNAH+Y +I A                     N+
Sbjct: 430 INSLCKEGKLVEAEVCFGDMVGRGVLPNAHIYNMIIAGQFDAGNLPAALGLFDEMLRNNV 489

Query: 201 VPTLVTYNTLIIGLCKNGELQES 203
           VPTLVTYNTLI GLCKNG+LQ++
Sbjct: 490 VPTLVTYNTLISGLCKNGKLQKA 512
[Close]
BLAST of Spo19532.1 vs. NCBI nr
Match: gi|731361153|ref|XP_010692200.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g12100, mitochondrial isoform X1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 71.2 bits (173), Expect = 2.300e-9
Identity = 38/83 (45.78%), Postives = 51/83 (61.45%), Query Frame = 1 

		  

Query: 141 LSFLESDGNPVEAEVSLGDMLGMGVLPNAHLYKLISA---------------------NI 200
           ++ L  DG  +EA+++LGDM+G GVLPNA +Y +I A                     N+
Sbjct: 496 INSLCKDGKLLEAQIALGDMVGRGVLPNAQIYNMIIAGQCNAGKFQAAFGLYHEMLRNNV 555

Query: 201 VPTLVTYNTLIIGLCKNGELQES 203
           VPTLVTYN+LI GLCK G+LQE+
Sbjct: 556 VPTLVTYNSLISGLCKKGKLQEA 578
[Close]
BLAST of Spo19532.1 vs. NCBI nr
Match: gi|731361155|ref|XP_010692201.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g12100, mitochondrial isoform X2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 71.2 bits (173), Expect = 2.300e-9
Identity = 38/83 (45.78%), Postives = 51/83 (61.45%), Query Frame = 1 

		  

Query: 141 LSFLESDGNPVEAEVSLGDMLGMGVLPNAHLYKLISA---------------------NI 200
           ++ L  DG  +EA+++LGDM+G GVLPNA +Y +I A                     N+
Sbjct: 496 INSLCKDGKLLEAQIALGDMVGRGVLPNAQIYNMIIAGQCNAGKFQAAFGLYHEMLRNNV 555

Query: 201 VPTLVTYNTLIIGLCKNGELQES 203
           VPTLVTYN+LI GLCK G+LQE+
Sbjct: 556 VPTLVTYNSLISGLCKKGKLQEA 578
[Close]
BLAST of Spo19532.1 vs. NCBI nr
Match: gi|902163658|gb|KNA06866.1| (hypothetical protein SOVF_177140 [Spinacia oleracea])

HSP 1 Score: 70.5 bits (171), Expect = 3.900e-9
Identity = 40/85 (47.06%), Postives = 51/85 (60.00%), Query Frame = 1 

		  

Query: 139 TRLSFLESDGNPVEAEVSLGDMLGMGVLPNAHLYKLISA--------------------- 198
           T ++ L  +G  +EAEV L DM+G GVLPNA +Y +I A                     
Sbjct: 423 TLINSLCKEGKLLEAEVCLRDMVGRGVLPNAQIYNMIIAGQFDAGNLPAALGLFDEMLRN 482

Query: 199 NIVPTLVTYNTLIIGLCKNGELQES 203
           N+VPTLVTYN+LI GLCKNG+LQE+
Sbjct: 483 NVVPTLVTYNSLINGLCKNGKLQEA 507
[Close]
BLAST of Spo19532.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RHM5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_065810 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.400e-13
Identity = 38/40 (95.00%), Postives = 40/40 (100.00%), Query Frame = 1 

		  

Query: 90  VKLDVRGDIYGILAAHPVALLVSHCHCTILLVQGHCFQVR 130
           +KLDVRGDIYGILAAHPVALLVSHCHCTILLVQGHCFQV+
Sbjct: 1   MKLDVRGDIYGILAAHPVALLVSHCHCTILLVQGHCFQVK 40
[Close]
BLAST of Spo19532.1 vs. UniProtKB/TrEMBL
Match: A0A0K9Q7U5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_210080 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 8.400e-11
Identity = 41/83 (49.40%), Postives = 51/83 (61.45%), Query Frame = 1 

		  

Query: 141 LSFLESDGNPVEAEVSLGDMLGMGVLPNAHLYKLISA---------------------NI 200
           ++ L  +G  VEAEV  GDM+G GVLPNAH+Y +I A                     N+
Sbjct: 430 INSLCKEGKLVEAEVCFGDMVGRGVLPNAHIYNMIIAGQFDAGNLPAALGLFDEMLRNNV 489

Query: 201 VPTLVTYNTLIIGLCKNGELQES 203
           VPTLVTYNTLI GLCKNG+LQ++
Sbjct: 490 VPTLVTYNTLISGLCKNGKLQKA 512
[Close]
BLAST of Spo19532.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BFC0_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g018830 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.600e-9
Identity = 38/83 (45.78%), Postives = 51/83 (61.45%), Query Frame = 1 

		  

Query: 141 LSFLESDGNPVEAEVSLGDMLGMGVLPNAHLYKLISA---------------------NI 200
           ++ L  DG  +EA+++LGDM+G GVLPNA +Y +I A                     N+
Sbjct: 496 INSLCKDGKLLEAQIALGDMVGRGVLPNAQIYNMIIAGQCNAGKFQAAFGLYHEMLRNNV 555

Query: 201 VPTLVTYNTLIIGLCKNGELQES 203
           VPTLVTYN+LI GLCK G+LQE+
Sbjct: 556 VPTLVTYNSLISGLCKKGKLQEA 578
[Close]
BLAST of Spo19532.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QJW9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_177140 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.700e-9
Identity = 40/85 (47.06%), Postives = 51/85 (60.00%), Query Frame = 1 

		  

Query: 139 TRLSFLESDGNPVEAEVSLGDMLGMGVLPNAHLYKLISA--------------------- 198
           T ++ L  +G  +EAEV L DM+G GVLPNA +Y +I A                     
Sbjct: 423 TLINSLCKEGKLLEAEVCLRDMVGRGVLPNAQIYNMIIAGQFDAGNLPAALGLFDEMLRN 482

Query: 199 NIVPTLVTYNTLIIGLCKNGELQES 203
           N+VPTLVTYN+LI GLCKNG+LQE+
Sbjct: 483 NVVPTLVTYNSLINGLCKNGKLQEA 507
[Close]
BLAST of Spo19532.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QEA9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_194190 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.300e-8
Identity = 37/83 (44.58%), Postives = 52/83 (62.65%), Query Frame = 1 

		  

Query: 141 LSFLESDGNPVEAEVSLGDMLGMGVLPNAHLYKLISA---------------------NI 200
           ++ L  +G  +EAEVSL DM+G GVLPNAH+Y +I A                     ++
Sbjct: 302 INSLCKEGKLLEAEVSLRDMVGRGVLPNAHVYNMIIAGQCNAGNLPAALGLFDEMLRNSV 361

Query: 201 VPTLVTYNTLIIGLCKNGELQES 203
           +PTLVTYN+LI GLCK+G++QE+
Sbjct: 362 LPTLVTYNSLINGLCKHGKIQEA 384
[Close]
BLAST of Spo19532.1 vs. TAIR (Arabidopsis)
Match: AT5G55960.1 (unknown protein)

HSP 1 Score: 48.9 bits (115), Expect = 4.300e-6
Identity = 22/26 (84.62%), Postives = 25/26 (96.15%), Query Frame = 1 

		  

Query: 16  DIPGHSAYLTGLSIIGGMTLFPSAVE 42
           DIPG +AYLTGLSIIGG+TLFPSA+E
Sbjct: 592 DIPGSNAYLTGLSIIGGVTLFPSALE 617
The following BLAST results are available for this feature:
BLAST of Spo19532.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902221717|gb|KNA18980.1|2.0e-1395.0hypothetical protein SOVF_0658... [more]
gi|902091485|gb|KNA03342.1|1.2e-1049.4hypothetical protein SOVF_2100... [more]
gi|731361153|ref|XP_010692200.1|2.3e-945.7PREDICTED: pentatricopeptide r... [more]
gi|731361155|ref|XP_010692201.1|2.3e-945.7PREDICTED: pentatricopeptide r... [more]
gi|902163658|gb|KNA06866.1|3.9e-947.0hypothetical protein SOVF_1771... [more]
back to top
BLAST of Spo19532.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RHM5_SPIOL1.4e-1395.0Uncharacterized protein OS=Spi... [more]
A0A0K9Q7U5_SPIOL8.4e-1149.4Uncharacterized protein OS=Spi... [more]
A0A0J8BFC0_BETVU1.6e-945.7Uncharacterized protein OS=Bet... [more]
A0A0K9QJW9_SPIOL2.7e-947.0Uncharacterized protein OS=Spi... [more]
A0A0K9QEA9_SPIOL1.3e-844.5Uncharacterized protein OS=Spi... [more]
back to top
BLAST of Spo19532.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Spo19532.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT5G55960.14.3e-684.6unknown protein[more]
back to top
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF12854PPR_1coord: 178..201
score: 5.
IPR002885Pentatricopeptide repeatTIGRFAMsTIGR00756TIGR00756coord: 184..201
score: 6.