Spo11693.1 (mRNA) | SpinachBase

Overview


Name	Spo11693.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	SpoScf_03239 : 4351 .. 7380 (-)
Sequence length	1246

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTACTTCGTGCCTTCGCTCTTCGCTGAATTGGGGTGACTCGCAAAGCGCGCTGCTCCGTGTCTTCGCTGCTTCACGAATCAGGACCACCGGGCACCAAGCCTGAGTTCCTGGCGGCAAATGGTTGGCGGCGGACGACTAGAGACCTGAGACCACGCAAGTCACGACTCCATACTCGCGTGTCACGACCCAATACCATCGCCCCCTGAGGTGCCTTAATTTCATTTTTTAATTTCAGATTTTCAGGTAACCTACTTTAAATCATAATTCAGTTTCCAGTTTTTTGTGTTTTTGGCGTAACTAATTTGTTTGCGGTTTTGGGGTTGACTTTCCAGCAATGATGAAATGATTGTCAATTCTCTAAATATAAGTATTGTGTATCATGGGGTGTATAAATGTTGATTGTAGAAAAGTTTTATCATGTTGTCTTTTGATTTATTGACCGATTAGTCTATCTCCAATAGAAGTGGAAAAACTCTTTTTAGAATTATGTTCTTTTGCTATTGGTGTTAATTGAATTGTCTTTGTGGTTTTAAATCCTTATTGAGTTATTATAGTCTTCCGAGTGCCTTGATTCTCTCTTTGGATTTCTTTTGTATTGATGACTCTGTATTTTCTAAATTAGTGTTCATGTTGATCTGAACTCCCTCTCCTTTCAATTTTTTTTTATTACAGTTATATTTTCTTTTATGTGATTGTTATGATTGAAATTTCTTTTTTGTTTTTAGTTTCTTGAACATTAATTCAATGGTTGTGTTAGCTAAACGAGATATTTTCATTGGATGCAGTATTCATAAGGTTTCTAATTAATTGTTTCAGGTGGTCAATGTATCATCACCCATGGACTATGTCCGTTCCAAGGAAGAAAACAGCTTAAGGATCTTGAAAAGAAGGTTGTCTTCTAGTCTTAATCTTGTTTCTCAACACTTTGCTTCTAGCTTACTACTAATGCATCTTTAGATCAATGGTCTTTTCTCGGAAATTCCACTTACTGAACGTTGATACTGGCATACGATGTCTGCTTTTGCATTGCCTTCTTGCCTTGTGCAGATATTTATTTGGCTGCTTTATTGTCCTGGCTTACCATTTCACCTCTTTATTGCAGTTGGAGCTTCTTCTGCATCTGCAACACCTGCTGGTATACGACTGTGAATGTTCAGTTTGGACTGTAAGTTGCCATGTAGCTTTTTTGAATTGACGTTGTCTTGGCATTCTGTGTTGTGCTGCAGTGGTCTGAAAGACGAAAATTTAAATTGTCAAATTTATGTCCTCTATTATGAAGCAAAGACATTTATCAAGCAGGTTTGTGGACAAACTTCTTTATTTGGATTTTGTAGGATTCTTCATTTCAATAAGTTGTTCAAGTGAGCACTTGGATATAAATAGGGGAAATTGTTATTGGAAATATTGGTGACTAGAGAGTTGTGCTACGATCCATACATAGTGATAGTTTACAACTTTACATGATGATGTCTAGTGGAGCTAAGTAGCTAACTACTTGTCTTCATTAGATGATTTTAACAATGCACTTGTTTAATGAGGAATATGTTATTGAGGAAACCCGAGGGCTATTGCACCAGTCTTCAGACTAGGATAGAAAACGCTTGAGTTAAGGACATTGTAGACTGAGGACCTATTATTTTCTACTTGTGTGAACTTTCAATTATAAGGAAGTCCTTGTATGCAAATCAAGTATTTCAATTATAATATTACTAAGGTATTACAATTATCACATTACCCCTCACCCCCGAATATTCCATTGTAGATCATTCTTTTGGTTCTCATCCTTAAATATCCGAAGCAGAGAGAAATAAGAAGCCTGGAGGTTGTGTTTTTGCGCTTCAAGATGAACAGTTGCAGGCCAATCAATAGTGCACGCAAAGCACCATGACCACAATGCAGCAACGCTGCAAGCACCCAATAGAGAACAACAATCACCAGCACCATTGTGCAGAAGCAATCTGGAAAACAACTGCACAATAGCAGCACCTGCAACAATAGAACAAAGCTCACAACTATGCTGCAGATCACAGTGGCAAAAAACCCAAAATACAGCACTAAAACACCCGCACACAGCAGACCTGAAATCTGCAACCAGAACAAAACAGCAGCATAACACAACCTAAAAAAACAGAGGGAATTCCGGAGTGCAAGATGAAGTTTCTTTAGTTGCGCGAACGCAGGGCTTTTGCTGCTCTCCTACGTACTGATGTGCAGGCTATCCTACGTATTGAATGCCGTCTAGCAAGAATGCAGGATGGAAAGAAATAATCTTCTAGTTGTGCACATCAGTTTGAGTGGCTTCAGTCTACTATTTAAGGTACACATTCTGATTTTGTATTAGTCTTTCTATTTAATTTCAATGACTGTTTTATGAATTACTTTGAGGGCTAGAAATCTAGAATCACCTCCAAGGTCTCAGACATTAGTCCTGACTATCAAGTTTTTATTTTTTTTATTTCGTAAACTTTATTATATATTTATATATGCATGAACATATTCATATGTTGAAGTATTATGCTATAAGGTTTATAATTGTTTATTTTGTTACATGATTTACAGATTGTGCACCCAACAAGTTTGTGCTTCAAACTACCTGATTAGTGATTACATGAGTTTGGAAGAAGGAGCAATGTGTGAACCTCTAAGCGTTGGTGTCTACAGTTGCCCGTCGAGCTGAGGTTGGGGCTAAGGCTATAGTTTTTATCATTGGAGCGGGAATCAAGCAGTTTAAAAATGGAGATGTAAATCAGTTGGCCTATTTCAACAGTTACACCTTCATTCGCGCAAACACCGGAGTGCAATCAAGCTGAAGTTTCTCCAGTCGCGCGAACACCGTCCTTTTGCTGCTCTCCTACATACTGATGTGCAAGCTCATTAAGAACACCACGGGCTTGGAAGAAGGGGAAGGGTATTGTTGCGTCATGTTATTGTTTTTTTCTTTCCATTTTTTAAATGCTAGTAGTAACTTGTAAAATGTACGTTATTTTTTAATATATTTAATTAATGCTTGTTTTGAAAAAAAAAA

mRNA sequence

ATGACTACTTCGTGCCTTCGCTCTTCGCTGAATTGGGATTTTCAGGTGGTCAATGTATCATCACCCATGGACTATGTCCGTTCCAAGGAAGAAAACAGCTTAAGGATCTTGAAAAGAAGTTGGAGCTTCTTCTGCATCTGCAACACCTGCTGTGGTCTGAAAGACGAAAATTTAAATTGTCAAATTTATGTCCTCTATTATGAAGCAAAGACATTTATCAAGCAGATCATTCTTTTGGTTCTCATCCTTAAATATCCGAAGCAGAGAGAAATAAGAAGCCTGGAGGTTGTGTTTTTGCGCTTCAAGATGAACAGTTGCAGGCCAATCAATAGTGCACGCAAAGCACCATGACCACAATGCAGCAACGCTGCAAGCACCCAATAGAGAACAACAATCACCAGCACCATTGTGCAGAAGCAATCTGGAAAACAACTGCACAATAGCAGCACCTGCAACAATAGAACAAAGCTCACAACTATGCTGCAGATCACAGTGGCAAAAAACCCAAAATACAGCACTAAAACACCCGCACACAGCAGACCTGAAATCTGCAACCAGAACAAAACAGCAGCATAACACAACCTAAAAAAACAGAGGGAATTCCGGAGTGCAAGATGAAGTTTCTTTAGTTGCGCGAACGCAGGGCTTTTGCTGCTCTCCTACGTACTGATGTGCAGGCTATCCTACGTATTGAATGCCGTCTAGCAAGAATGCAGGATGGAAAGAAATAATCTTCTAGTTGTGCACATCAGTTTGAGTGGCTTCAGTCTACTATTTAAGATTGTGCACCCAACAAGTTTGTGCTTCAAACTACCTGATTAGTGATTACATGAGTTTGGAAGAAGGAGCAATGTGTGAACCTCTAAGCGTTGGTGTCTACAGTTGCCCGTCGAGCTGAGGTTGGGGCTAAGGCTATAGTTTTTATCATTGGAGCGGGAATCAAGCAGTTTAAAAATGGAGATGTAAATCAGTTGGCCTATTTCAACAGTTACACCTTCATTCGCGCAAACACCGGAGTGCAATCAAGCTGAAGTTTCTCCAGTCGCGCGAACACCGTCCTTTTGCTGCTCTCCTACATACTGATGTGCAAGCTCATTAAGAACACCACGGGCTTGGAAGAAGGGGAAGGGTATTGTTGCGTCATGTTATTGTTTTTTTCTTTCCATTTTTTAAATGCTAGTAGTAACTTGTAAAATGTACGTTATTTTTTAATATATTTAATTAATGCTTGTTTTGAAAAAAAAAA

Coding sequence (CDS)

ATGACTACTTCGTGCCTTCGCTCTTCGCTGAATTGGGATTTTCAGGTGGTCAATGTATCATCACCCATGGACTATGTCCGTTCCAAGGAAGAAAACAGCTTAAGGATCTTGAAAAGAAGTTGGAGCTTCTTCTGCATCTGCAACACCTGCTGTGGTCTGAAAGACGAAAATTTAAATTGTCAAATTTATGTCCTCTATTATGAAGCAAAGACATTTATCAAGCAGATCATTCTTTTGGTTCTCATCCTTAAATATCCGAAGCAGAGAGAAATAAGAAGCCTGGAGGTTGTGTTTTTGCGCTTCAAGATGAACAGTTGCAGGCCAATCAATAGTGCACGCAAAGCACCATGA

Protein sequence

MTTSCLRSSLNWDFQVVNVSSPMDYVRSKEENSLRILKRSWSFFCICNTCCGLKDENLNCQIYVLYYEAKTFIKQIILLVLILKYPKQREIRSLEVVFLRFKMNSCRPINSARKAP

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo11693	Spo11693	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo11693.1	Spo11693.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo11693.1.CDS.6	Spo11693.1.CDS.6	CDS
Spo11693.1.CDS.5	Spo11693.1.CDS.5	CDS
Spo11693.1.CDS.4	Spo11693.1.CDS.4	CDS
Spo11693.1.CDS.3	Spo11693.1.CDS.3	CDS
Spo11693.1.CDS.2	Spo11693.1.CDS.2	CDS
Spo11693.1.CDS.1	Spo11693.1.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo11693.1.utr3p.2	Spo11693.1.utr3p.2	three_prime_UTR
Spo11693.1.utr3p.1	Spo11693.1.utr3p.1	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo11693.1.exon.7	Spo11693.1.exon.7	exon
Spo11693.1.exon.6	Spo11693.1.exon.6	exon
Spo11693.1.exon.5	Spo11693.1.exon.5	exon
Spo11693.1.exon.4	Spo11693.1.exon.4	exon
Spo11693.1.exon.3	Spo11693.1.exon.3	exon
Spo11693.1.exon.2	Spo11693.1.exon.2	exon
Spo11693.1.exon.1	Spo11693.1.exon.1	exon

Homology

[Close]

BLAST of Spo11693.1 vs. NCBI nr
Match: gi|902186869|gb|KNA10796.1| (hypothetical protein SOVF_140990 isoform A [Spinacia oleracea])

HSP 1 Score: 64.7 bits (156), Expect = 1.200e-7
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 1

		  
Query: 23 MDYVRSKEENSLRILKRSWSFFCICNTC 51
          MDYVRSKEENSLRILKRSWSFFCICNTC
Sbjct: 1  MDYVRSKEENSLRILKRSWSFFCICNTC 28

[Close]

BLAST of Spo11693.1 vs. NCBI nr
Match: gi|902186870|gb|KNA10797.1| (hypothetical protein SOVF_140990 isoform B [Spinacia oleracea])

HSP 1 Score: 64.7 bits (156), Expect = 1.200e-7
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 1

		  
Query: 23 MDYVRSKEENSLRILKRSWSFFCICNTC 51
          MDYVRSKEENSLRILKRSWSFFCICNTC
Sbjct: 1  MDYVRSKEENSLRILKRSWSFFCICNTC 28

[Close]

BLAST of Spo11693.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QWA9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_140990 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 8.500e-8
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 1

		  
Query: 23 MDYVRSKEENSLRILKRSWSFFCICNTC 51
          MDYVRSKEENSLRILKRSWSFFCICNTC
Sbjct: 1  MDYVRSKEENSLRILKRSWSFFCICNTC 28

[Close]

BLAST of Spo11693.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QU30_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_140990 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 8.500e-8
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 1

		  
Query: 23 MDYVRSKEENSLRILKRSWSFFCICNTC 51
          MDYVRSKEENSLRILKRSWSFFCICNTC
Sbjct: 1  MDYVRSKEENSLRILKRSWSFFCICNTC 28

The following BLAST results are available for this feature:

BLAST of Spo11693.1 vs. NCBI nr
BLAST of Spo11693.1 vs. UniProtKB/TrEMBL
BLAST of Spo11693.1 vs. ExPASy Swiss-Prot
BLAST of Spo11693.1 vs. TAIR (Arabidopsis)

BLAST of Spo11693.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 2

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
gi\|902186869\|gb\|KNA10796.1\|	1.2e-7	100.	hypothetical protein SOVF_1409...	[more]
gi\|902186870\|gb\|KNA10797.1\|	1.2e-7	100.	hypothetical protein SOVF_1409...	[more]

BLAST of Spo11693.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 2

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0K9QWA9_SPIOL	8.5e-8	100.	Uncharacterized protein OS=Spi...	[more]
A0A0K9QU30_SPIOL	8.5e-8	100.	Uncharacterized protein OS=Spi...	[more]

BLAST of Spo11693.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo11693.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description