Spo17374.1 (mRNA)

Overview
NameSpo17374.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
Description40S ribosomal protein S18
LocationSpoScf_00146 : 451807 .. 463089 (-)
Sequence length1017
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGTGCGCCCAAAGCTTGTCATCGAAGCCAGGAGGAGGAGATTATGGATTGTTCGATTCCTCCAACCTCTTATGCACCTCAGTCTTATGGCGCTTCTGCATCAAATTTTGCGCACCATCGTCGAAGCCCAAGACGTCGTCTCCGACATAATAGCTACTCTCCTGCGGTTGGATTCGCACGAGGTTCGCCCTGCCGCCCTGCTACTATTGCAACAATAATCGTTAGTTTCCATCACCATTCCTTCCTCCATCTCCCTCCTCCGATTTCACCTAAAAATTAGAGAGAAAAACTTAATTTTCTTAAAAGAAAACAAAATTTCTCTCTTCTTCTGCCGTTTGAACTGATGGGCATCAATTAAATTGCAGAAAAGTTAATTAATTGATAAAAATATATACTCAATGCAAAAGAAAGTATAAGAAATTGGAAGGAAGTAGCAATGCTCCATTTATCAATAGTCTGGAGATCGATATGCGAATTCTACTAAACACTAAATCAATTACCTATAACCATTAAAGAAATCTGATCGCCGACCATGGATCGATGTTATGCTCAACCCTAGTCATCTGATTTGCAAGCTAACTTCTTGTGAGAAGGAAACTGCTATGAAGAAAGCAAACGGAAGAGGGCGGTTTAAGGGTTTGTGAATGAAAAAGCGCCCAAACGAATAAAAGATTAGCAGGCATAGCATTTAGCCGCATAGTAGCCCAATTCCTTTTATTAATTTATTTAAATTTTTATCTAGGCATTAAAACTGTTGCAATAAAATAGCCCTTAACTCAATAATCAATAAGTGTTGGTATAGTTTTTCAATAGCAACAGTTTTTTAAAGTCAAAGCCAAAGAAAATGAATAAATTTATAACCGTTACAATAGCACTGCTATAGCAACGCATATAAAACTGTTGCCAAAAATGGCGTTGCTAAAACCTTTTTTTCTGGTAGTGATTGAAAGATTATTATAAGGCTCTCGGCAGTAATATACAAGGAGATATAAAGCCTTCAAATATACCACTAGATGACATTTTTGTGAGCAAGTTTGGTGATTTTGGTATATGTCGTGTAATTTCACATTGTAAAACCACACTGTAGAACACTTGTGCTATTCTTGAAGGATTATATTCTAAAGGAAAATAGTGAGGGATTTTATCTACTAAGGAGAACACTTGTATTCTAAATGATTAATTTTGTTTTCATTCAATTAAATATATGAGTTTTGTTTTCTGCATTTGAGTTTTATGAGTCACTTTTTGATTATTTGGTCTGCTTCAATTGGATTCGATTGTTCATGTTCTATTGGCAGTTTGTTCATTTTCATAATTCTAAAATTAATTATGAAATGTGTCTTGGTTTTTAAAATAACATTTGGATTTGTTCTAAAGAACCGTTTATCTATTTGCTATTTTTTCTTAACGACTCTGACAGGCTTAAGTCGTATCACCTAATCAAAAATAACCTAAGTCCACTAGCTAGGTAGCAAGGGAAGTCAGGATCGAATCCACAGGGAAACAGGCGTTCTTTCTACTATCAATTAATTAATCTAGACTATTGGGAACAAGAGTTGGTTGGTGATTTGTATGCTAAGACTACGAACGATAATTAAACGAGTATGAATCAATATATTAAGGAATCCAGGGCATAGGTTCACCAACAAATAATAATCCAGGACAATGAACAATTACGATAATCGACAAGTAATTAATTAGACTAGCATGCTCTCTCGAATCGATACTAATCATAGACTTAGAATTAACGGGCTCTCGCTACGAATTAACTCTAATTCTACCTATTGGCACAAGCCTAAACATCAAATTGCATCTCTCGAATCTTAACTTGACATTGCATAACTACCACAATTAAACCTGCGCAAATCTAATTGTATAGTGAAATAAACCAATCAATAGGAATCAATTACAATGCCAACAATCATAACTATTCAATATCCATTCATATTAATCATGGATCCCCAAACCCTAGAAATTAGACTACTCTAGCATATTAACAATAAACAAAGCAATTAGCATGATTGAAAACATAATTAAGGCAAAACAAAAGATTGAAATAAAGAACAATACCTAATTGAAGAACAATGGCAAATGAAAGTTTGAATTTTTGATTGAAAATAAACTAAGTGTTTAGAACAAATTAGAGAGAAAAACTAAGTGTTTAATACTAGAATATGAGATAATAAGATGTCCTACTAAATTAACAAAGGCTATATTTATAGTTTAGCCTAAAAACACAAGAGAAAATCGGAATAAAACTAAAGTAAACCGCGCGCTAAAGGCTCCAGGGTTGGCCGCCCGACGGGCGACCAGCTCGAAATCCGCCCGACGGGCGCAGGGATGCCCGGCGGGCGGAGGGAGAAACTTCTAAAACATCTGCACGCGCCCGGTCGGGCGGCTCTCGCCCGCCGAGTGAAGAGAGAAAATGCGCTGATGCAGCTTCGATGGGCGCCCGATGGGCACCGGGCGAGACTCCGCCCGTCGGGCGCCTTCTGACGATCTGATCCTCTGTTTGCTCGCCCGATGGGCGAGGGGAGATCAACCGGGTGGGAAGCTCTTCGTCCGCAACACCGAGTCTAACTTCTGGGGCTCAATCATGAACATCTAAGGCTCCCGTAAGTCGACAAAAGTCGTCATGAACTCCCTCGGGATCATGTAGTGGCCTAAATCATCAAGAAACGGGCCTAAAAAGACCAATTTCTCACTAAGTATTCCTGAAACTCAAGGCACACTCAAATACACAGATTAGTACTAAAATGGCTCCTAAGAGCTCATTTGACGCATAAAAGTACTAAGGGACGGGGGTGAAAACACTATATAAAACGCACATATCAGACTTCAATTCTTTTTATAAATGATTTGTTACTGATATATCATTTTAATCTCGAAGTCGATAGATTTTTATAATAATACCCTAATAAGACCAACAATAATGAATAATTTGGTTGGCATGGAGGTTGAATTTGCATCCAAGCACAGAAATGCATAATCATGTCCAAACAAGGTATTAGAGCGAGGATACCAATATGGTATGGATATGGAGGAGATATATAAACCAAAAAGAATACGCCAATCTTCTAAAACAGTTCAGCAATGCAGTTTACCAAAATTAAGGTAGAGGAAATGTTGTAATGTATTCCTTCCTGTCTGAGTTCTGAAGTCGCAACCGAAGTATGTCATCGGCTCAGAACCCATAGCAGAGCAAAAGGAAGAAGACAACATATGAAAATTTTATTACTCTTATCCAGGTCCAAAGTCCACAAATAAAGGGGTCAATGCGAGTTAACTTGGTTCTAATTTCTAAAATCCAGATCAAGGAACAGGCCATTGCTGATCTTGCCACAACATCAAAGGTAGTTTTGTTCAACAATTCTCGGCAGATTACCACTAATAAGCTTCTATAGAAAATTCCCACCACTAAAATTTGTATTACTCCGTATTTAGAGTCACACAAACTGTAAACTGAATAAGAAGGTACAAAACAAGACATAGGTAACCGTTCTCAACATGTTTCATATTAAATAAATCCAACAACGACTTGCCATTGCCATTCATTAATCTCTACTTTATCACAAGCTTCTTACAATCTTTTCTATGTACTCGATCATATAGTATTATAAATTAATTTCATGGGTCTTTCTAGCTTGGTGCTCTTCATGTTTTAAGATATCAAATGGTTCATGTAGGTTGGTTCAAATGAAGAGAAGTATGTCTGTAGTTTATCATACAGGTATTCTTATAGAGATAAAAGTGTTATGATATGTTCTTAATGTGTTGAAAGAGGGTATGAAGAGGCAAACTATTTCCAAAACTTGGTGCTCACTAATCACTATGGTGGTTCTCTGATAGTTGTATAATAATTCCAGCTGGTAAGATGTCATGGCTTGGGTTACAGATGCGGGTGCAGTGGTGGTGCCATGGTGTGACAATCGCCGACAACGAGAGAGTGGAACGCGACAGAATTCCTAGCAGCAATTGCAAGTATGATTTTCTAATTAATTAATCTCATTCATGAAAAGGGAGAAGCGATTGGTGAAATTAGATCCATGTGATGAGCAGAGCTATGCTAGCAAAATTTACTTGGCCATGTGTAAAGGTTCAAAATCATGGTAACTTTGTCGTAGGAAACACAAAGAATGTCTCAGCAGACAACAAGACCCCTAAGTTTCATTTGGATCAATTAAGAGGCAAACACGNCCGACAACGAGAGAGTGGAACGCGACAGAATTCCTAGCAGCAATTGCAAGTATGATTTTCTAATTAATTAATCTCATTCATGAAAAGGGAGAAGCGATTGGTGAAATTAGATCCATGTGATGAGCTATGCTAGCAAAATTTACTTGGCCATGTGTAAAGGTTCAAAATCATGGTAACTTTGTCGTAGGAAACACAAAGAATGTCTCAGCAGACAACAAGACCCCTAAGTTTCATTTGGATCAAGAGGCAAACACGGCTTCCCTCCAATTCAGTTTGATGGTGGATAATGATGCCAATATTGAAAAAGCTCTTTATCCTGGTAAAAGGAAGAAGACAATTCCTGATTTACTTTATTGGCAGTGAAATTCAATTAAAGAGCAGTTGATTAATTTTGAAAACGTGACTTCTAAAGGAGAAAGGGAGAAAGCAGAGATCCCAAAATTTGATGAAAAATGTTTCTTCTTTTTGTCCCTATGCCCCCAATGATTATATATGTAGTGGTTAACTTATGTATGTATGAGTTGGACTCATGAACGCAAACATAAATCAAACGTAACTCATGCATATTTTTATTTTAGTATGGTCCTTAATTGCTATTTTTGTTGTCACTTGAAGCTTCTGTGCTCTTTTTTAAGTGTCCTGACACGAGAGCAGTAAGACTTTTTGGCAGTGCAGTGCTACATTTTGTGTGGTTAATTAGTTCTTTAAGTTGAGGCAATACTGTTTGTTAAACTAATTCCATTTCCATATATTTCCAGCACAATCAGTCTCATGGATTTTGTGATTTAGAATGACACATCTCCTTCTCAGGGAGCTCTTTATCCTGGTACTGGCTTTTGTAGTGAATTGTCCTCATCTCAATGGTCAGATTGGTTTATGTAAGTTGAAATGAATTTCTTATACTTTAGTCTTGCGAGTTTGCTATATAACCAAGTTTCTCATACTTATTCTCTCCCATCAAAACCATGCTTATATCTACTGCAGGACTGTCCACTAACGAGACATGCATCTTCATAATCGAGTTTGTAGTGTTTAATTGACTTTAATTGAGAGCAATATGTAGGACTGCTTATTCATAATCTGGAAGCAAAAGGGACACAAGTGGAGTCTTTTCCTACAATTCTTGCTCCAACTTTAAGGTAGTGGCTTCTGAGATGCCAAAATTGCTAGATGTGGAAGATCGAGGATATTTCATACGTTAAATAGATCGAATTGAATTTCTTCGTTATCAGATGGTGCATGACTGTTTATTTTATGAATGTATTCAATTTCAATAACAATAATCATTGCACCATTCTTTTTGTCTCTATTTTTACTGAATTTGTTATGTTTTTGGTTTGTGTTGACTACAATCACTAATTAACGATAATCATTGCACCGTGTTTTTCTTTCTAGATTTTTTTTTCACAATTTACAACTTGCTACGGTTACTAATTAACGATATGTTGCGTTGTCGACCTTCACACATTAATCTTACTTCCCTTCTGACCTATATTTTGAAAGAATCCACTTCGTATTTTGAAAGAATCCTCTTCGTATTTGTAACAAGCACAAAGTGGATATAAATACTCCGTATAATCTTATTATCATTATGATCGATGATATAAAATTACTTTAAAAGAAACACCAAAGTCGGGGTTAAAACTAGTTCTAATTAAAATCTGAAACTTTAAATTAAAATATTACTTTTTAAAATAAACAAAAGTAATATTGTAAAAGTCACGTGAAGCAAATGGGTACACACGATGTAGTACAATTAAGATGAAGTTAATTATATAATGCCCTAGATCATGGATGACGATAGCTACTCAAAGGCCGAAATGATGAATATCGTGAACGATAATCAATCTACTTTTTAAAATTTTAACATTGTCAATTGCAATTTGTTTAAAAATATTTTTTTGTGGAATATGAACATACAACACAACGTTTAAAAATAACATAGATCTCATTTTAACTCTTAACACAAATATCATATTTTTTTTTTAAACGAAAAATTACAGTTTTAAAAAGAACAGAGATCTAGCTTTAAGTCCAAAACCATTAATGAATTTATTTAAAAAATAAATAAATTAGAACATAGCTTTAGTTAAAAGAACAAATTAGACTTTTTAAAAGAACACAAATCTGATTTTAAGTCTAACATCATTAACACATTTAAATCTTAAAAAAAATAAAAAAAATCGAAAAGATACAGTTGGACCCCGAGTGACTTGGCTTTGAGTTGCCTTGGTCTTAGGAGGTGATGACCCTGTCTTGTATCCGACATTTCGAGGCATTCCGAATTGATGTGCCATGGGAGGTTTTGGGGTGATCGAAGTGACTTTTGAATTAGGTACTTCTATTTGGGTTATTATTGGTTGATCTGATTTTGGTGCTGTCATCAGGTGGTATCAGCCAGGATATTGCTAAATGTGCTCTAAATCATATTATTTCCAAATTCAAAAACCAAAACTTAAAATTGGTCTTCTTTAAATCATTGGTCATTTCTTAATTTTTATTTTTATGAATAAGTCAGGTGCTTTAAGGGGAATCATGAATTTTAAATTAGTCATATTGTTAATAATCATGTCCACTTTCGAAAACCGACAACAAAAACAAAAAAGTTTCATTTGTGATTTCCGTAATATGGTTCTTATTTTTCTTAAAGCAAAATTTTGGAAACAAAAATGATAGTAACGCCAAACGGGGCCTCCTCTCTCATAGAGCTAGGCATGGGTATGCCGATCACGCATGCTTCATATGTTCGACACGAAAGGCTCAACACAATAAAAGCCCGTTGTAAACCCGCACGACATGCACAACAATGAGCAATGGGCCGTGCATGGACATGATTTCATAAACTTTCCATGAGCACGATGGACCTCCACATGTCAACACGTTTTTTTTTAACAATTAACAAAATCTTAAAATTGGTAAAGGACTTCGCTAGCACGACCTGCCCGACACGACATTTGGGACAGGTCGTGCATGTGAATCATTCATTCATTTGTAGAAGAAAGACATGAGCCTGATACGAGTTTTCCTTATACCGTTCTAGATCAAGTGTAAGGGGCCCATTATTCACGCGAGCCTGACGTACACGGGGCCGTCACGTGCCTAGCTCTATCTCCTTCCTCCTCTTTCTTCATTAGGACTAGTCTTATGTGCACGCGATGCGTGCGAATATAAGAAACATATTTGTGTTATTACATTTAAACCTGAAATAACATGTAAAAATATAATATAAATGCGATGTGTTCGAATATACTATAAATGCGGTGCGAATATAAAAAACATATAATATAAACAGATTATAAGAAACGTTTTATCCGAGAAACATATATTATAAACAGAATATAGTATAAATGCGATGCGTTCGAATATAATATAATATAAATGCGGTGCGAATATAAGAAACATATAAGTTAGATATAGCTAAACGCATAAACAAATTGATTAAAATGCTAAAAATTTATTTACGAGAATAGATTGATTAAAATGCTTATTTGGGCTTTAATTATTGGGTAAATCGTCATTATATTCTCTATTCTATAATCGTGGAGGTTATTTCAATAATTTAAGGGGAACACCAATAATGAATTTACTAAAATAACCTCAATTTTTCACTTATATAACATATATAAATTTAACTTGAAAGAAAAACCGGAAAATAAAGTATATCAGACCGACGTCGTACTACCAGCTATCAGGGCGTCAGCGTTTTAAAAGCCAAAACCCTAATCTGCGAAAACATTTCTTCACTTACCAGCAGCCGCGTCGGAGCTCCACCCCCACAACCCATCTGCAATCATGGTTCGATCTCTCTCCTTTTTCTTAAAGAATTATGATAATAAATTCTTAATTTTTAGAAATAATTATCTGTTTGATTAATTTGCCTATATTTGTTGCAAAATTTATGAACAGTCTTTGGTAGCAAATGAAGATTTCCAGCACATTTTGCGTTTGTTGAACACCAACGTTGATGGAAAGCAGAAGATCATGTTCGCAATGACTTCAATTAAGGGTATTGGCCGTCGTTACGCCAACATTTGTTGCAAGAAGGCCGACATCGACATGAACAAAAGGTTTAATTTTTTTCTCCAAAACTAATATTTTTAGCACAATTTTCATCATTTTATTTCTGGGGTTGATGTTTTTTTTTTTTTTTTTTTTTTTAATTTTTATTTATAGAATGTTGAATGTAGAACATTACATGTCTATCAAAAAAAATAAAAAGCAAAAAGAACATTAGATTTCTGGGAATGTTATATTTAGGATAATTCTTAACTTATACTGCTCGTTTATTGATTATTGTTTTTGGGTCTGTTGATTGCTCTTAATTTAGGAATCAATTTGCTGCATCTTGTAGTTTAGCATAATTATTATGGAATTTTTTTGGGGTTTTGGAGTTTGTAGCTCTGCTACTTTATAATTTTTTGTTGTTTTAGAAAATTCAACATAATGTTTGTGATACGGAGTATTAATCATGCTTGATGCTTATTGTTACAGCTATATGAACTTTGATTTTGTTGGTTAAATGATGTTGGGAGGTTTGATGCTGTTTTTATTCAGTTGTTTTTGTCAGAATGATGTAAATATGCAAATTTTCAAGTGTATTGTTATGATTACTGCTATTGAGTAGAATATTAGCTTTTAGATTTAGAATACTCAGAGCCTAATTGCAGAGGTAACAGAGTAGAATTGCTTCTTCTATTTCATTGTTACAAGTCTGTTGATTTTAAATATCGCTGGCCTGGTTTATCATAGTCGTGTAGAGAAGCTTATTTAGGTTTTGAAGCCTTTGGCACCCAATTTTTCTCAGATTTGGACATTTGGTCATTGTCTTGGTTTGAACTTCTGTTACTGGAAGTGTTATTCCACAGTAGATTGTAGAAGTTGTTTTCACTATTCTATCTCAAATCCTTGGTGTATAGCTCTTGCCTAATTCTTCCATTGCAACAATCCTGTTTTGCTATGCATTGGTTTTGGTTGTATCGGCTATCAAAGGGTTTTTTAATTAATGAAGTTGAAGTTTATTTTCACCATTAAGCTTTCTACAAATCAATGCACATCATACTTCTAACATTGCTTTGAGCAATAATTCTCTGGAAGGATTGCTTCTAACGTTTCCCTTCCAGCTATTTCTCGTCAGTTTTAGTCTACCTTCCTCATTATTTGTTTTATATGGATAGGTACTACAAATTGACTGCCTCCTGAACCCTTAGACAAATTATGGGGTGACCTTACTTCTTCAAATGGTTAGCCATTGCTTAGTTTTAAAAAGCGCGCTTAAAGCCCTGGAAGCTCGGAAGTTCACAGAAGAACGCTTTTGCGCGCGCGCTTCCTAGCCCTTCTTTTTAATAAAAAAAATAAAGTCATGTGACTCTAATCTTCTTTTTTAAAGTATCACGTGATTCCTTTTTCTAAAAAAGTGAATATTTGGGGTTTTGAAAACCCTAGTGCAATTTTCTCCCGTAGCTAAATTTCTCTGGCCTTCTCGCCAAATTTCTCCGGTCGGATTCTGAATTTTTCTTTCATCTTTTCGATTCTCTTTTTTTTTTCATCTTTTTTTCCATATTTTCTCCATCTTTTCTGAACTTTTAATGCGCTTCGCCCGCAAAAAGCATGCGCTTAAGCTCCCGGTCCCTTTTGCGCTTCGGTGCGCTTCGCGCTTTTCCAAACTAAGAGCCATTGTAGTGTCAGGAGGATGGGCAGCAAGCCAGCAATGCAAGTCTAGATTCTGGCTGTAATGGCTCTTCTCTAAAGAAGAGGGTTGTGGTTGTGCTGAATGTACCTTTTTAACTTGTTGGGTGACTTAGGCCTGTGATATTTGGTGCTAAGCAACCGTTTGTGGGTTCCTTATAGTCGAACTTCTGATTTATGGCCTTCGATTTTTCTTTGTAAAACCTCTTTTGTCCTAGTATAATACTCCCTCCGTCCCGGAATACTTGACCTGTTTTCCTTATCGGGCCGTCCCTTAATACTTGACCTGTTTCTAAAAATGGAAATATTCTAACAATATTATATTATTTCTCACTCCACCCCTATTAACCCACCTACCCCCTACTCCATACAAAAAATAATTAAAAATTCAACTCCTACTCTCCCCCAACCCCACCTCTTAACCCACCTCCCACTAACTACATTAAAATAATACCCCACTATCAACTACTACCTATTAAACTAAATAAGTCAATTCAAGTCCCTTAAACTCTGTGTCGGTCAAACCGGGTCGAGTATTCCGGGACGGAGGGAGTACGTGTTTGTGCGCATTGAACAGGAATTTTCAGAGGACGATCAAGAGCATAATTGTATAACTGATTCTGGTGTTTTGCATATGTATCTGTTTCATTGGGGTTTGTCTATTCTGTACTTCAGTACATCAATTTAATAAGGCTTAATAATTGACCGAAGAAGATACCTTTGAAACTTGCACTTGTAATCCTTTATGCTTACAACATCCACTAATGTGCGATGCTGAGAAATATTGGAGAGTTCATAGTAGTCAGAAATAGAGGTTCTTGTTGATGAAAAATGAGATATGGGGGTTCTTACTTCTTAGTGATATGAAATTAGACACTTCTGAGTCCCCGAAGTATGCATATCTTTGCATACTATGAATGCATTAAATGGTTTCTGCTCTAGAACTTGTTTTTTTATGAATATCTTCCTGTGGTTTTCATATATAGAAGCTATCTCTAATCTGCAAACTTTGCTGCAGGGCTGGTGAACTGACAAATGCAGAGCTAGAAACTTTGATGACAGTTGTAGCAAATCCTAGGCAATTCAAAGTCCCAGACTGGTTTCTCAACAGACAGAAGGACTACAAGGATGGAAGATACAGTCAGGTTGTTTCTAACCAACTTGACATGAAACTCAGGGATGACCTTGAGCGTCTGAAGAAGATCAGGTGTGTTTTCTTTTACTGAATGCTTCATGTTACCATTGCTCTATGATACAAAATGCCTTTTTAACATTTTGAAAAACCTTGCAGAAACCACCGTGGTCTCCGTCACTACTGGGGTCTGAGAGTGCGTGGACAGCACACCAAGACTACTGGACGTAGGGGAAAGACTGTTGGTGTCTCCAAGAAGCGTTGA

mRNA sequence

ATGAAAGTGCGCCCAAAGCTTGTCATCGAAGCCAGGAGGAGGAGATTATGGATTGTTCGATTCCTCCAACCTCTTATGCACCTCAGTCTTATGGCGCTTCTGCATCAAATTTTGCGCACCATCGTCGAAGCCCAAGACGTCGTCTCCGACATAATAGCTACTCTCCTGCGGTTGGATTCGCACGAGATCAAGGAACAGGCCATTGCTGATCTTGCCACAACATCAAAGCTGGTAAGATGTCATGGCTTGGGTTACAGATGCGGGTGCAGTGGTGGTGCCATGGTTCAAAATCATGGTAACTTTGTCGTAGGAAACACAAAGAATGTCTCAGCAGACAACAAGACCCCTAAGTTTCATTTGGATCAAGAGGCAAACACGGCTTCCCTCCAATTCAGTTTGATGGTGGATAATGATGCCAATATTGAAAAAGCTCTTTATCCTGACCGACGTCGTACTACCAGCTATCAGGGCGTCAGCGTTTTAAAAGCCAAAACCCTAATCTGCGAAAACATTTCTTCACTTACCAGCAGCCGCGTCGGAGCTCCACCCCCACAACCCATCTGCAATCATGCAAATGAAGATTTCCAGCACATTTTGCGTTTGTTGAACACCAACGTTGATGGAAAGCAGAAGATCATGTTCGCAATGACTTCAATTAAGGGTATTGGCCGTCGTTACGCCAACATTTGTTGCAAGAAGGCCGACATCGACATGAACAAAAGGGCTGGTGAACTGACAAATGCAGAGCTAGAAACTTTGATGACAGTTGTAGCAAATCCTAGGCAATTCAAAGTCCCAGACTGGTTTCTCAACAGACAGAAGGACTACAAGGATGGAAGATACAGTCAGGTTGTTTCTAACCAACTTGACATGAAACTCAGGGATGACCTTGAGCGTCTGAAGAAGATCAGAAACCACCGTGGTCTCCGTCACTACTGGGGTCTGAGAGTGCGTGGACAGCACACCAAGACTACTGGACGTAGGGGAAAGACTGTTGGTGTCTCCAAGAAGCGTTGA

Coding sequence (CDS)

ATGAAAGTGCGCCCAAAGCTTGTCATCGAAGCCAGGAGGAGGAGATTATGGATTGTTCGATTCCTCCAACCTCTTATGCACCTCAGTCTTATGGCGCTTCTGCATCAAATTTTGCGCACCATCGTCGAAGCCCAAGACGTCGTCTCCGACATAATAGCTACTCTCCTGCGGTTGGATTCGCACGAGATCAAGGAACAGGCCATTGCTGATCTTGCCACAACATCAAAGCTGGTAAGATGTCATGGCTTGGGTTACAGATGCGGGTGCAGTGGTGGTGCCATGGTTCAAAATCATGGTAACTTTGTCGTAGGAAACACAAAGAATGTCTCAGCAGACAACAAGACCCCTAAGTTTCATTTGGATCAAGAGGCAAACACGGCTTCCCTCCAATTCAGTTTGATGGTGGATAATGATGCCAATATTGAAAAAGCTCTTTATCCTGACCGACGTCGTACTACCAGCTATCAGGGCGTCAGCGTTTTAAAAGCCAAAACCCTAATCTGCGAAAACATTTCTTCACTTACCAGCAGCCGCGTCGGAGCTCCACCCCCACAACCCATCTGCAATCATGCAAATGAAGATTTCCAGCACATTTTGCGTTTGTTGAACACCAACGTTGATGGAAAGCAGAAGATCATGTTCGCAATGACTTCAATTAAGGGTATTGGCCGTCGTTACGCCAACATTTGTTGCAAGAAGGCCGACATCGACATGAACAAAAGGGCTGGTGAACTGACAAATGCAGAGCTAGAAACTTTGATGACAGTTGTAGCAAATCCTAGGCAATTCAAAGTCCCAGACTGGTTTCTCAACAGACAGAAGGACTACAAGGATGGAAGATACAGTCAGGTTGTTTCTAACCAACTTGACATGAAACTCAGGGATGACCTTGAGCGTCTGAAGAAGATCAGAAACCACCGTGGTCTCCGTCACTACTGGGGTCTGAGAGTGCGTGGACAGCACACCAAGACTACTGGACGTAGGGGAAAGACTGTTGGTGTCTCCAAGAAGCGTTGA

Protein sequence

MKVRPKLVIEARRRRLWIVRFLQPLMHLSLMALLHQILRTIVEAQDVVSDIIATLLRLDSHEIKEQAIADLATTSKLVRCHGLGYRCGCSGGAMVQNHGNFVVGNTKNVSADNKTPKFHLDQEANTASLQFSLMVDNDANIEKALYPDRRRTTSYQGVSVLKAKTLICENISSLTSSRVGAPPPQPICNHANEDFQHILRLLNTNVDGKQKIMFAMTSIKGIGRRYANICCKKADIDMNKRAGELTNAELETLMTVVANPRQFKVPDWFLNRQKDYKDGRYSQVVSNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo17374Spo17374gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo17374.1Spo17374.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo17374.1.CDS.8Spo17374.1.CDS.8CDS
Spo17374.1.CDS.7Spo17374.1.CDS.7CDS
Spo17374.1.CDS.6Spo17374.1.CDS.6CDS
Spo17374.1.CDS.5Spo17374.1.CDS.5CDS
Spo17374.1.CDS.4Spo17374.1.CDS.4CDS
Spo17374.1.CDS.3Spo17374.1.CDS.3CDS
Spo17374.1.CDS.2Spo17374.1.CDS.2CDS
Spo17374.1.CDS.1Spo17374.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo17374.1.exon.8Spo17374.1.exon.8exon
Spo17374.1.exon.7Spo17374.1.exon.7exon
Spo17374.1.exon.6Spo17374.1.exon.6exon
Spo17374.1.exon.5Spo17374.1.exon.5exon
Spo17374.1.exon.4Spo17374.1.exon.4exon
Spo17374.1.exon.3Spo17374.1.exon.3exon
Spo17374.1.exon.2Spo17374.1.exon.2exon
Spo17374.1.exon.1Spo17374.1.exon.1exon


Homology
[Close]
BLAST of Spo17374.1 vs. NCBI nr
Match: gi|902221303|gb|KNA18890.1| (hypothetical protein SOVF_066930 [Spinacia oleracea])

HSP 1 Score: 301.2 bits (770), Expect = 2.300e-78
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 1 

		  

Query: 191 ANEDFQHILRLLNTNVDGKQKIMFAMTSIKGIGRRYANICCKKADIDMNKRAGELTNAEL 250
           ANEDFQHILRLLNTNVDGKQKIMFAMTSIKGIGRRYANICCKKADIDMNKRAGELTNAEL
Sbjct: 5   ANEDFQHILRLLNTNVDGKQKIMFAMTSIKGIGRRYANICCKKADIDMNKRAGELTNAEL 64

Query: 251 ETLMTVVANPRQFKVPDWFLNRQKDYKDGRYSQVVSNQLDMKLRDDLERLKKIRNHRGLR 310
           ETLMTVVANPRQFKVPDWFLNRQKDYKDGRYSQVVSNQLDMKLRDDLERLKKIRNHRGLR
Sbjct: 65  ETLMTVVANPRQFKVPDWFLNRQKDYKDGRYSQVVSNQLDMKLRDDLERLKKIRNHRGLR 124

Query: 311 HYWGLRVRGQHTKTTGRRGKTVGVSKKR 339
           HYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 125 HYWGLRVRGQHTKTTGRRGKTVGVSKKR 152
[Close]
BLAST of Spo17374.1 vs. NCBI nr
Match: gi|731374327|ref|XP_010666932.1| (PREDICTED: 40S ribosomal protein S18 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 292.4 bits (747), Expect = 1.000e-75
Identity = 143/148 (96.62%), Postives = 146/148 (98.65%), Query Frame = 1 

		  

Query: 191 ANEDFQHILRLLNTNVDGKQKIMFAMTSIKGIGRRYANICCKKADIDMNKRAGELTNAEL 250
           ANE+FQHILRLLNTNVDGKQKIMFAMTSIKGIGRRYANICCKKADIDMNKRAGELT AEL
Sbjct: 5   ANEEFQHILRLLNTNVDGKQKIMFAMTSIKGIGRRYANICCKKADIDMNKRAGELTAAEL 64

Query: 251 ETLMTVVANPRQFKVPDWFLNRQKDYKDGRYSQVVSNQLDMKLRDDLERLKKIRNHRGLR 310
           + LMTVVANPRQFKVPDWFLNRQKDYKDGRYSQV+SNQLDMKLRDDLERLKKIRNHRGLR
Sbjct: 65  DNLMTVVANPRQFKVPDWFLNRQKDYKDGRYSQVLSNQLDMKLRDDLERLKKIRNHRGLR 124

Query: 311 HYWGLRVRGQHTKTTGRRGKTVGVSKKR 339
           HYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 125 HYWGLRVRGQHTKTTGRRGKTVGVSKKR 152
[Close]
BLAST of Spo17374.1 vs. NCBI nr
Match: gi|731361198|ref|XP_010692226.1| (PREDICTED: 40S ribosomal protein S18-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 290.4 bits (742), Expect = 4.000e-75
Identity = 141/148 (95.27%), Postives = 146/148 (98.65%), Query Frame = 1 

		  

Query: 191 ANEDFQHILRLLNTNVDGKQKIMFAMTSIKGIGRRYANICCKKADIDMNKRAGELTNAEL 250
           ANE+FQHILRLLNTNVDGKQKIMFAMTSIKGIGRRYANICCKKADIDMNKRAGELT AEL
Sbjct: 5   ANEEFQHILRLLNTNVDGKQKIMFAMTSIKGIGRRYANICCKKADIDMNKRAGELTAAEL 64

Query: 251 ETLMTVVANPRQFKVPDWFLNRQKDYKDGRYSQVVSNQLDMKLRDDLERLKKIRNHRGLR 310
           + LMTVVANPRQFK+PDWFLNRQKDYKDGR+SQV+SNQLDMKLRDDLERLKKIRNHRGLR
Sbjct: 65  DNLMTVVANPRQFKIPDWFLNRQKDYKDGRFSQVLSNQLDMKLRDDLERLKKIRNHRGLR 124

Query: 311 HYWGLRVRGQHTKTTGRRGKTVGVSKKR 339
           HYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 125 HYWGLRVRGQHTKTTGRRGKTVGVSKKR 152
[Close]
BLAST of Spo17374.1 vs. NCBI nr
Match: gi|1012247114|ref|XP_015942550.1| (PREDICTED: 40S ribosomal protein S18 [Arachis duranensis])

HSP 1 Score: 285.4 bits (729), Expect = 1.300e-73
Identity = 138/148 (93.24%), Postives = 145/148 (97.97%), Query Frame = 1 

		  

Query: 191 ANEDFQHILRLLNTNVDGKQKIMFAMTSIKGIGRRYANICCKKADIDMNKRAGELTNAEL 250
           ANEDFQHILR+LNTNVDGKQKIMFAMTSIKGIGRR+ANICCKKADIDMNKRAGEL+ AEL
Sbjct: 5   ANEDFQHILRVLNTNVDGKQKIMFAMTSIKGIGRRFANICCKKADIDMNKRAGELSAAEL 64

Query: 251 ETLMTVVANPRQFKVPDWFLNRQKDYKDGRYSQVVSNQLDMKLRDDLERLKKIRNHRGLR 310
           + LMTVVANPRQFK+PDWFLNR+KDYKDG+YSQVVSN LDMKLRDDLERLKKIRNHRGLR
Sbjct: 65  DNLMTVVANPRQFKIPDWFLNRKKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLR 124

Query: 311 HYWGLRVRGQHTKTTGRRGKTVGVSKKR 339
           HYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 125 HYWGLRVRGQHTKTTGRRGKTVGVSKKR 152
[Close]
BLAST of Spo17374.1 vs. NCBI nr
Match: gi|922352409|ref|XP_013452021.1| (ribosomal protein S13P/S18e [Medicago truncatula])

HSP 1 Score: 284.6 bits (727), Expect = 2.200e-73
Identity = 137/148 (92.57%), Postives = 145/148 (97.97%), Query Frame = 1 

		  

Query: 191 ANEDFQHILRLLNTNVDGKQKIMFAMTSIKGIGRRYANICCKKADIDMNKRAGELTNAEL 250
           ANE+FQHILR+LNTNVDGKQKI FAMTSIKGIGRR+ANICCKKAD+DMNKRAGELT AEL
Sbjct: 5   ANEEFQHILRVLNTNVDGKQKIQFAMTSIKGIGRRFANICCKKADVDMNKRAGELTAAEL 64

Query: 251 ETLMTVVANPRQFKVPDWFLNRQKDYKDGRYSQVVSNQLDMKLRDDLERLKKIRNHRGLR 310
           E +MTVVANPRQFKVPDWFLNR+KDYKDG++SQVVSNQLDMKLRDDLERLKKIRNHRGLR
Sbjct: 65  ENIMTVVANPRQFKVPDWFLNRKKDYKDGKFSQVVSNQLDMKLRDDLERLKKIRNHRGLR 124

Query: 311 HYWGLRVRGQHTKTTGRRGKTVGVSKKR 339
           HYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 125 HYWGLRVRGQHTKTTGRRGKTVGVSKKR 152
[Close]
BLAST of Spo17374.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RHD4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_063420 PE=3 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 1.600e-78
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 1 

		  

Query: 191 ANEDFQHILRLLNTNVDGKQKIMFAMTSIKGIGRRYANICCKKADIDMNKRAGELTNAEL 250
           ANEDFQHILRLLNTNVDGKQKIMFAMTSIKGIGRRYANICCKKADIDMNKRAGELTNAEL
Sbjct: 5   ANEDFQHILRLLNTNVDGKQKIMFAMTSIKGIGRRYANICCKKADIDMNKRAGELTNAEL 64

Query: 251 ETLMTVVANPRQFKVPDWFLNRQKDYKDGRYSQVVSNQLDMKLRDDLERLKKIRNHRGLR 310
           ETLMTVVANPRQFKVPDWFLNRQKDYKDGRYSQVVSNQLDMKLRDDLERLKKIRNHRGLR
Sbjct: 65  ETLMTVVANPRQFKVPDWFLNRQKDYKDGRYSQVVSNQLDMKLRDDLERLKKIRNHRGLR 124

Query: 311 HYWGLRVRGQHTKTTGRRGKTVGVSKKR 339
           HYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 125 HYWGLRVRGQHTKTTGRRGKTVGVSKKR 152
[Close]
BLAST of Spo17374.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B411_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_005520 PE=3 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 7.300e-76
Identity = 143/148 (96.62%), Postives = 146/148 (98.65%), Query Frame = 1 

		  

Query: 191 ANEDFQHILRLLNTNVDGKQKIMFAMTSIKGIGRRYANICCKKADIDMNKRAGELTNAEL 250
           ANE+FQHILRLLNTNVDGKQKIMFAMTSIKGIGRRYANICCKKADIDMNKRAGELT AEL
Sbjct: 5   ANEEFQHILRLLNTNVDGKQKIMFAMTSIKGIGRRYANICCKKADIDMNKRAGELTAAEL 64

Query: 251 ETLMTVVANPRQFKVPDWFLNRQKDYKDGRYSQVVSNQLDMKLRDDLERLKKIRNHRGLR 310
           + LMTVVANPRQFKVPDWFLNRQKDYKDGRYSQV+SNQLDMKLRDDLERLKKIRNHRGLR
Sbjct: 65  DNLMTVVANPRQFKVPDWFLNRQKDYKDGRYSQVLSNQLDMKLRDDLERLKKIRNHRGLR 124

Query: 311 HYWGLRVRGQHTKTTGRRGKTVGVSKKR 339
           HYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 125 HYWGLRVRGQHTKTTGRRGKTVGVSKKR 152
[Close]
BLAST of Spo17374.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BJ24_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g019050 PE=3 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 2.800e-75
Identity = 141/148 (95.27%), Postives = 146/148 (98.65%), Query Frame = 1 

		  

Query: 191 ANEDFQHILRLLNTNVDGKQKIMFAMTSIKGIGRRYANICCKKADIDMNKRAGELTNAEL 250
           ANE+FQHILRLLNTNVDGKQKIMFAMTSIKGIGRRYANICCKKADIDMNKRAGELT AEL
Sbjct: 5   ANEEFQHILRLLNTNVDGKQKIMFAMTSIKGIGRRYANICCKKADIDMNKRAGELTAAEL 64

Query: 251 ETLMTVVANPRQFKVPDWFLNRQKDYKDGRYSQVVSNQLDMKLRDDLERLKKIRNHRGLR 310
           + LMTVVANPRQFK+PDWFLNRQKDYKDGR+SQV+SNQLDMKLRDDLERLKKIRNHRGLR
Sbjct: 65  DNLMTVVANPRQFKIPDWFLNRQKDYKDGRFSQVLSNQLDMKLRDDLERLKKIRNHRGLR 124

Query: 311 HYWGLRVRGQHTKTTGRRGKTVGVSKKR 339
           HYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 125 HYWGLRVRGQHTKTTGRRGKTVGVSKKR 152
[Close]
BLAST of Spo17374.1 vs. UniProtKB/TrEMBL
Match: G7IEW7_MEDTR (Ribosomal protein S13P/S18e OS=Medicago truncatula GN=MTR_6g043210 PE=2 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 1.500e-73
Identity = 137/148 (92.57%), Postives = 145/148 (97.97%), Query Frame = 1 

		  

Query: 191 ANEDFQHILRLLNTNVDGKQKIMFAMTSIKGIGRRYANICCKKADIDMNKRAGELTNAEL 250
           ANE+FQHILR+LNTNVDGKQKI FAMTSIKGIGRR+ANICCKKAD+DMNKRAGELT AEL
Sbjct: 5   ANEEFQHILRVLNTNVDGKQKIQFAMTSIKGIGRRFANICCKKADVDMNKRAGELTAAEL 64

Query: 251 ETLMTVVANPRQFKVPDWFLNRQKDYKDGRYSQVVSNQLDMKLRDDLERLKKIRNHRGLR 310
           E +MTVVANPRQFKVPDWFLNR+KDYKDG++SQVVSNQLDMKLRDDLERLKKIRNHRGLR
Sbjct: 65  ENIMTVVANPRQFKVPDWFLNRKKDYKDGKFSQVVSNQLDMKLRDDLERLKKIRNHRGLR 124

Query: 311 HYWGLRVRGQHTKTTGRRGKTVGVSKKR 339
           HYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 125 HYWGLRVRGQHTKTTGRRGKTVGVSKKR 152
[Close]
BLAST of Spo17374.1 vs. UniProtKB/TrEMBL
Match: B7FH21_MEDTR (Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 2.000e-73
Identity = 137/148 (92.57%), Postives = 145/148 (97.97%), Query Frame = 1 

		  

Query: 191 ANEDFQHILRLLNTNVDGKQKIMFAMTSIKGIGRRYANICCKKADIDMNKRAGELTNAEL 250
           ANE+FQHILR+LNTNVDGKQKI FAMTSIKGIGRR+ANICCKKAD+DMNKRAGELT AEL
Sbjct: 5   ANEEFQHILRVLNTNVDGKQKIQFAMTSIKGIGRRFANICCKKADVDMNKRAGELTVAEL 64

Query: 251 ETLMTVVANPRQFKVPDWFLNRQKDYKDGRYSQVVSNQLDMKLRDDLERLKKIRNHRGLR 310
           E +MTVVANPRQFKVPDWFLNR+KDYKDG++SQVVSNQLDMKLRDDLERLKKIRNHRGLR
Sbjct: 65  ENIMTVVANPRQFKVPDWFLNRKKDYKDGKFSQVVSNQLDMKLRDDLERLKKIRNHRGLR 124

Query: 311 HYWGLRVRGQHTKTTGRRGKTVGVSKKR 339
           HYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 125 HYWGLRVRGQHTKTTGRRGKTVGVSKKR 152
[Close]
BLAST of Spo17374.1 vs. ExPASy Swiss-Prot
Match: RS18_ARATH (40S ribosomal protein S18 OS=Arabidopsis thaliana GN=RPS18A PE=1 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 2.200e-73
Identity = 133/148 (89.86%), Postives = 143/148 (96.62%), Query Frame = 1 

		  

Query: 191 ANEDFQHILRLLNTNVDGKQKIMFAMTSIKGIGRRYANICCKKADIDMNKRAGELTNAEL 250
           ANE+FQHILR+LNTNVDGKQKIMFA+TSIKGIGRR ANI CKKAD+DMNKRAGEL+ AE+
Sbjct: 5   ANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAEI 64

Query: 251 ETLMTVVANPRQFKVPDWFLNRQKDYKDGRYSQVVSNQLDMKLRDDLERLKKIRNHRGLR 310
           + LMT+VANPRQFK+PDWFLNRQKDYKDG+YSQVVSN LDMKLRDDLERLKKIRNHRGLR
Sbjct: 65  DNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLR 124

Query: 311 HYWGLRVRGQHTKTTGRRGKTVGVSKKR 339
           HYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 125 HYWGLRVRGQHTKTTGRRGKTVGVSKKR 152
[Close]
BLAST of Spo17374.1 vs. ExPASy Swiss-Prot
Match: RS18_BRABE (40S ribosomal protein S18 OS=Branchiostoma belcheri GN=RPS18 PE=2 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 4.100e-64
Identity = 113/146 (77.40%), Postives = 137/146 (93.84%), Query Frame = 1 

		  

Query: 193 EDFQHILRLLNTNVDGKQKIMFAMTSIKGIGRRYANICCKKADIDMNKRAGELTNAELET 252
           E FQHILR++NTN+DG++KIMFA+TSIKG+GRRY+NI CKKADID++KRAGEL++ E+E 
Sbjct: 7   EKFQHILRVMNTNIDGRRKIMFALTSIKGVGRRYSNIVCKKADIDLSKRAGELSDEEVER 66

Query: 253 LMTVVANPRQFKVPDWFLNRQKDYKDGRYSQVVSNQLDMKLRDDLERLKKIRNHRGLRHY 312
           L+T++ NPRQ+K+PDWFLNRQKD KDG+YSQV++N LD KLR+DLERLKKIR HRGLRHY
Sbjct: 67  LITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVMANSLDNKLREDLERLKKIRAHRGLRHY 126

Query: 313 WGLRVRGQHTKTTGRRGKTVGVSKKR 339
           WGLRVRGQHTKTTGRRG+TVGVSKK+
Sbjct: 127 WGLRVRGQHTKTTGRRGRTVGVSKKK 152
[Close]
BLAST of Spo17374.1 vs. ExPASy Swiss-Prot
Match: RS18_ARGIR (40S ribosomal protein S18 OS=Argopecten irradians GN=RPS18 PE=2 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 3.500e-63
Identity = 111/146 (76.03%), Postives = 136/146 (93.15%), Query Frame = 1 

		  

Query: 193 EDFQHILRLLNTNVDGKQKIMFAMTSIKGIGRRYANICCKKADIDMNKRAGELTNAELET 252
           E FQHILR++NTN+DGK+KIMFAMT+IKG+GRRYAN+ CKKAD+D+ KRAGEL+  E+E 
Sbjct: 7   EKFQHILRVMNTNIDGKRKIMFAMTAIKGMGRRYANVVCKKADVDITKRAGELSEDEIER 66

Query: 253 LMTVVANPRQFKVPDWFLNRQKDYKDGRYSQVVSNQLDMKLRDDLERLKKIRNHRGLRHY 312
           ++T+++NPRQ+K+P+WFLNRQKD KDG+YSQV+SN LD KLR+DLERLKKIR HRGLRHY
Sbjct: 67  VITIMSNPRQYKIPNWFLNRQKDVKDGKYSQVMSNALDNKLREDLERLKKIRAHRGLRHY 126

Query: 313 WGLRVRGQHTKTTGRRGKTVGVSKKR 339
           WGLRVRGQHTKTTGRRG+TVGV+KK+
Sbjct: 127 WGLRVRGQHTKTTGRRGRTVGVAKKK 152
[Close]
BLAST of Spo17374.1 vs. ExPASy Swiss-Prot
Match: RS18_DANRE (40S ribosomal protein S18 OS=Danio rerio GN=rps18 PE=2 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 4.300e-61
Identity = 109/146 (74.66%), Postives = 134/146 (91.78%), Query Frame = 1 

		  

Query: 193 EDFQHILRLLNTNVDGKQKIMFAMTSIKGIGRRYANICCKKADIDMNKRAGELTNAELET 252
           E FQHILR+LNTN+DG++KI FA+T+IKG+GRRYA++  +KADID+NKRAGELT  E+E 
Sbjct: 7   EKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLNKRAGELTEDEVER 66

Query: 253 LMTVVANPRQFKVPDWFLNRQKDYKDGRYSQVVSNQLDMKLRDDLERLKKIRNHRGLRHY 312
           ++T++ NPRQ+K+PDWFLNRQKD KDG+YSQV++N LD KLR+DLERLKKIR HRGLRH+
Sbjct: 67  VVTIMQNPRQYKIPDWFLNRQKDIKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHF 126

Query: 313 WGLRVRGQHTKTTGRRGKTVGVSKKR 339
           WGLRVRGQHTKTTGRRG+TVGVSKK+
Sbjct: 127 WGLRVRGQHTKTTGRRGRTVGVSKKK 152
[Close]
BLAST of Spo17374.1 vs. ExPASy Swiss-Prot
Match: RS18_SPOFR (40S ribosomal protein S18 OS=Spodoptera frugiperda GN=RpS18 PE=2 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 4.300e-61
Identity = 107/146 (73.29%), Postives = 133/146 (91.10%), Query Frame = 1 

		  

Query: 193 EDFQHILRLLNTNVDGKQKIMFAMTSIKGIGRRYANICCKKADIDMNKRAGELTNAELET 252
           + FQHILR++NTN+DGK+K+MFAMT+IKG+GRRY+NI  KKADID++KRAGE T  E+E 
Sbjct: 7   DKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEK 66

Query: 253 LMTVVANPRQFKVPDWFLNRQKDYKDGRYSQVVSNQLDMKLRDDLERLKKIRNHRGLRHY 312
           ++T+++NPRQ+K+PDWFLNRQKD  DG+YSQ+ S+ LD KLR+DLERLKKIR HRG+RHY
Sbjct: 67  IVTIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHY 126

Query: 313 WGLRVRGQHTKTTGRRGKTVGVSKKR 339
           WGLRVRGQHTKTTGRRG+TVGVSKK+
Sbjct: 127 WGLRVRGQHTKTTGRRGRTVGVSKKK 152
[Close]
BLAST of Spo17374.1 vs. TAIR (Arabidopsis)
Match: AT1G22780.1 (Ribosomal protein S13/S18 family)

HSP 1 Score: 277.3 bits (708), Expect = 1.200e-74
Identity = 133/148 (89.86%), Postives = 143/148 (96.62%), Query Frame = 1 

		  

Query: 191 ANEDFQHILRLLNTNVDGKQKIMFAMTSIKGIGRRYANICCKKADIDMNKRAGELTNAEL 250
           ANE+FQHILR+LNTNVDGKQKIMFA+TSIKGIGRR ANI CKKAD+DMNKRAGEL+ AE+
Sbjct: 5   ANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAEI 64

Query: 251 ETLMTVVANPRQFKVPDWFLNRQKDYKDGRYSQVVSNQLDMKLRDDLERLKKIRNHRGLR 310
           + LMT+VANPRQFK+PDWFLNRQKDYKDG+YSQVVSN LDMKLRDDLERLKKIRNHRGLR
Sbjct: 65  DNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLR 124

Query: 311 HYWGLRVRGQHTKTTGRRGKTVGVSKKR 339
           HYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 125 HYWGLRVRGQHTKTTGRRGKTVGVSKKR 152
[Close]
BLAST of Spo17374.1 vs. TAIR (Arabidopsis)
Match: AT1G34030.1 (Ribosomal protein S13/S18 family)

HSP 1 Score: 277.3 bits (708), Expect = 1.200e-74
Identity = 133/148 (89.86%), Postives = 143/148 (96.62%), Query Frame = 1 

		  

Query: 191 ANEDFQHILRLLNTNVDGKQKIMFAMTSIKGIGRRYANICCKKADIDMNKRAGELTNAEL 250
           ANE+FQHILR+LNTNVDGKQKIMFA+TSIKGIGRR ANI CKKAD+DMNKRAGEL+ AE+
Sbjct: 5   ANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAEI 64

Query: 251 ETLMTVVANPRQFKVPDWFLNRQKDYKDGRYSQVVSNQLDMKLRDDLERLKKIRNHRGLR 310
           + LMT+VANPRQFK+PDWFLNRQKDYKDG+YSQVVSN LDMKLRDDLERLKKIRNHRGLR
Sbjct: 65  DNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLR 124

Query: 311 HYWGLRVRGQHTKTTGRRGKTVGVSKKR 339
           HYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 125 HYWGLRVRGQHTKTTGRRGKTVGVSKKR 152
[Close]
BLAST of Spo17374.1 vs. TAIR (Arabidopsis)
Match: AT4G09800.1 (S18 ribosomal protein)

HSP 1 Score: 277.3 bits (708), Expect = 1.200e-74
Identity = 133/148 (89.86%), Postives = 143/148 (96.62%), Query Frame = 1 

		  

Query: 191 ANEDFQHILRLLNTNVDGKQKIMFAMTSIKGIGRRYANICCKKADIDMNKRAGELTNAEL 250
           ANE+FQHILR+LNTNVDGKQKIMFA+TSIKGIGRR ANI CKKAD+DMNKRAGEL+ AE+
Sbjct: 5   ANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAEI 64

Query: 251 ETLMTVVANPRQFKVPDWFLNRQKDYKDGRYSQVVSNQLDMKLRDDLERLKKIRNHRGLR 310
           + LMT+VANPRQFK+PDWFLNRQKDYKDG+YSQVVSN LDMKLRDDLERLKKIRNHRGLR
Sbjct: 65  DNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLR 124

Query: 311 HYWGLRVRGQHTKTTGRRGKTVGVSKKR 339
           HYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 125 HYWGLRVRGQHTKTTGRRGKTVGVSKKR 152
The following BLAST results are available for this feature:
BLAST of Spo17374.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902221303|gb|KNA18890.1|2.3e-78100.hypothetical protein SOVF_0669... [more]
gi|731374327|ref|XP_010666932.1|1.0e-7596.6PREDICTED: 40S ribosomal prote... [more]
gi|731361198|ref|XP_010692226.1|4.0e-7595.2PREDICTED: 40S ribosomal prote... [more]
gi|1012247114|ref|XP_015942550.1|1.3e-7393.2PREDICTED: 40S ribosomal prote... [more]
gi|922352409|ref|XP_013452021.1|2.2e-7392.5ribosomal protein S13P/S18e [M... [more]
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BLAST of Spo17374.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RHD4_SPIOL1.6e-78100.Uncharacterized protein OS=Spi... [more]
A0A0J8B411_BETVU7.3e-7696.6Uncharacterized protein OS=Bet... [more]
A0A0J8BJ24_BETVU2.8e-7595.2Uncharacterized protein OS=Bet... [more]
G7IEW7_MEDTR1.5e-7392.5Ribosomal protein S13P/S18e OS... [more]
B7FH21_MEDTR2.0e-7392.5Putative uncharacterized prote... [more]
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BLAST of Spo17374.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RS18_ARATH2.2e-7389.840S ribosomal protein S18 OS=A... [more]
RS18_BRABE4.1e-6477.440S ribosomal protein S18 OS=B... [more]
RS18_ARGIR3.5e-6376.040S ribosomal protein S18 OS=A... [more]
RS18_DANRE4.3e-6174.640S ribosomal protein S18 OS=D... [more]
RS18_SPOFR4.3e-6173.240S ribosomal protein S18 OS=S... [more]
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BLAST of Spo17374.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3
Match NameE-valueIdentityDescription
AT1G22780.11.2e-7489.8Ribosomal protein S13/S18 fami... [more]
AT1G34030.11.2e-7489.8Ribosomal protein S13/S18 fami... [more]
AT4G09800.11.2e-7489.8S18 ribosomal protein[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001892Ribosomal protein S13HAMAPMF_01315Ribosomal_S13_S18coord: 198..337
score: 22
IPR001892Ribosomal protein S13PFAMPF00416Ribosomal_S13coord: 200..328
score: 9.5
IPR001892Ribosomal protein S13PROFILEPS50159RIBOSOMAL_S13_2coord: 201..331
score: 33
IPR010979Ribosomal protein S13-like, H2THunknownSSF46946S13-like H2TH domaincoord: 199..338
score: 1.06
IPR018269Ribosomal protein S13, conserved sitePROSITEPS00646RIBOSOMAL_S13_1coord: 307..320
scor
IPR02743730s ribosomal protein S13, C-terminalGENE3D4.10.910.10coord: 292..335
score: 7.5
NoneNo IPR availableGENE3D1.10.8.50coord: 198..269
score: 9.3
NoneNo IPR availablePANTHERPTHR1087130S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18coord: 191..338
score: 9.0E
NoneNo IPR availablePANTHERPTHR10871:SF640S RIBOSOMAL PROTEIN S18coord: 191..338
score: 9.0E

GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome