Spo27185.1 (mRNA) | SpinachBase

Overview


Name	Spo27185.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	SpoScf_03691 : 16873 .. 17439 (+)
Sequence length	567

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACATGTTTTCATGCCAAAAAGAATCAAACAACATTGAAGAATTTAGTTTTCCTGTTGTTTCTAACAACAACAACGTTAACCCATTATCAAACTTCATGTTATCGTCTTCCTCAGCATCGTCGTCGTCGTTATGGCGGATTTCGTCGAGGGTTTACCATCACCAAGAAGATTATAATTGTTATTATGAAGATCGTAAAGAGGAAGATGATGATCGTATGGAAGTTCGTAGTATGTGTGAAGAGATTACGCCGTGTTGGAGGGATGATATTGAAAGGAGCATGAGTTTTCAAGGCAAGGATGTGGTTGAGGTTGAAGAAAGCATGGATTATTTGTGGGAAGATTTTAATGGAGAAGAGGAGAAAGAGAAGTTTAAAGTGAGAAGAAGAAGAAGTAGTGAAGAAATTATGAGTTTTATGCAAGTCACTAAAATGGGTAGGGCTAGACCTAGTAGTAATAGTAGTAGTGGTGGTGGTACTAAAATGTTGGTTATTGGCAAGTTTTTGAAAGGACTTGTGTCATTTAGGAAGTCATCTCAACTCAAGTTTTCAAAACCAAGATTTTGA

mRNA sequence

ATGAACATGTTTTCATGCCAAAAAGAATCAAACAACATTGAAGAATTTAGTTTTCCTGTTGTTTCTAACAACAACAACGTTAACCCATTATCAAACTTCATGTTATCGTCTTCCTCAGCATCGTCGTCGTCGTTATGGCGGATTTCGTCGAGGGTTTACCATCACCAAGAAGATTATAATTGTTATTATGAAGATCGTAAAGAGGAAGATGATGATCGTATGGAAGTTCGTAGTATGTGTGAAGAGATTACGCCGTGTTGGAGGGATGATATTGAAAGGAGCATGAGTTTTCAAGGCAAGGATGTGGTTGAGGTTGAAGAAAGCATGGATTATTTGTGGGAAGATTTTAATGGAGAAGAGGAGAAAGAGAAGTTTAAAGTGAGAAGAAGAAGAAGTAGTGAAGAAATTATGAGTTTTATGCAAGTCACTAAAATGGGTAGGGCTAGACCTAGTAGTAATAGTAGTAGTGGTGGTGGTACTAAAATGTTGGTTATTGGCAAGTTTTTGAAAGGACTTGTGTCATTTAGGAAGTCATCTCAACTCAAGTTTTCAAAACCAAGATTTTGA

Coding sequence (CDS)

ATGAACATGTTTTCATGCCAAAAAGAATCAAACAACATTGAAGAATTTAGTTTTCCTGTTGTTTCTAACAACAACAACGTTAACCCATTATCAAACTTCATGTTATCGTCTTCCTCAGCATCGTCGTCGTCGTTATGGCGGATTTCGTCGAGGGTTTACCATCACCAAGAAGATTATAATTGTTATTATGAAGATCGTAAAGAGGAAGATGATGATCGTATGGAAGTTCGTAGTATGTGTGAAGAGATTACGCCGTGTTGGAGGGATGATATTGAAAGGAGCATGAGTTTTCAAGGCAAGGATGTGGTTGAGGTTGAAGAAAGCATGGATTATTTGTGGGAAGATTTTAATGGAGAAGAGGAGAAAGAGAAGTTTAAAGTGAGAAGAAGAAGAAGTAGTGAAGAAATTATGAGTTTTATGCAAGTCACTAAAATGGGTAGGGCTAGACCTAGTAGTAATAGTAGTAGTGGTGGTGGTACTAAAATGTTGGTTATTGGCAAGTTTTTGAAAGGACTTGTGTCATTTAGGAAGTCATCTCAACTCAAGTTTTCAAAACCAAGATTTTGA

Protein sequence

MNMFSCQKESNNIEEFSFPVVSNNNNVNPLSNFMLSSSSASSSSLWRISSRVYHHQEDYNCYYEDRKEEDDDRMEVRSMCEEITPCWRDDIERSMSFQGKDVVEVEESMDYLWEDFNGEEEKEKFKVRRRRSSEEIMSFMQVTKMGRARPSSNSSSGGGTKMLVIGKFLKGLVSFRKSSQLKFSKPRF

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo27185	Spo27185	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo27185.1	Spo27185.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo27185.1.exon.1	Spo27185.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo27185.1.CDS.1	Spo27185.1.CDS.1	CDS

Homology

[Close]

BLAST of Spo27185.1 vs. NCBI nr
Match: gi|902189965|gb|KNA11518.1| (hypothetical protein SOVF_134570 [Spinacia oleracea])

HSP 1 Score: 299.3 bits (765), Expect = 4.800e-78
Identity = 154/155 (99.35%), Postives = 154/155 (99.35%), Query Frame = 1

		  
Query: 34  MLSSSSASSSSLWRISSRVYHHQEDYNCYYEDRKEEDDDRMEVRSMCEEITPCWRDDIER 93
           MLSSSSASSSSLWRISSRVYHHQEDYNCYYEDRKEEDDDRMEVRSMCEEITPCWRDDIER
Sbjct: 1   MLSSSSASSSSLWRISSRVYHHQEDYNCYYEDRKEEDDDRMEVRSMCEEITPCWRDDIER 60

Query: 94  SMSFQGKDVVEVEESMDYLWEDFNGEEEKEKFKVRRRRSSEEIMSFMQVTKMGRARPSSN 153
           SMSFQGKDVVEVEESMDYLWEDFNGEEEKEKFKVRRRRSSEEIMSFMQVTKMGRA PSSN
Sbjct: 61  SMSFQGKDVVEVEESMDYLWEDFNGEEEKEKFKVRRRRSSEEIMSFMQVTKMGRASPSSN 120

Query: 154 SSSGGGTKMLVIGKFLKGLVSFRKSSQLKFSKPRF 189
           SSSGGGTKMLVIGKFLKGLVSFRKSSQLKFSKPRF
Sbjct: 121 SSSGGGTKMLVIGKFLKGLVSFRKSSQLKFSKPRF 155

[Close]

BLAST of Spo27185.1 vs. NCBI nr
Match: gi|387965712|gb|AFK13841.1| (hypothetical protein [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 146.0 bits (367), Expect = 6.700e-32
Identity = 109/205 (53.17%), Postives = 125/205 (60.98%), Query Frame = 1

		  
Query: 1   MNMFSCQKESN--------NIEEFSFPVVSNNNNVNPLSNFMLSSSSASSSSLWRISSRV 60
           MNMFS  KE+N        N EEFSFPV+    N NPLS+FMLSSSSASSSSLWRISSRV
Sbjct: 1   MNMFSYPKETNKTISSSSTNTEEFSFPVI----NSNPLSSFMLSSSSASSSSLWRISSRV 60

Query: 61  YHH-QEDYNCYYEDRKEEDD--------DRMEVRSMCEEITPCWRDDIERSMSFQGKDVV 120
           YHH QEDY  Y ED  +E +        DR EVRSMCEEI P  R +I+RSMSFQ  +  
Sbjct: 61  YHHYQEDY--YDEDGGQEAENEDYDHYYDRREVRSMCEEILPSRRSEIDRSMSFQSNNEF 120

Query: 121 EVEESMDYLWED-FNGEEEKEKFKVRRRRSSEEIMSFMQVTKMGRARPSSNSSSGGGTKM 180
           +VEESMDYLWE+ FN EE K+    R+  S E+ M  M+V KM R               
Sbjct: 121 KVEESMDYLWENHFNQEEIKD----RKSISGEDNMGVMEVAKMDRKS------------- 179

Query: 181 LVIGKFLKGLVSFRKSSQLKFSKPR 188
               K LK LVS RKS+QLK  K +
Sbjct: 181 ---RKLLKRLVSIRKSAQLKAFKTK 179

[Close]

BLAST of Spo27185.1 vs. NCBI nr
Match: gi|870862725|gb|KMT13913.1| (hypothetical protein BVRB_4g077540 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 142.9 bits (359), Expect = 5.700e-31
Identity = 98/164 (59.76%), Postives = 113/164 (68.90%), Query Frame = 1

		  
Query: 34  MLSSSSASSSSLWRISSRVYHH-QEDYNCYYEDRKEEDD--------DRMEVRSMCEEIT 93
           MLSSSSASSSSLWRISSRVYHH QEDY  Y ED  +E +        DR EVRSMC+EI 
Sbjct: 1   MLSSSSASSSSLWRISSRVYHHYQEDY--YDEDGGQEAENEDYDHYYDRREVRSMCDEIL 60

Query: 94  PCWRDDIERSMSFQGKDVVEVEESMDYLWED-FNGEEEKEKFKVRRRRSSEEIMSFMQVT 153
           P  R +I+RSMSFQ  +  +VEESMDYLWE+ FN EE K+    R+  S E+ M  M+V 
Sbjct: 61  PSRRSEIDRSMSFQSNNEFKVEESMDYLWENHFNQEEIKD----RKSISGEDNMGVMEVA 120

Query: 154 KMGRARPSSNSSSGGGTKMLVIGKFLKGLVSFRKSSQLKFSKPR 188
           KM   R SSNS+S   TKMLVIGK LK LVS RKS+QLK  K +
Sbjct: 121 KMD--RKSSNSNSSSSTKMLVIGKLLKRLVSIRKSAQLKAFKTK 156

[Close]

BLAST of Spo27185.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QXT7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_134570 PE=4 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 3.300e-78
Identity = 154/155 (99.35%), Postives = 154/155 (99.35%), Query Frame = 1

		  
Query: 34  MLSSSSASSSSLWRISSRVYHHQEDYNCYYEDRKEEDDDRMEVRSMCEEITPCWRDDIER 93
           MLSSSSASSSSLWRISSRVYHHQEDYNCYYEDRKEEDDDRMEVRSMCEEITPCWRDDIER
Sbjct: 1   MLSSSSASSSSLWRISSRVYHHQEDYNCYYEDRKEEDDDRMEVRSMCEEITPCWRDDIER 60

Query: 94  SMSFQGKDVVEVEESMDYLWEDFNGEEEKEKFKVRRRRSSEEIMSFMQVTKMGRARPSSN 153
           SMSFQGKDVVEVEESMDYLWEDFNGEEEKEKFKVRRRRSSEEIMSFMQVTKMGRA PSSN
Sbjct: 61  SMSFQGKDVVEVEESMDYLWEDFNGEEEKEKFKVRRRRSSEEIMSFMQVTKMGRASPSSN 120

Query: 154 SSSGGGTKMLVIGKFLKGLVSFRKSSQLKFSKPRF 189
           SSSGGGTKMLVIGKFLKGLVSFRKSSQLKFSKPRF
Sbjct: 121 SSSGGGTKMLVIGKFLKGLVSFRKSSQLKFSKPRF 155

[Close]

BLAST of Spo27185.1 vs. UniProtKB/TrEMBL
Match: J3SDF1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 4.700e-32
Identity = 109/205 (53.17%), Postives = 125/205 (60.98%), Query Frame = 1

		  
Query: 1   MNMFSCQKESN--------NIEEFSFPVVSNNNNVNPLSNFMLSSSSASSSSLWRISSRV 60
           MNMFS  KE+N        N EEFSFPV+    N NPLS+FMLSSSSASSSSLWRISSRV
Sbjct: 1   MNMFSYPKETNKTISSSSTNTEEFSFPVI----NSNPLSSFMLSSSSASSSSLWRISSRV 60

Query: 61  YHH-QEDYNCYYEDRKEEDD--------DRMEVRSMCEEITPCWRDDIERSMSFQGKDVV 120
           YHH QEDY  Y ED  +E +        DR EVRSMCEEI P  R +I+RSMSFQ  +  
Sbjct: 61  YHHYQEDY--YDEDGGQEAENEDYDHYYDRREVRSMCEEILPSRRSEIDRSMSFQSNNEF 120

Query: 121 EVEESMDYLWED-FNGEEEKEKFKVRRRRSSEEIMSFMQVTKMGRARPSSNSSSGGGTKM 180
           +VEESMDYLWE+ FN EE K+    R+  S E+ M  M+V KM R               
Sbjct: 121 KVEESMDYLWENHFNQEEIKD----RKSISGEDNMGVMEVAKMDRKS------------- 179

Query: 181 LVIGKFLKGLVSFRKSSQLKFSKPR 188
               K LK LVS RKS+QLK  K +
Sbjct: 181 ---RKLLKRLVSIRKSAQLKAFKTK 179

[Close]

BLAST of Spo27185.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CPF3_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g077540 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 4.000e-31
Identity = 98/164 (59.76%), Postives = 113/164 (68.90%), Query Frame = 1

		  
Query: 34  MLSSSSASSSSLWRISSRVYHH-QEDYNCYYEDRKEEDD--------DRMEVRSMCEEIT 93
           MLSSSSASSSSLWRISSRVYHH QEDY  Y ED  +E +        DR EVRSMC+EI 
Sbjct: 1   MLSSSSASSSSLWRISSRVYHHYQEDY--YDEDGGQEAENEDYDHYYDRREVRSMCDEIL 60

Query: 94  PCWRDDIERSMSFQGKDVVEVEESMDYLWED-FNGEEEKEKFKVRRRRSSEEIMSFMQVT 153
           P  R +I+RSMSFQ  +  +VEESMDYLWE+ FN EE K+    R+  S E+ M  M+V 
Sbjct: 61  PSRRSEIDRSMSFQSNNEFKVEESMDYLWENHFNQEEIKD----RKSISGEDNMGVMEVA 120

Query: 154 KMGRARPSSNSSSGGGTKMLVIGKFLKGLVSFRKSSQLKFSKPR 188
           KM   R SSNS+S   TKMLVIGK LK LVS RKS+QLK  K +
Sbjct: 121 KMD--RKSSNSNSSSSTKMLVIGKLLKRLVSIRKSAQLKAFKTK 156

The following BLAST results are available for this feature:

BLAST of Spo27185.1 vs. NCBI nr
BLAST of Spo27185.1 vs. UniProtKB/TrEMBL
BLAST of Spo27185.1 vs. ExPASy Swiss-Prot
BLAST of Spo27185.1 vs. TAIR (Arabidopsis)

BLAST of Spo27185.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 3

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
gi\|902189965\|gb\|KNA11518.1\|	4.8e-78	99.3	hypothetical protein SOVF_1345...	[more]
gi\|387965712\|gb\|AFK13841.1\|	6.7e-32	53.1	hypothetical protein [Beta vul...	[more]
gi\|870862725\|gb\|KMT13913.1\|	5.7e-31	59.7	hypothetical protein BVRB_4g07...	[more]

BLAST of Spo27185.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 3

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0K9QXT7_SPIOL	3.3e-78	99.3	Uncharacterized protein OS=Spi...	[more]
J3SDF1_BETVU	4.7e-32	53.1	Uncharacterized protein OS=Bet...	[more]
A0A0J8CPF3_BETVU	4.0e-31	59.7	Uncharacterized protein OS=Bet...	[more]

BLAST of Spo27185.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo27185.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description