Spo17549.1 (mRNA) | SpinachBase

Overview


Name	Spo17549.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	SpoScf_04113 : 611 .. 4694 (-)
Sequence length	1373

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTGATGGAAGGAATACTGATTCGATCTCATTTGAGGAGCTTATACCCCTCACTTATTCATGGGAGGACGATACGGAGTTCAAAGATCTCACAGTTGGGGCAATTTCCCCAAGATTTTTGAGTTCTGAGTTTCTAAACTTTGCTGAGAAGTTCAGAAACGCAAACCCACTTGCTTGGCTCGAATCTGGTGATGTTCCTTGTTTGTATCAGCCCCCTCCTGTGAGATCCGAAAACGGTTTCACCACTCCAACAAAGAAGGAAGCAACAAGTGAGAGTCATGGAGATCTCTCATTTTCTCCGTCACAAATGTCACAAGACCCTCGTGCTTGGCTTGAATCTGGTAATGTTCCGTGTCTCTATCACTCTAATTTTCTTGTTCATGATCGTGTTCTTGATCCTAAGCCAATTTCGCCTCTTAATTCTCATGTTGGTGATGAACAAATTGTCCCCGAAACGCCGGAGGAAGTGCCAGTTAGACTAGAGAACACATTTGCTGGGTACAAGAAAACATGGAGGAGACTATTAGAATCTCCTTCAAAATTGAGTGTCAAAAAGCCTAAAATTGGGTGATATCAGTGGTCATCTCCAGGTTTGTTACTGTTTTTCTCTCTCTTTCATTTTCACCTTTAATTTCTCCTATTTGAAATATTTTCTGTTTTGTGGGTTGTTTGTTCATATCTAAAATGTTTTTTCTTGGATGAAATTGGTTGATGAAATTGGTTGATGTTTCTGTTGTTTGCAATTGGTTGATGCAATTGTTTTGTGGGTTGTTGTTTGCAATTGGTTGATGTTTCAGTTGTTTGCAATTGGTTGATGAAAGAGGCTAGTTCTATTTTTACTCACACATGATATGCATAAATATTCATGTAAAACTATTCATGTATTAAATTATGAAACATGTATACTCAAAAAATGCACCAGAACTTTACCTGAAGAGTTGGATGTAAAATTAGCAAGATTGTTGGCTGCTTTTCTTAAGTGGTAGCAGATTAGCAATTTATAGCAGATTAGCAATTTATCTTCTTTCTAACTATTGTCTATCATAGAGGCTTATAGCTTTATTATAAAAAGTAGCTTAAATTTTCTTCTTCCGATCCTCTTCTCGTGTATGCTGAGCTTTCCCCCTGCCCCTATCTCTTGCTAGAAATTTGGGCGTGAAAGCTTTGTACCTAATTTTCAATATTGTGGCTTATTTGGGCATCCTGAATTTCTGAGTTTAAGTTTCCACATAAATATGAGTACAAGGTTTTACAGAAGATTTTATGTTGTTAATGCAATGAAAAAAAGGTCTAAGAATCCCCAAATTCGTAACTCATATAAGTAAAACAAAAGCACCTGACTTTTCTATTATTTAAGGCAAGACTATGATACTTTCCTCTTTCCATTACTATGTATGCTCATGAACATCAGTACCCATATGAAATTATCAAGCCAATACTCATGAATATCAGTAAACAAACTGTTTATGCACACTAATAAATGAATTACATGTGACTGTTTGTTTCATTCTTGTTTGAGTAATAGTAGTGATATTCCTTGCTACCATGATAAGACTAGTTGTGATTCCCGTGAAGTAAATGAATTTCTTGAACATTATTGTTTTCTTGAACATGTGTCTAATAATCAAAGTAGTCATTTTTTATACATCAAAATATTTTCACAAAAAGGTACAACATGTGTCTAGTTAATCCCATCCTAATCTGTACCACATATACAAAAGTTGTTGCCTTACCTAACTTTTACACATCAATACTACATCAATATTACATTAGTTAGTAGAATTAGGCTAAGACACTTCCAAAATAAACTTTATAACATCCCAAAATGTATGCAGTAACTGTTAATTTGCATCTTCCATATCAATGTCATAGTCATATGCCCCTGGTGCTACCACAAAACCCTCATTTAAAAAGTCAACGGCATCATCTATGATATGTTGTTGGATTTGAGTATCGGTAGGCAACAAACGAAGTCTTTCTAGTCTTTTCTTGCCTTGATGTGGACTCTTGTAGTTGTTCCCTCCCTTCTGTTTTAGTATTTCAACCATCACGTATTGTAGTTGTAGCCATGTGTGGTTTAGACTCTTAGGGTCATACTCCATGTAAGCATCGTGCACTGATTGAACCAACTCCGTGACATTTTTTGGGAACTTTTGGTGTTGTAGTGACTGTATGCCCCTAAAGAATCCCAAGTCCAAAACATTCAGATCAGGAGATTGTGCTGGCTGGCAGATTAAGTGAATGTCAAACCCATATTTATTTGCTTCCTCTAGAAATTCAGGATCGTTAGGAAAAATATGTGGCCTTGCATTATCTTGTTGTATCCAAATAGTTTTACATGCATTAGCCGGCCATTTAGCCCTGATTGTTGGTAGCAATTCATCGAGCATTTTCCTTCTAATGACATTCTTGGTTATTGATGGTGTTGCTTTGGTCTCGATGGTGCCCCTTTCTCTATTTTTACTTGTTCTGATGGCTGCAACTTCATCTGTGAATGCCCAAATCCCTATTTTCCCATCCCATATAACCTCTCCACCACTAGCTATTATTGGTCTTGCCACTCCCGATAAGAACATCACCTTTTCTGTGTAGTTCTTGCTTTGAATATGTCGGTAAGGTTCTTCTTCGCCTGCCAGTAGATAATATCGTTGCGTGTTTTTGCTCATAAAGAACCAATTTTCATCAATATGCACAAAATTGCTAAGTGACATGAATGTTGATTGTTGTGTGACTGTTCTTGGAAGGGTGAGACCCAAAATCCATTTCAATCTAGTGATTTTGTGTGCTGCAGAAACTGTTGGCTTGATAGAGTTCGTATGTGATCTGATAATCCCTTTTTTTAACAATTTATACACCATCGAAGGGCTGCATTCTAGTGCTGATGCAAAACTTTGTATGGTGGTTCTTGCTTTTTGACTTATTTGCAGCATGATTTCAGTGTCAAAGTCTCTTGGTTTTCTCCCCACCTTCCCTGTTTTTTTATTCTTCACATCAATCAGATCTGGACCTAGCTTTCCTTGTTCTCTAACATTTTTCCACATCCTACTAACTGTAGACCTGCTTATGTCGAATTCATCTTGTAATTGTTGGCTTACTCCTGTTGGTAATCTCACCCAGTCTCTCGATAATACCAACAACCTTTGTGCCAGATGAGTTCGTCCTTTGTTATCTTGTTCATGTCTTTTTTTAGTTAAGATGGGATTAACATGCAAACCAGTTTCATTTTGTTGATTATCATGCAAATTAGTTTCTGTTTCAGTTTGTTGATTATCATGAATATCATTTTCTTCACTATCACTTTCACTTTCACTTTCATGTTCGCTTAAGTACCATACCTCGTTATCTTCAAAGTCAGCATCATCCTCGTCAACCATAGCAGAAAATTCAAGCGCTTCAAGCTCTTCAGCAGAAATTTCAATAAAAGGATCCCCTGTAGCAACAGCAACAGCAGCAACAGCAGCAACAGCTAACTCTCTCTCTCCCACGGGATGTGCATACTCCATGAAGCTGCTTTCAGCATCGTGGCTTTCCAAATTCAAGTCAAACAAGTGCATGTGTGTGATGTGAGTGAAATTATGAAGTGTAGTAGCAGTGTTTTTTTGTAGTTGTAAATGGTGGGAGTTATTTTGATGGGGCTGTGTTTTTATAAGAGTTTAGGTCAAAAAAGTTCTCCAAAATTTAAATTGTAAAGTTTGCCCCCTTTTTCAAATTTTCATTAAATGTTTGGAGGGAAAACCAATTTTGTTTTCATTTTCCCTCCTTACATTGTACCTTAATTTGTAATTAAGGAGAAGGTCCCCACTTGCCTTTTGGATTACCCCATTTCTTTTGACATTAATTAAAGTACATCACATGGGTTGTTGTACTTTTTTGCACTCTCTCTCCTTTTCTTAATATGTGCGCCTATTTCTATTGTGTCAATTAATTAAGAATGAAGTACCAATTTTATATATTAGATTAGATTAGTTTTTTATTCTGCATTGAATTTTATTTTAGATTTTATTTTTTAATTAGGAGAGTGTTTGTTTTTGGATGAAATTGTATATGTGTAATATTAATAATAATTAATAAAAATATCTACG

mRNA sequence

ATGTTTGATGGAAGGAATACTGATTCGATCTCATTTGAGGAGCTTATACCCCTCACTTATTCATGGGAGGACGATACGGAGTTCAAAGATCTCACAGTTGGGGCAATTTCCCCAAGATTTTTGAGTTCTGAGTTTCTAAACTTTGCTGAGAAGTTCAGAAACGCAAACCCACTTGCTTGGCTCGAATCTGGTGATGTTCCTTGTTTGTATCAGCCCCCTCCTGTGAGATCCGAAAACGGTTTCACCACTCCAACAAAGAAGGAAGCAACAAGTGAGAGTCATGGAGATCTCTCATTTTCTCCGTCACAAATGTCACAAGACCCTCGTGCTTGGCTTGAATCTGGTAATGTTCCGTGTCTCTATCACTCTAATTTTCTTGTTCATGATCGTGTTCTTGATCCTAAGCCAATTTCGCCTCTTAATTCTCATGTTGGTGATGAACAAATTGTCCCCGAAACGCCGGAGGAAGTGCCAGTTAGACTAGAGAACACATTTGCTGGGTACAAGAAAACATGGAGGAGACTATTAGAATCTCCTTCAAAATTGAGTGTCAAAAAGCCTAAAATTGGTAGTGATATTCCTTGCTACCATGATAAGACTAGTTGTGATTCCCGTGAATACCATACCTCGTTATCTTCAAAGTCAGCATCATCCTCGTCAACCATAGCAGAAAATTCAAGCGCTTCAAGCTCTTCAGCAGAAATTTCAATAAAAGGATCCCCTGTAGCAACAGCAACAGCAGCAACAGCAGCAACAGCTAACTCTCTCTCTCCCACGGGATGTGCATACTCCATGAAGCTGCTTTCAGCATCGTGGCTTTCCAAATTCAAGTCAAACAAGTGCATGTGTGTGATGTGAGTGAAATTATGAAGTGTAGTAGCAGTGTTTTTTTGTAGTTGTAAATGGTGGGAGTTATTTTGATGGGGCTGTGTTTTTATAAGAGTTTAGGTCAAAAAAGTTCTCCAAAATTTAAATTGTAAAGTTTGCCCCCTTTTTCAAATTTTCATTAAATGTTTGGAGGGAAAACCAATTTTGTTTTCATTTTCCCTCCTTACATTGTACCTTAATTTGTAATTAAGGAGAAGGTCCCCACTTGCCTTTTGGATTACCCCATTTCTTTTGACATTAATTAAAGTACATCACATGGGTTGTTGTACTTTTTTGCACTCTCTCTCCTTTTCTTAATATGTGCGCCTATTTCTATTGTGTCAATTAATTAAGAATGAAGTACCAATTTTATATATTAGATTAGATTAGTTTTTTATTCTGCATTGAATTTTATTTTAGATTTTATTTTTTAATTAGGAGAGTGTTTGTTTTTGGATGAAATTGTATATGTGTAATATTAATAATAATTAATAAAAATATCTACG

Coding sequence (CDS)

ATGTTTGATGGAAGGAATACTGATTCGATCTCATTTGAGGAGCTTATACCCCTCACTTATTCATGGGAGGACGATACGGAGTTCAAAGATCTCACAGTTGGGGCAATTTCCCCAAGATTTTTGAGTTCTGAGTTTCTAAACTTTGCTGAGAAGTTCAGAAACGCAAACCCACTTGCTTGGCTCGAATCTGGTGATGTTCCTTGTTTGTATCAGCCCCCTCCTGTGAGATCCGAAAACGGTTTCACCACTCCAACAAAGAAGGAAGCAACAAGTGAGAGTCATGGAGATCTCTCATTTTCTCCGTCACAAATGTCACAAGACCCTCGTGCTTGGCTTGAATCTGGTAATGTTCCGTGTCTCTATCACTCTAATTTTCTTGTTCATGATCGTGTTCTTGATCCTAAGCCAATTTCGCCTCTTAATTCTCATGTTGGTGATGAACAAATTGTCCCCGAAACGCCGGAGGAAGTGCCAGTTAGACTAGAGAACACATTTGCTGGGTACAAGAAAACATGGAGGAGACTATTAGAATCTCCTTCAAAATTGAGTGTCAAAAAGCCTAAAATTGGTAGTGATATTCCTTGCTACCATGATAAGACTAGTTGTGATTCCCGTGAATACCATACCTCGTTATCTTCAAAGTCAGCATCATCCTCGTCAACCATAGCAGAAAATTCAAGCGCTTCAAGCTCTTCAGCAGAAATTTCAATAAAAGGATCCCCTGTAGCAACAGCAACAGCAGCAACAGCAGCAACAGCTAACTCTCTCTCTCCCACGGGATGTGCATACTCCATGAAGCTGCTTTCAGCATCGTGGCTTTCCAAATTCAAGTCAAACAAGTGCATGTGTGTGATGTGA

Protein sequence

MFDGRNTDSISFEELIPLTYSWEDDTEFKDLTVGAISPRFLSSEFLNFAEKFRNANPLAWLESGDVPCLYQPPPVRSENGFTTPTKKEATSESHGDLSFSPSQMSQDPRAWLESGNVPCLYHSNFLVHDRVLDPKPISPLNSHVGDEQIVPETPEEVPVRLENTFAGYKKTWRRLLESPSKLSVKKPKIGSDIPCYHDKTSCDSREYHTSLSSKSASSSSTIAENSSASSSSAEISIKGSPVATATAATAATANSLSPTGCAYSMKLLSASWLSKFKSNKCMCVM

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo17549	Spo17549	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo17549.1	Spo17549.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo17549.1.CDS.3	Spo17549.1.CDS.3	CDS
Spo17549.1.CDS.2	Spo17549.1.CDS.2	CDS
Spo17549.1.CDS.1	Spo17549.1.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo17549.1.utr3p.1	Spo17549.1.utr3p.1	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo17549.1.exon.3	Spo17549.1.exon.3	exon
Spo17549.1.exon.2	Spo17549.1.exon.2	exon
Spo17549.1.exon.1	Spo17549.1.exon.1	exon

Homology

[Close]

BLAST of Spo17549.1 vs. NCBI nr
Match: gi|902212532|gb|KNA17008.1| (hypothetical protein SOVF_084050 [Spinacia oleracea])

HSP 1 Score: 380.2 bits (975), Expect = 3.200e-102
Identity = 183/185 (98.92%), Postives = 183/185 (98.92%), Query Frame = 1

		  
Query: 1   MFDGRNTDSISFEELIPLTYSWEDDTEFKDLTVGAISPRFLSSEFLNFAEKFRNANPLAW 60
           MFDGRNTDSISFEELIPLTYSWEDDTEFKDLTVGAISPRFLSSEFLNFAEKFRNANPLAW
Sbjct: 1   MFDGRNTDSISFEELIPLTYSWEDDTEFKDLTVGAISPRFLSSEFLNFAEKFRNANPLAW 60

Query: 61  LESGDVPCLYQPPPVRSENGFTTPTKKEATSESHGDLSFSPSQMSQDPRAWLESGNVPCL 120
           LESGDVPCLYQPPPVRSENGFTTPTKKEATSESHGDLSFSPSQMSQDPRAWLESGNVPCL
Sbjct: 61  LESGDVPCLYQPPPVRSENGFTTPTKKEATSESHGDLSFSPSQMSQDPRAWLESGNVPCL 120

Query: 121 YHSNFLVHDRVLDPKPISPLNSHVGDEQIVPETPEEVPVRLENTFAGYKKTWRRLLESPS 180
           YHSNFLVHDRVLDPKPISPLNSHVGDEQIVPETPEEVPVRLENTFAGYKKT RRLLESP 
Sbjct: 121 YHSNFLVHDRVLDPKPISPLNSHVGDEQIVPETPEEVPVRLENTFAGYKKTRRRLLESPL 180

Query: 181 KLSVK 186
           KLSVK
Sbjct: 181 KLSVK 185

[Close]

BLAST of Spo17549.1 vs. NCBI nr
Match: gi|902184794|gb|KNA10371.1| (hypothetical protein SOVF_144980 [Spinacia oleracea])

HSP 1 Score: 167.5 bits (423), Expect = 3.300e-38
Identity = 79/87 (90.80%), Postives = 81/87 (93.10%), Query Frame = 1

		  
Query: 104 MSQDPRAWLESGNVPCLYHSNFLVHDRVLDPKPISPLNSHVGDEQIVPETPEEVPVRLEN 163
           MSQDPRAWLESGNVPCLYHSNFLVHD VLDPKPI PL+SHVGDEQIVPETPEE+PVRLEN
Sbjct: 1   MSQDPRAWLESGNVPCLYHSNFLVHDGVLDPKPILPLDSHVGDEQIVPETPEEMPVRLEN 60

Query: 164 TFAGYKKTWRRLLESPSKLSVKKPKIG 191
           TF GYKKT RRLLESPSK  VKKPKIG
Sbjct: 61  TFVGYKKTRRRLLESPSKSGVKKPKIG 87

[Close]

BLAST of Spo17549.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RBY0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_084050 PE=4 SV=1)

HSP 1 Score: 380.2 bits (975), Expect = 2.200e-102
Identity = 183/185 (98.92%), Postives = 183/185 (98.92%), Query Frame = 1

		  
Query: 1   MFDGRNTDSISFEELIPLTYSWEDDTEFKDLTVGAISPRFLSSEFLNFAEKFRNANPLAW 60
           MFDGRNTDSISFEELIPLTYSWEDDTEFKDLTVGAISPRFLSSEFLNFAEKFRNANPLAW
Sbjct: 1   MFDGRNTDSISFEELIPLTYSWEDDTEFKDLTVGAISPRFLSSEFLNFAEKFRNANPLAW 60

Query: 61  LESGDVPCLYQPPPVRSENGFTTPTKKEATSESHGDLSFSPSQMSQDPRAWLESGNVPCL 120
           LESGDVPCLYQPPPVRSENGFTTPTKKEATSESHGDLSFSPSQMSQDPRAWLESGNVPCL
Sbjct: 61  LESGDVPCLYQPPPVRSENGFTTPTKKEATSESHGDLSFSPSQMSQDPRAWLESGNVPCL 120

Query: 121 YHSNFLVHDRVLDPKPISPLNSHVGDEQIVPETPEEVPVRLENTFAGYKKTWRRLLESPS 180
           YHSNFLVHDRVLDPKPISPLNSHVGDEQIVPETPEEVPVRLENTFAGYKKT RRLLESP 
Sbjct: 121 YHSNFLVHDRVLDPKPISPLNSHVGDEQIVPETPEEVPVRLENTFAGYKKTRRRLLESPL 180

Query: 181 KLSVK 186
           KLSVK
Sbjct: 181 KLSVK 185

[Close]

BLAST of Spo17549.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QV16_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_144980 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 2.300e-38
Identity = 79/87 (90.80%), Postives = 81/87 (93.10%), Query Frame = 1

		  
Query: 104 MSQDPRAWLESGNVPCLYHSNFLVHDRVLDPKPISPLNSHVGDEQIVPETPEEVPVRLEN 163
           MSQDPRAWLESGNVPCLYHSNFLVHD VLDPKPI PL+SHVGDEQIVPETPEE+PVRLEN
Sbjct: 1   MSQDPRAWLESGNVPCLYHSNFLVHDGVLDPKPILPLDSHVGDEQIVPETPEEMPVRLEN 60

Query: 164 TFAGYKKTWRRLLESPSKLSVKKPKIG 191
           TF GYKKT RRLLESPSK  VKKPKIG
Sbjct: 61  TFVGYKKTRRRLLESPSKSGVKKPKIG 87

The following BLAST results are available for this feature:

BLAST of Spo17549.1 vs. NCBI nr
BLAST of Spo17549.1 vs. UniProtKB/TrEMBL
BLAST of Spo17549.1 vs. ExPASy Swiss-Prot
BLAST of Spo17549.1 vs. TAIR (Arabidopsis)

BLAST of Spo17549.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 2

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
gi\|902212532\|gb\|KNA17008.1\|	3.2e-102	98.9	hypothetical protein SOVF_0840...	[more]
gi\|902184794\|gb\|KNA10371.1\|	3.3e-38	90.8	hypothetical protein SOVF_1449...	[more]

BLAST of Spo17549.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 2

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0K9RBY0_SPIOL	2.2e-102	98.9	Uncharacterized protein OS=Spi...	[more]
A0A0K9QV16_SPIOL	2.3e-38	90.8	Uncharacterized protein OS=Spi...	[more]

BLAST of Spo17549.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo17549.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description