Homology
BLAST of Spo22572.1 vs. NCBI nr
Match:
gi|223536811|gb|EEF38450.1| (DNA-directed RNA polymerase beta chain, putative [Ricinus communis])
HSP 1 Score: 464.9 bits (1195), Expect = 1.200e-127
Identity = 242/287 (84.32%), Postives = 251/287 (87.46%), Query Frame = 1
Query: 1 MNLEKRIDSWNERITRILGSPWGFMIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIE 60 +NLEKR+ WNE I RILG PWGF+IG ELTI QSRISLVNKIQ+VYRSQGVQIHNRHIE Sbjct: 85 INLEKRVGGWNECIPRILGIPWGFLIGTELTIVQSRISLVNKIQRVYRSQGVQIHNRHIE 144 Query: 61 IIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLLGITRASLNTQ 120 IIVRQITSKVLVSEDGMSNVF PGELIGL RAERTGRALEEAICYRA LLGITRASLNTQ Sbjct: 145 IIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAILLGITRASLNTQ 204 Query: 121 SFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFVHHSKACDLVF 180 SFISEASFQETARVLAKAALRGRIDWLKGLKE VVLGGMIPVGTGFKG V Sbjct: 205 SFISEASFQETARVLAKAALRGRIDWLKGLKEKVVLGGMIPVGTGFKGLVQ--------- 264 Query: 181 DASSRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLR 240 +SR KQFLIVGTKNKAAD VARAAIRARCHYVNKKWLG +LTNWSTTE RL F+DLR Sbjct: 265 --ASRRKQFLIVGTKNKAADLVARAAIRARCHYVNKKWLGSILTNWSTTENRLQNFKDLR 324 Query: 241 MEQTAGRLARLPKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVD 288 MEQ RL RLPK DAA +KRQL+HLQTYLGGIKYMTGLPDIVIIVD Sbjct: 325 MEQKTCRLNRLPKGDAARLKRQLAHLQTYLGGIKYMTGLPDIVIIVD 360
BLAST of Spo22572.1 vs. NCBI nr
Match:
gi|223546420|gb|EEF47920.1| (30S ribosomal protein S2, putative [Ricinus communis])
HSP 1 Score: 437.6 bits (1124), Expect = 2.100e-119
Identity = 238/317 (75.08%), Postives = 250/317 (78.86%), Query Frame = 1
Query: 77 MSNVFLPGELIGLFRAERTGRALEEAICYRATLLGITRASLNTQSFISEASFQETARVLA 136 MSNVF PGELIGL RA+RTGRALEEAI YRA LLGI RASLNTQSFISEASFQET RVLA Sbjct: 1 MSNVFSPGELIGLLRAKRTGRALEEAIYYRAILLGIMRASLNTQSFISEASFQETTRVLA 60 Query: 137 KAALRGRIDWLKGLKENVVLGGMIPV---------------------------------G 196 KAALRGRI+WLKGLKENVVLGGMIP+ Sbjct: 61 KAALRGRINWLKGLKENVVLGGMIPIGSGFKGLVQEMMKAGVHFGHGTRKWNPRMAPYIS 120 Query: 197 TGFKGF--------VHH-SKACDLVFDASSRGKQFLIVGTKNKAADSVARAAIRARCHYV 256 T KG H S+ACDLVFDA+SR KQFLIVGTKNKAADSVARAAIRARCHYV Sbjct: 121 TKRKGIHITNLTRTAHFLSEACDLVFDAASRRKQFLIVGTKNKAADSVARAAIRARCHYV 180 Query: 257 NKKWLGGMLTNWSTTETRLHKFRDLRMEQTAGRLARLPKRDAAVVKRQLSHLQTYLGGIK 316 NKKWLGG+LTNWSTTETR+ KFRDLRMEQ GRL RLPK DAA ++RQL+HLQTYLG IK Sbjct: 181 NKKWLGGILTNWSTTETRIQKFRDLRMEQKTGRLNRLPKGDAARLERQLAHLQTYLGRIK 240 Query: 317 YMTGLPDIVIIVDQQEEYTALRECITLGIPTICLIDTNCNPDLADISIPANDDAIASIRL 352 YM GLPDIVIIVDQQE+YT LRECITLGIPTICLIDTNC+ DLADISIPANDDAIASIRL Sbjct: 241 YMMGLPDIVIIVDQQEDYTTLRECITLGIPTICLIDTNCDLDLADISIPANDDAIASIRL 300
BLAST of Spo22572.1 vs. NCBI nr
Match:
gi|223525048|gb|EEF27828.1| (DNA-directed RNA polymerase beta chain, putative [Ricinus communis])
HSP 1 Score: 412.5 bits (1059), Expect = 7.300e-112
Identity = 225/299 (75.25%), Postives = 236/299 (78.93%), Query Frame = 1
Query: 1 MNLEKRIDSWNERITRILGSPWGFMIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIE 60 +NLEKR+ WNE I RILG PWGF+IG ELTI QSRISLVNKIQ+VYRSQGVQIHNRHIE Sbjct: 85 INLEKRVGGWNECIPRILGIPWGFLIGIELTIVQSRISLVNKIQRVYRSQGVQIHNRHIE 144 Query: 61 IIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLLGITRASLNTQ 120 IIVRQITSKVLVSEDGMSNVF PGELI L +AERTGRALEEAICYRA LLGITRASLNTQ Sbjct: 145 IIVRQITSKVLVSEDGMSNVFSPGELIRLLQAERTGRALEEAICYRAILLGITRASLNTQ 204 Query: 121 SFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPV------------------ 180 SFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPV Sbjct: 205 SFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGLVQEMMKAGVHF 264 Query: 181 GTGFKGF--------------VHH----------SKACDLVFDASSRGKQFLIVGTKNKA 240 G G + + +H S+ACDLVFDA+SR KQFLIVGTKNKA Sbjct: 265 GHGTRKWNPRMAPYISAKRKGIHITNLTRTARFLSEACDLVFDAASRRKQFLIVGTKNKA 324 Query: 241 ADSVARAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRMEQTAGRLARLPKRDAA 258 ADSVARAAIRARCHYVNKKWLGG+LTNWSTTETRL KFRDLRMEQ GRL RLPK DAA Sbjct: 325 ADSVARAAIRARCHYVNKKWLGGILTNWSTTETRLQKFRDLRMEQKTGRLNRLPKGDAA 383
BLAST of Spo22572.1 vs. NCBI nr
Match:
gi|11497513|ref|NP_054921.1| (ribosomal protein S2 [Spinacia oleracea])
HSP 1 Score: 365.2 bits (936), Expect = 1.300e-97
Identity = 181/182 (99.45%), Postives = 182/182 (100.00%), Query Frame = 1
Query: 173 SKACDLVFDASSRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETR 232 S+ACDLVFDASSRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETR Sbjct: 55 SEACDLVFDASSRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETR 114 Query: 233 LHKFRDLRMEQTAGRLARLPKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEY 292 LHKFRDLRMEQTAGRLARLPKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEY Sbjct: 115 LHKFRDLRMEQTAGRLARLPKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEY 174 Query: 293 TALRECITLGIPTICLIDTNCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIR 352 TALRECITLGIPTICLIDTNCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIR Sbjct: 175 TALRECITLGIPTICLIDTNCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIR 234 Query: 353 NP 355 NP Sbjct: 235 NP 236
BLAST of Spo22572.1 vs. NCBI nr
Match:
gi|188036203|pdb|3BBN|B (Chain B, Homology Model For The Spinach Chloroplast 30s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome)
HSP 1 Score: 362.1 bits (928), Expect = 1.100e-96
Identity = 180/181 (99.45%), Postives = 181/181 (100.00%), Query Frame = 1
Query: 173 SKACDLVFDASSRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETR 232 S+ACDLVFDASSRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETR Sbjct: 51 SEACDLVFDASSRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETR 110 Query: 233 LHKFRDLRMEQTAGRLARLPKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEY 292 LHKFRDLRMEQTAGRLARLPKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEY Sbjct: 111 LHKFRDLRMEQTAGRLARLPKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEY 170 Query: 293 TALRECITLGIPTICLIDTNCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIR 352 TALRECITLGIPTICLIDTNCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIR Sbjct: 171 TALRECITLGIPTICLIDTNCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIR 230 Query: 353 N 354 N Sbjct: 231 N 231
BLAST of Spo22572.1 vs. UniProtKB/TrEMBL
Match:
B9SD12_RICCO (DNA-directed RNA polymerase beta chain, putative OS=Ricinus communis GN=RCOM_1067230 PE=4 SV=1)
HSP 1 Score: 464.9 bits (1195), Expect = 8.600e-128
Identity = 242/287 (84.32%), Postives = 251/287 (87.46%), Query Frame = 1
Query: 1 MNLEKRIDSWNERITRILGSPWGFMIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIE 60 +NLEKR+ WNE I RILG PWGF+IG ELTI QSRISLVNKIQ+VYRSQGVQIHNRHIE Sbjct: 85 INLEKRVGGWNECIPRILGIPWGFLIGTELTIVQSRISLVNKIQRVYRSQGVQIHNRHIE 144 Query: 61 IIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLLGITRASLNTQ 120 IIVRQITSKVLVSEDGMSNVF PGELIGL RAERTGRALEEAICYRA LLGITRASLNTQ Sbjct: 145 IIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAILLGITRASLNTQ 204 Query: 121 SFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFVHHSKACDLVF 180 SFISEASFQETARVLAKAALRGRIDWLKGLKE VVLGGMIPVGTGFKG V Sbjct: 205 SFISEASFQETARVLAKAALRGRIDWLKGLKEKVVLGGMIPVGTGFKGLVQ--------- 264 Query: 181 DASSRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLR 240 +SR KQFLIVGTKNKAAD VARAAIRARCHYVNKKWLG +LTNWSTTE RL F+DLR Sbjct: 265 --ASRRKQFLIVGTKNKAADLVARAAIRARCHYVNKKWLGSILTNWSTTENRLQNFKDLR 324 Query: 241 MEQTAGRLARLPKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVD 288 MEQ RL RLPK DAA +KRQL+HLQTYLGGIKYMTGLPDIVIIVD Sbjct: 325 MEQKTCRLNRLPKGDAARLKRQLAHLQTYLGGIKYMTGLPDIVIIVD 360
BLAST of Spo22572.1 vs. UniProtKB/TrEMBL
Match:
B9RL05_RICCO (30S ribosomal protein S2, putative OS=Ricinus communis GN=RCOM_0940830 PE=3 SV=1)
HSP 1 Score: 437.6 bits (1124), Expect = 1.500e-119
Identity = 238/317 (75.08%), Postives = 250/317 (78.86%), Query Frame = 1
Query: 77 MSNVFLPGELIGLFRAERTGRALEEAICYRATLLGITRASLNTQSFISEASFQETARVLA 136 MSNVF PGELIGL RA+RTGRALEEAI YRA LLGI RASLNTQSFISEASFQET RVLA Sbjct: 1 MSNVFSPGELIGLLRAKRTGRALEEAIYYRAILLGIMRASLNTQSFISEASFQETTRVLA 60 Query: 137 KAALRGRIDWLKGLKENVVLGGMIPV---------------------------------G 196 KAALRGRI+WLKGLKENVVLGGMIP+ Sbjct: 61 KAALRGRINWLKGLKENVVLGGMIPIGSGFKGLVQEMMKAGVHFGHGTRKWNPRMAPYIS 120 Query: 197 TGFKGF--------VHH-SKACDLVFDASSRGKQFLIVGTKNKAADSVARAAIRARCHYV 256 T KG H S+ACDLVFDA+SR KQFLIVGTKNKAADSVARAAIRARCHYV Sbjct: 121 TKRKGIHITNLTRTAHFLSEACDLVFDAASRRKQFLIVGTKNKAADSVARAAIRARCHYV 180 Query: 257 NKKWLGGMLTNWSTTETRLHKFRDLRMEQTAGRLARLPKRDAAVVKRQLSHLQTYLGGIK 316 NKKWLGG+LTNWSTTETR+ KFRDLRMEQ GRL RLPK DAA ++RQL+HLQTYLG IK Sbjct: 181 NKKWLGGILTNWSTTETRIQKFRDLRMEQKTGRLNRLPKGDAARLERQLAHLQTYLGRIK 240 Query: 317 YMTGLPDIVIIVDQQEEYTALRECITLGIPTICLIDTNCNPDLADISIPANDDAIASIRL 352 YM GLPDIVIIVDQQE+YT LRECITLGIPTICLIDTNC+ DLADISIPANDDAIASIRL Sbjct: 241 YMMGLPDIVIIVDQQEDYTTLRECITLGIPTICLIDTNCDLDLADISIPANDDAIASIRL 300
BLAST of Spo22572.1 vs. UniProtKB/TrEMBL
Match:
B9T8I6_RICCO (DNA-directed RNA polymerase beta chain, putative OS=Ricinus communis GN=RCOM_0397000 PE=3 SV=1)
HSP 1 Score: 412.5 bits (1059), Expect = 5.100e-112
Identity = 225/299 (75.25%), Postives = 236/299 (78.93%), Query Frame = 1
Query: 1 MNLEKRIDSWNERITRILGSPWGFMIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIE 60 +NLEKR+ WNE I RILG PWGF+IG ELTI QSRISLVNKIQ+VYRSQGVQIHNRHIE Sbjct: 85 INLEKRVGGWNECIPRILGIPWGFLIGIELTIVQSRISLVNKIQRVYRSQGVQIHNRHIE 144 Query: 61 IIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLLGITRASLNTQ 120 IIVRQITSKVLVSEDGMSNVF PGELI L +AERTGRALEEAICYRA LLGITRASLNTQ Sbjct: 145 IIVRQITSKVLVSEDGMSNVFSPGELIRLLQAERTGRALEEAICYRAILLGITRASLNTQ 204 Query: 121 SFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPV------------------ 180 SFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPV Sbjct: 205 SFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGLVQEMMKAGVHF 264 Query: 181 GTGFKGF--------------VHH----------SKACDLVFDASSRGKQFLIVGTKNKA 240 G G + + +H S+ACDLVFDA+SR KQFLIVGTKNKA Sbjct: 265 GHGTRKWNPRMAPYISAKRKGIHITNLTRTARFLSEACDLVFDAASRRKQFLIVGTKNKA 324 Query: 241 ADSVARAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRMEQTAGRLARLPKRDAA 258 ADSVARAAIRARCHYVNKKWLGG+LTNWSTTETRL KFRDLRMEQ GRL RLPK DAA Sbjct: 325 ADSVARAAIRARCHYVNKKWLGGILTNWSTTETRLQKFRDLRMEQKTGRLNRLPKGDAA 383
BLAST of Spo22572.1 vs. UniProtKB/TrEMBL
Match:
A0A023ZQR1_BETVU (Ribosomal protein S2 OS=Beta vulgaris subsp. vulgaris GN=rps2 PE=3 SV=1)
HSP 1 Score: 359.8 bits (922), Expect = 3.900e-96
Identity = 178/182 (97.80%), Postives = 181/182 (99.45%), Query Frame = 1
Query: 173 SKACDLVFDASSRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETR 232 S+ACDLVFDASSRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETR Sbjct: 55 SEACDLVFDASSRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETR 114 Query: 233 LHKFRDLRMEQTAGRLARLPKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEY 292 LHKFRDLRMEQ AGRLARLPKRDAAV+KRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEY Sbjct: 115 LHKFRDLRMEQKAGRLARLPKRDAAVLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEY 174 Query: 293 TALRECITLGIPTICLIDTNCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIR 352 TALRECITLGIPTICLIDTNC+PDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIR Sbjct: 175 TALRECITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIR 234 Query: 353 NP 355 NP Sbjct: 235 NP 236
BLAST of Spo22572.1 vs. UniProtKB/TrEMBL
Match:
A0A165XMG5_9CARY (Ribosomal Protein S2 OS=Bienertia sinuspersici GN=rps2 PE=4 SV=1)
HSP 1 Score: 358.2 bits (918), Expect = 1.100e-95
Identity = 177/182 (97.25%), Postives = 180/182 (98.90%), Query Frame = 1
Query: 173 SKACDLVFDASSRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETR 232 S+ACDLVFDASSRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETR Sbjct: 55 SEACDLVFDASSRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETR 114 Query: 233 LHKFRDLRMEQTAGRLARLPKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEY 292 LHKFRDLRMEQ AGRL RLPKRDAAV+KRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEY Sbjct: 115 LHKFRDLRMEQKAGRLTRLPKRDAAVLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEY 174 Query: 293 TALRECITLGIPTICLIDTNCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIR 352 TALRECITLGIPTICLIDTNC+PDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIR Sbjct: 175 TALRECITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIR 234 Query: 353 NP 355 NP Sbjct: 235 NP 236
BLAST of Spo22572.1 vs. ExPASy Swiss-Prot
Match:
RR2_SPIOL (30S ribosomal protein S2, chloroplastic OS=Spinacia oleracea GN=rps2 PE=1 SV=1)
HSP 1 Score: 365.2 bits (936), Expect = 8.300e-100
Identity = 181/182 (99.45%), Postives = 182/182 (100.00%), Query Frame = 1
Query: 173 SKACDLVFDASSRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETR 232 S+ACDLVFDASSRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETR Sbjct: 55 SEACDLVFDASSRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETR 114 Query: 233 LHKFRDLRMEQTAGRLARLPKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEY 292 LHKFRDLRMEQTAGRLARLPKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEY Sbjct: 115 LHKFRDLRMEQTAGRLARLPKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEY 174 Query: 293 TALRECITLGIPTICLIDTNCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIR 352 TALRECITLGIPTICLIDTNCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIR Sbjct: 175 TALRECITLGIPTICLIDTNCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIR 234 Query: 353 NP 355 NP Sbjct: 235 NP 236
BLAST of Spo22572.1 vs. ExPASy Swiss-Prot
Match:
RR2_EUCGG (30S ribosomal protein S2, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=rps2 PE=3 SV=1)
HSP 1 Score: 350.9 bits (899), Expect = 1.600e-95
Identity = 173/182 (95.05%), Postives = 178/182 (97.80%), Query Frame = 1
Query: 173 SKACDLVFDASSRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETR 232 S+ACDLVFDA+SRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETR Sbjct: 55 SEACDLVFDAASRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETR 114 Query: 233 LHKFRDLRMEQTAGRLARLPKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEY 292 LHKFRDLR EQ AGRL RLPKRDAA++KRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEY Sbjct: 115 LHKFRDLRTEQKAGRLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEY 174 Query: 293 TALRECITLGIPTICLIDTNCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIR 352 TALRECITLGIPTICLIDTNC+PDLADISIPANDDAIASIRLIL KLVFAICEGRSSYIR Sbjct: 175 TALRECITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAICEGRSSYIR 234 Query: 353 NP 355 NP Sbjct: 235 NP 236
BLAST of Spo22572.1 vs. ExPASy Swiss-Prot
Match:
RR2_VITVI (30S ribosomal protein S2, chloroplastic OS=Vitis vinifera GN=rps2 PE=3 SV=1)
HSP 1 Score: 345.9 bits (886), Expect = 5.200e-94
Identity = 170/182 (93.41%), Postives = 176/182 (96.70%), Query Frame = 1
Query: 173 SKACDLVFDASSRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETR 232 S+ACDLVFDA+SRGKQFLIVGTKNKAADSVARAAI+ARCHYVNKKWLGGM TNWSTTETR Sbjct: 55 SEACDLVFDAASRGKQFLIVGTKNKAADSVARAAIKARCHYVNKKWLGGMSTNWSTTETR 114 Query: 233 LHKFRDLRMEQTAGRLARLPKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEY 292 LHKFRDLR EQ GRL RLPKRDAA++KRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEY Sbjct: 115 LHKFRDLRTEQKTGRLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEY 174 Query: 293 TALRECITLGIPTICLIDTNCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIR 352 TALRECITLGIPTICLIDTNC+PDLADISIPANDDAIASIRLIL KLVFAICEGRSSYIR Sbjct: 175 TALRECITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAICEGRSSYIR 234 Query: 353 NP 355 NP Sbjct: 235 NP 236
BLAST of Spo22572.1 vs. ExPASy Swiss-Prot
Match:
RR2_COFAR (30S ribosomal protein S2, chloroplastic OS=Coffea arabica GN=rps2 PE=3 SV=1)
HSP 1 Score: 341.7 bits (875), Expect = 9.900e-93
Identity = 168/182 (92.31%), Postives = 174/182 (95.60%), Query Frame = 1
Query: 173 SKACDLVFDASSRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETR 232 S+ACDLVFDA SRGKQFLIVGTKNKAADSVA AAIRARCHYVNKKWLGGMLTNWSTTETR Sbjct: 55 SEACDLVFDAGSRGKQFLIVGTKNKAADSVAWAAIRARCHYVNKKWLGGMLTNWSTTETR 114 Query: 233 LHKFRDLRMEQTAGRLARLPKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEY 292 LHKFRDLRMEQ GRL RLPKRDAA++KRQLS LQTYLGGIKYMTGLPDIVII+DQ EEY Sbjct: 115 LHKFRDLRMEQKTGRLNRLPKRDAAMLKRQLSRLQTYLGGIKYMTGLPDIVIIIDQHEEY 174 Query: 293 TALRECITLGIPTICLIDTNCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIR 352 TALRECITLGIPTICLIDTNC+PDLADISIPANDDAI+SIRLIL KLVFAICEGRSSYIR Sbjct: 175 TALRECITLGIPTICLIDTNCDPDLADISIPANDDAISSIRLILNKLVFAICEGRSSYIR 234 Query: 353 NP 355 NP Sbjct: 235 NP 236
BLAST of Spo22572.1 vs. ExPASy Swiss-Prot
Match:
RR2_CARPA (30S ribosomal protein S2, chloroplastic OS=Carica papaya GN=rps2 PE=3 SV=1)
HSP 1 Score: 339.7 bits (870), Expect = 3.800e-92
Identity = 168/181 (92.82%), Postives = 174/181 (96.13%), Query Frame = 1
Query: 173 SKACDLVFDASSRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETR 232 S+ACDLVFDA+SRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETR Sbjct: 55 SEACDLVFDAASRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETR 114 Query: 233 LHKFRDLRMEQTAGRLARLPKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEY 292 LHKFRDLR EQ GRL RLPKRDAAV+KRQLSHLQTYLGGIKYMTGLPDIVII+DQQEEY Sbjct: 115 LHKFRDLRTEQKTGRLNRLPKRDAAVLKRQLSHLQTYLGGIKYMTGLPDIVIIIDQQEEY 174 Query: 293 TALRECITLGIPTICLIDTNCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIR 352 TALRECITLGIPTI LIDTNC+PDLADISIPANDDAIASIRLIL KLVFAICEG SSYI+ Sbjct: 175 TALRECITLGIPTISLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAICEGHSSYIQ 234 Query: 353 N 354 N Sbjct: 235 N 235
BLAST of Spo22572.1 vs. TAIR (Arabidopsis)
Match:
ATCG00160.1 (ribosomal protein S2)
HSP 1 Score: 323.9 bits (829), Expect = 1.200e-88
Identity = 161/181 (88.95%), Postives = 168/181 (92.82%), Query Frame = 1
Query: 173 SKACDLVFDASSRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETR 232 S+ACDLVFDA+SRGKQFLIVGTKNKAAD V+RAAIRARCHYVNKKWLGGMLTNWSTTE R Sbjct: 55 SEACDLVFDAASRGKQFLIVGTKNKAADLVSRAAIRARCHYVNKKWLGGMLTNWSTTEKR 114 Query: 233 LHKFRDLRMEQTAGRLARLPKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEY 292 LHKFRDLR EQ RLPKRDAAV+KRQLS L+TYLGGIKYMTGLPDIVII+DQQEEY Sbjct: 115 LHKFRDLRTEQKTEGFNRLPKRDAAVLKRQLSRLETYLGGIKYMTGLPDIVIILDQQEEY 174 Query: 293 TALRECITLGIPTICLIDTNCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIR 352 TALRECITLGIPTI LIDTNCNPDLADISIPANDDAIASIR IL KLVFAICEGRSSYI+ Sbjct: 175 TALRECITLGIPTISLIDTNCNPDLADISIPANDDAIASIRFILNKLVFAICEGRSSYIQ 234 Query: 353 N 354 N Sbjct: 235 N 235
BLAST of Spo22572.1 vs. TAIR (Arabidopsis)
Match:
ATCG00170.1 (DNA-directed RNA polymerase family protein)
HSP 1 Score: 306.6 bits (784), Expect = 2.000e-83
Identity = 158/175 (90.29%), Postives = 164/175 (93.71%), Query Frame = 1
Query: 1 MNLEKRIDSWNERITRILGSPWGFMIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIE 60 +NLEKRI WN+ ITRILG PWGF+IGAELTI QSRISLVNKIQKVYRSQGVQIHNRHIE Sbjct: 1158 LNLEKRIKGWNKCITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIE 1217 Query: 61 IIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLLGITRASLNTQ 120 IIVRQITSKVLVSE+GMSNVFLPGELIGL RAERTGRALEEAICYRA LLGITRASLNTQ Sbjct: 1218 IIVRQITSKVLVSEEGMSNVFLPGELIGLLRAERTGRALEEAICYRAVLLGITRASLNTQ 1277 Query: 121 SFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGF-KGFVHHSK 175 SFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGG+IP GTGF KG VH S+ Sbjct: 1278 SFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGVIPAGTGFNKGLVHCSR 1332
BLAST of Spo22572.1 vs. TAIR (Arabidopsis)
Match:
AT4G35800.1 (RNA polymerase II large subunit)
HSP 1 Score: 50.1 bits (118), Expect = 3.300e-6
Identity = 25/67 (37.31%), Postives = 38/67 (56.72%), Query Frame = 1
Query: 101 EAICYRATLLGITRASLNTQSF--ISEASFQETARVLAKAALRGRIDWLKGLKENVVLGG 160 + + YR L+ ITR +N + SF+ET +L AA D L+G+ EN++LG Sbjct: 1394 DTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAAYAETDCLRGVTENIMLGQ 1453 Query: 161 MIPVGTG 166 + P+GTG Sbjct: 1454 LAPIGTG 1460
The following BLAST results are available for this feature:
BLAST of Spo22572.1 vs. NCBI nr
Analysis Date: 2018-06-29 (
blastp Spinacia oleracea peptides vs. NCBI nr )
Total hits: 5
A T G A A T C T A G A A A A G A G G A T T G A T A G T T G G A A C G A A C G T A T A A C A A G A A T T C T T G G A A G T C C T T G G G G A T T C A T G A T T G G G G C T G A G C T A A C T A T A G C G C A A A G T C G T A T T T C T T T G G T T A A C A A G A T C C A A A A G G T T T A T C G A T C A C A A G G G G T G C A G A T C C A C A A T A G A C A T A T A G A A A T T A T T G T A C G T C A A A T A A C A T C A A A A G T C T T G G T T T C A G A A G A T G G A A T G T C T A A T G T T T T T T T G C C C G G A G A A C T A A T T G G A T T G T T T C G G G C G G A A C G A A C G G G A C G C G C T T T G G A A G A A G C G A T A T G T T A C C G C G C T A C C T T A T T G G G A A T A A C G A G A G C A T C T C T G A A T A C T C A A A G T T T T A T C T C C G A A G C G A G T T T T C A A G A A A C T G C T C G A G T T T T A G C A A A A G C A G C T C T A C G G G G C C G T A T T G A T T G G T T G A A A G G A C T A A A A G A A A A C G T T G T T C T G G G G G G G A T G A T A C C T G T T G G T A C C G G A T T C A A A G G A T T C G T A C A C C A T T C A A A G G C T T G T G A T T T A G T T T T T G A T G C A T C A A G T A G A G G A A A A C A A T T T T T A A T T G T T G G G A C A A A A A A T A A A G C A G C T G A T T C A G T A G C A C G G G C T G C A A T A A G G G C T C G C T G T C A T T A T G T T A A T A A A A A G T G G C T T G G G G G G A T G T T A A C G A A T T G G T C C A C G A C A G A A A C G A G A C T T C A C A A A T T C A G G G A C T T G A G A A T G G A A C A A A C G G C A G G G A G A C T C G C T C G T C T T C C A A A G A G A G A T G C G G C G G T G G T G A A G A G A C A A T T A T C T C A C T T G C A A A C A T A T T T G G G G G G G A T C A A A T A T A T G A C A G G G T T A C C G G A T A T T G T A A T C A T C G T T G A T C A A C A G G A A G A A T A T A C G G C C C T T C G A G A A T G T A T T A C T T T G G G A A T T C C A A C T A T T T G T T T A A T T G A T A C A A A T T G T A A C C C G G A T C T C G C A G A T A T T T C G A T T C C G G C A A A T G A T G A C G C T A T A G C T T C A A T T C G A T T A A T T C T T A C C A A A T T A G T A T T T G C A A T T T G T G A A G G C C G C T C T A G C T A T A T A A G A A A T C C T T G A 100 200 300 400 500 600 700 800 900 1000 Expect = 1.20e-127 / Id = 84.32 Expect = 2.10e-119 / Id = 75.08 Expect = 7.30e-112 / Id = 75.25 Expect = 1.30e-97 / Id = 99.45 Expect = 1.10e-96 / Id = 99.45 Sequence EEF38450.1 EEF47920.1 EEF27828.1 NP_054921.1 gi|188036203|pdb|3BBN|B
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BLAST of Spo22572.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (
blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL )
Total hits: 5
A T G A A T C T A G A A A A G A G G A T T G A T A G T T G G A A C G A A C G T A T A A C A A G A A T T C T T G G A A G T C C T T G G G G A T T C A T G A T T G G G G C T G A G C T A A C T A T A G C G C A A A G T C G T A T T T C T T T G G T T A A C A A G A T C C A A A A G G T T T A T C G A T C A C A A G G G G T G C A G A T C C A C A A T A G A C A T A T A G A A A T T A T T G T A C G T C A A A T A A C A T C A A A A G T C T T G G T T T C A G A A G A T G G A A T G T C T A A T G T T T T T T T G C C C G G A G A A C T A A T T G G A T T G T T T C G G G C G G A A C G A A C G G G A C G C G C T T T G G A A G A A G C G A T A T G T T A C C G C G C T A C C T T A T T G G G A A T A A C G A G A G C A T C T C T G A A T A C T C A A A G T T T T A T C T C C G A A G C G A G T T T T C A A G A A A C T G C T C G A G T T T T A G C A A A A G C A G C T C T A C G G G G C C G T A T T G A T T G G T T G A A A G G A C T A A A A G A A A A C G T T G T T C T G G G G G G G A T G A T A C C T G T T G G T A C C G G A T T C A A A G G A T T C G T A C A C C A T T C A A A G G C T T G T G A T T T A G T T T T T G A T G C A T C A A G T A G A G G A A A A C A A T T T T T A A T T G T T G G G A C A A A A A A T A A A G C A G C T G A T T C A G T A G C A C G G G C T G C A A T A A G G G C T C G C T G T C A T T A T G T T A A T A A A A A G T G G C T T G G G G G G A T G T T A A C G A A T T G G T C C A C G A C A G A A A C G A G A C T T C A C A A A T T C A G G G A C T T G A G A A T G G A A C A A A C G G C A G G G A G A C T C G C T C G T C T T C C A A A G A G A G A T G C G G C G G T G G T G A A G A G A C A A T T A T C T C A C T T G C A A A C A T A T T T G G G G G G G A T C A A A T A T A T G A C A G G G T T A C C G G A T A T T G T A A T C A T C G T T G A T C A A C A G G A A G A A T A T A C G G C C C T T C G A G A A T G T A T T A C T T T G G G A A T T C C A A C T A T T T G T T T A A T T G A T A C A A A T T G T A A C C C G G A T C T C G C A G A T A T T T C G A T T C C G G C A A A T G A T G A C G C T A T A G C T T C A A T T C G A T T A A T T C T T A C C A A A T T A G T A T T T G C A A T T T G T G A A G G C C G C T C T A G C T A T A T A A G A A A T C C T T G A 100 200 300 400 500 600 700 800 900 1000 Expect = 8.60e-128 / Id = 84.32 Expect = 1.50e-119 / Id = 75.08 Expect = 5.10e-112 / Id = 75.25 Expect = 3.90e-96 / Id = 97.80 Expect = 1.10e-95 / Id = 97.25 Sequence B9SD12_RICCO B9RL05_RICCO B9T8I6_RICCO A0A023ZQR1_BETVU A0A165XMG5_9CARY
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BLAST of Spo22572.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (
blastp Spinacia oleracea peptides vs. ExPASy SwissProt )
Total hits: 5
A T G A A T C T A G A A A A G A G G A T T G A T A G T T G G A A C G A A C G T A T A A C A A G A A T T C T T G G A A G T C C T T G G G G A T T C A T G A T T G G G G C T G A G C T A A C T A T A G C G C A A A G T C G T A T T T C T T T G G T T A A C A A G A T C C A A A A G G T T T A T C G A T C A C A A G G G G T G C A G A T C C A C A A T A G A C A T A T A G A A A T T A T T G T A C G T C A A A T A A C A T C A A A A G T C T T G G T T T C A G A A G A T G G A A T G T C T A A T G T T T T T T T G C C C G G A G A A C T A A T T G G A T T G T T T C G G G C G G A A C G A A C G G G A C G C G C T T T G G A A G A A G C G A T A T G T T A C C G C G C T A C C T T A T T G G G A A T A A C G A G A G C A T C T C T G A A T A C T C A A A G T T T T A T C T C C G A A G C G A G T T T T C A A G A A A C T G C T C G A G T T T T A G C A A A A G C A G C T C T A C G G G G C C G T A T T G A T T G G T T G A A A G G A C T A A A A G A A A A C G T T G T T C T G G G G G G G A T G A T A C C T G T T G G T A C C G G A T T C A A A G G A T T C G T A C A C C A T T C A A A G G C T T G T G A T T T A G T T T T T G A T G C A T C A A G T A G A G G A A A A C A A T T T T T A A T T G T T G G G A C A A A A A A T A A A G C A G C T G A T T C A G T A G C A C G G G C T G C A A T A A G G G C T C G C T G T C A T T A T G T T A A T A A A A A G T G G C T T G G G G G G A T G T T A A C G A A T T G G T C C A C G A C A G A A A C G A G A C T T C A C A A A T T C A G G G A C T T G A G A A T G G A A C A A A C G G C A G G G A G A C T C G C T C G T C T T C C A A A G A G A G A T G C G G C G G T G G T G A A G A G A C A A T T A T C T C A C T T G C A A A C A T A T T T G G G G G G G A T C A A A T A T A T G A C A G G G T T A C C G G A T A T T G T A A T C A T C G T T G A T C A A C A G G A A G A A T A T A C G G C C C T T C G A G A A T G T A T T A C T T T G G G A A T T C C A A C T A T T T G T T T A A T T G A T A C A A A T T G T A A C C C G G A T C T C G C A G A T A T T T C G A T T C C G G C A A A T G A T G A C G C T A T A G C T T C A A T T C G A T T A A T T C T T A C C A A A T T A G T A T T T G C A A T T T G T G A A G G C C G C T C T A G C T A T A T A A G A A A T C C T T G A 100 200 300 400 500 600 700 800 900 1000 Expect = 8.30e-100 / Id = 99.45 Expect = 1.60e-95 / Id = 95.05 Expect = 5.20e-94 / Id = 93.41 Expect = 9.90e-93 / Id = 92.31 Expect = 3.80e-92 / Id = 92.82 Sequence RR2_SPIOL RR2_EUCGG RR2_VITVI RR2_COFAR RR2_CARPA
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BLAST of Spo22572.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (
blastp Spinacia oleracea peptides vs. TAIR )
Total hits: 3
A T G A A T C T A G A A A A G A G G A T T G A T A G T T G G A A C G A A C G T A T A A C A A G A A T T C T T G G A A G T C C T T G G G G A T T C A T G A T T G G G G C T G A G C T A A C T A T A G C G C A A A G T C G T A T T T C T T T G G T T A A C A A G A T C C A A A A G G T T T A T C G A T C A C A A G G G G T G C A G A T C C A C A A T A G A C A T A T A G A A A T T A T T G T A C G T C A A A T A A C A T C A A A A G T C T T G G T T T C A G A A G A T G G A A T G T C T A A T G T T T T T T T G C C C G G A G A A C T A A T T G G A T T G T T T C G G G C G G A A C G A A C G G G A C G C G C T T T G G A A G A A G C G A T A T G T T A C C G C G C T A C C T T A T T G G G A A T A A C G A G A G C A T C T C T G A A T A C T C A A A G T T T T A T C T C C G A A G C G A G T T T T C A A G A A A C T G C T C G A G T T T T A G C A A A A G C A G C T C T A C G G G G C C G T A T T G A T T G G T T G A A A G G A C T A A A A G A A A A C G T T G T T C T G G G G G G G A T G A T A C C T G T T G G T A C C G G A T T C A A A G G A T T C G T A C A C C A T T C A A A G G C T T G T G A T T T A G T T T T T G A T G C A T C A A G T A G A G G A A A A C A A T T T T T A A T T G T T G G G A C A A A A A A T A A A G C A G C T G A T T C A G T A G C A C G G G C T G C A A T A A G G G C T C G C T G T C A T T A T G T T A A T A A A A A G T G G C T T G G G G G G A T G T T A A C G A A T T G G T C C A C G A C A G A A A C G A G A C T T C A C A A A T T C A G G G A C T T G A G A A T G G A A C A A A C G G C A G G G A G A C T C G C T C G T C T T C C A A A G A G A G A T G C G G C G G T G G T G A A G A G A C A A T T A T C T C A C T T G C A A A C A T A T T T G G G G G G G A T C A A A T A T A T G A C A G G G T T A C C G G A T A T T G T A A T C A T C G T T G A T C A A C A G G A A G A A T A T A C G G C C C T T C G A G A A T G T A T T A C T T T G G G A A T T C C A A C T A T T T G T T T A A T T G A T A C A A A T T G T A A C C C G G A T C T C G C A G A T A T T T C G A T T C C G G C A A A T G A T G A C G C T A T A G C T T C A A T T C G A T T A A T T C T T A C C A A A T T A G T A T T T G C A A T T T G T G A A G G C C G C T C T A G C T A T A T A A G A A A T C C T T G A 100 200 300 400 500 600 700 800 900 1000 Expect = 1.20e-88 / Id = 88.95 Expect = 2.00e-83 / Id = 90.29 Expect = 3.30e-6 / Id = 37.31 Sequence ATCG00160.1 ATCG00170.1 AT4G35800.1
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