Spo16266.1 (mRNA) | SpinachBase

Overview


Name	Spo16266.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	30S ribosomal protein S7, chloroplastic
Location	SpoScf_05165 : 4873 .. 5364 (+)
Sequence length	492

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGCCGGAGCTGCTTCCAATTGCTCGGAAATTCTCAGTTATATGGGGGGCTTAGATAGTGAGCAAAAACAATTGATCAAGAAATTGGTAAACTTTCACATGAAAGAAGGTAAAAGAACGAAGGTTCGTGCTATTGTTTATCAAACTTTTCATCGCCCAGCTCGAACTGAAGGCGATGTAATCAAACTTATGGTTGACGCCGTGGAGAATATAAAGCCCATATGCAAAGTAGAAAAAGTAAGAGTAGCAGGTACTATTTATGATGTCCCCGGGATTGTAGCCAGGGATCGTCAACAAACCTTAGCTATTCGTTGGATCCTTGAAGCAGCTTTCAAACGACGTATATCCTACAGGATAAGCTTAGAGAAATGTTCATTTGATGAGATACTGGATGCTTACCGAAAGAGGGGAATTTCGCGTAAGAAAAGGGAGAATCTTCATGGACTGGCTTCCGCCAATCGAAGTTTCGCGCATTTCAGATGGTGGTAA

mRNA sequence

ATGGGTGCCGGAGCTGCTTCCAATTGCTCGGAAATTCTCAGTTATATGGGGGGCTTAGATAGTGAGCAAAAACAATTGATCAAGAAATTGGTAAACTTTCACATGAAAGAAGGTAAAAGAACGAAGGTTCGTGCTATTGTTTATCAAACTTTTCATCGCCCAGCTCGAACTGAAGGCGATGTAATCAAACTTATGGTTGACGCCGTGGAGAATATAAAGCCCATATGCAAAGTAGAAAAAGTAAGAGTAGCAGGTACTATTTATGATGTCCCCGGGATTGTAGCCAGGGATCGTCAACAAACCTTAGCTATTCGTTGGATCCTTGAAGCAGCTTTCAAACGACGTATATCCTACAGGATAAGCTTAGAGAAATGTTCATTTGATGAGATACTGGATGCTTACCGAAAGAGGGGAATTTCGCGTAAGAAAAGGGAGAATCTTCATGGACTGGCTTCCGCCAATCGAAGTTTCGCGCATTTCAGATGGTGGTAA

Coding sequence (CDS)

ATGGGTGCCGGAGCTGCTTCCAATTGCTCGGAAATTCTCAGTTATATGGGGGGCTTAGATAGTGAGCAAAAACAATTGATCAAGAAATTGGTAAACTTTCACATGAAAGAAGGTAAAAGAACGAAGGTTCGTGCTATTGTTTATCAAACTTTTCATCGCCCAGCTCGAACTGAAGGCGATGTAATCAAACTTATGGTTGACGCCGTGGAGAATATAAAGCCCATATGCAAAGTAGAAAAAGTAAGAGTAGCAGGTACTATTTATGATGTCCCCGGGATTGTAGCCAGGGATCGTCAACAAACCTTAGCTATTCGTTGGATCCTTGAAGCAGCTTTCAAACGACGTATATCCTACAGGATAAGCTTAGAGAAATGTTCATTTGATGAGATACTGGATGCTTACCGAAAGAGGGGAATTTCGCGTAAGAAAAGGGAGAATCTTCATGGACTGGCTTCCGCCAATCGAAGTTTCGCGCATTTCAGATGGTGGTAA

Protein sequence

MGAGAASNCSEILSYMGGLDSEQKQLIKKLVNFHMKEGKRTKVRAIVYQTFHRPARTEGDVIKLMVDAVENIKPICKVEKVRVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFDEILDAYRKRGISRKKRENLHGLASANRSFAHFRWW

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo16266	Spo16266	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo16266.1	Spo16266.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo16266.1.exon.1	Spo16266.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo16266.1.CDS.1	Spo16266.1.CDS.1	CDS

Homology

[Close]

BLAST of Spo16266.1 vs. NCBI nr
Match: gi|54606711|dbj|BAD66734.1| (ribosomal protein S7 (mitochondrion) [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 294.7 bits (753), Expect = 1.000e-76
Identity = 147/148 (99.32%), Postives = 148/148 (100.00%), Query Frame = 1

		  
Query: 16  MGGLDSEQKQLIKKLVNFHMKEGKRTKVRAIVYQTFHRPARTEGDVIKLMVDAVENIKPI 75
           MGGLDSEQKQLIKKLVNFHMKEGKRTKVRAIVYQTFHRPARTEGDVIKLM+DAVENIKPI
Sbjct: 1   MGGLDSEQKQLIKKLVNFHMKEGKRTKVRAIVYQTFHRPARTEGDVIKLMIDAVENIKPI 60

Query: 76  CKVEKVRVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFDEILDAYR 135
           CKVEKVRVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFDEILDAYR
Sbjct: 61  CKVEKVRVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFDEILDAYR 120

Query: 136 KRGISRKKRENLHGLASANRSFAHFRWW 164
           KRGISRKKRENLHGLASANRSFAHFRWW
Sbjct: 121 KRGISRKKRENLHGLASANRSFAHFRWW 148

[Close]

BLAST of Spo16266.1 vs. NCBI nr
Match: gi|162279925|ref|NP_064059.2| (rps7 gene product (mitochondrion) [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 288.5 bits (737), Expect = 7.300e-75
Identity = 145/148 (97.97%), Postives = 146/148 (98.65%), Query Frame = 1

		  
Query: 16  MGGLDSEQKQLIKKLVNFHMKEGKRTKVRAIVYQTFHRPARTEGDVIKLMVDAVENIKPI 75
           MGGLDSEQKQLIKKLVNFHMKEGKRTKVRAIVYQTFHR ARTEGDVIKLM+DAVENIKPI
Sbjct: 1   MGGLDSEQKQLIKKLVNFHMKEGKRTKVRAIVYQTFHRLARTEGDVIKLMIDAVENIKPI 60

Query: 76  CKVEKVRVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFDEILDAYR 135
           CKVEKVRVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKC FDEILDAYR
Sbjct: 61  CKVEKVRVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCLFDEILDAYR 120

Query: 136 KRGISRKKRENLHGLASANRSFAHFRWW 164
           KRGISRKKRENLHGLASANRSFAHFRWW
Sbjct: 121 KRGISRKKRENLHGLASANRSFAHFRWW 148

[Close]

BLAST of Spo16266.1 vs. NCBI nr
Match: gi|927682212|gb|ALE29224.1| (ribosomal protein S7 (mitochondrion) [Heuchera parviflora var. saurensis])

HSP 1 Score: 277.7 bits (709), Expect = 1.300e-71
Identity = 140/148 (94.59%), Postives = 143/148 (96.62%), Query Frame = 1

		  
Query: 16  MGGLDSEQKQLIKKLVNFHMKEGKRTKVRAIVYQTFHRPARTEGDVIKLMVDAVENIKPI 75
           MGGLDSEQKQLIKKLVNF MKEGKRT+VRAIVYQTFHRPARTE DVIKLMVDAVENIKPI
Sbjct: 1   MGGLDSEQKQLIKKLVNFRMKEGKRTRVRAIVYQTFHRPARTERDVIKLMVDAVENIKPI 60

Query: 76  CKVEKVRVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFDEILDAYR 135
           C+VEKV VAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSF EILDAYR
Sbjct: 61  CEVEKVGVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFAEILDAYR 120

Query: 136 KRGISRKKRENLHGLASANRSFAHFRWW 164
           KRGI+RKKRENLHGLAS NRSFAHFRWW
Sbjct: 121 KRGIARKKRENLHGLASTNRSFAHFRWW 148

[Close]

BLAST of Spo16266.1 vs. NCBI nr
Match: gi|849123226|ref|YP_009153930.1| (ribosomal protein S7 (mitochondrion) [Gossypium hirsutum])

HSP 1 Score: 274.2 bits (700), Expect = 1.400e-70
Identity = 136/148 (91.89%), Postives = 142/148 (95.95%), Query Frame = 1

		  
Query: 16  MGGLDSEQKQLIKKLVNFHMKEGKRTKVRAIVYQTFHRPARTEGDVIKLMVDAVENIKPI 75
           MGGLD EQKQLIKKLVNF MKEGKRT+VRAI YQTFHRPARTE DVIKLMVDAVENIKPI
Sbjct: 1   MGGLDGEQKQLIKKLVNFRMKEGKRTRVRAIFYQTFHRPARTERDVIKLMVDAVENIKPI 60

Query: 76  CKVEKVRVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFDEILDAYR 135
           C+VEKVR+AGTIYDVPGIVA+DRQQTLAIRWILEAAFKRRISYRISLEKCSF EILDAYR
Sbjct: 61  CEVEKVRIAGTIYDVPGIVAKDRQQTLAIRWILEAAFKRRISYRISLEKCSFAEILDAYR 120

Query: 136 KRGISRKKRENLHGLASANRSFAHFRWW 164
           KRGI+RKKRENLHGL+S NRSFAHFRWW
Sbjct: 121 KRGIARKKRENLHGLSSTNRSFAHFRWW 148

[Close]

BLAST of Spo16266.1 vs. NCBI nr
Match: gi|939575832|ref|YP_009173837.1| (ribosomal protein S7 (mitochondrion) [Populus tremula])

HSP 1 Score: 273.5 bits (698), Expect = 2.400e-70
Identity = 137/148 (92.57%), Postives = 141/148 (95.27%), Query Frame = 1

		  
Query: 16  MGGLDSEQKQLIKKLVNFHMKEGKRTKVRAIVYQTFHRPARTEGDVIKLMVDAVENIKPI 75
           MG LD EQKQLIKKLVNF MKEGKRT+VRAIVYQTFHRPARTE DVIKLMVDA+ENIKPI
Sbjct: 1   MGSLDGEQKQLIKKLVNFRMKEGKRTRVRAIVYQTFHRPARTERDVIKLMVDAIENIKPI 60

Query: 76  CKVEKVRVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFDEILDAYR 135
           C+VEKV VAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSF EILDAYR
Sbjct: 61  CEVEKVGVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFAEILDAYR 120

Query: 136 KRGISRKKRENLHGLASANRSFAHFRWW 164
           KRGI+RKKRENLHGLAS NRSFAHFRWW
Sbjct: 121 KRGIARKKRENLHGLASTNRSFAHFRWW 148

[Close]

BLAST of Spo16266.1 vs. UniProtKB/TrEMBL
Match: Q5U6D2_BETVU (Ribosomal protein S7 OS=Beta vulgaris subsp. vulgaris GN=rps7 PE=4 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 7.100e-77
Identity = 147/148 (99.32%), Postives = 148/148 (100.00%), Query Frame = 1

		  
Query: 16  MGGLDSEQKQLIKKLVNFHMKEGKRTKVRAIVYQTFHRPARTEGDVIKLMVDAVENIKPI 75
           MGGLDSEQKQLIKKLVNFHMKEGKRTKVRAIVYQTFHRPARTEGDVIKLM+DAVENIKPI
Sbjct: 1   MGGLDSEQKQLIKKLVNFHMKEGKRTKVRAIVYQTFHRPARTEGDVIKLMIDAVENIKPI 60

Query: 76  CKVEKVRVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFDEILDAYR 135
           CKVEKVRVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFDEILDAYR
Sbjct: 61  CKVEKVRVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFDEILDAYR 120

Query: 136 KRGISRKKRENLHGLASANRSFAHFRWW 164
           KRGISRKKRENLHGLASANRSFAHFRWW
Sbjct: 121 KRGISRKKRENLHGLASANRSFAHFRWW 148

[Close]

BLAST of Spo16266.1 vs. UniProtKB/TrEMBL
Match: G2XLN3_BETMA (Ribosomal protein S7 OS=Beta macrocarpa GN=rps7 PE=4 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 5.100e-75
Identity = 145/148 (97.97%), Postives = 146/148 (98.65%), Query Frame = 1

		  
Query: 16  MGGLDSEQKQLIKKLVNFHMKEGKRTKVRAIVYQTFHRPARTEGDVIKLMVDAVENIKPI 75
           MGGLDSEQKQLIKKLVNFHMKEGKRTKVRAIVYQTFHR ARTEGDVIKLM+DAVENIKPI
Sbjct: 1   MGGLDSEQKQLIKKLVNFHMKEGKRTKVRAIVYQTFHRLARTEGDVIKLMIDAVENIKPI 60

Query: 76  CKVEKVRVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFDEILDAYR 135
           CKVEKVRVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKC FDEILDAYR
Sbjct: 61  CKVEKVRVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCLFDEILDAYR 120

Query: 136 KRGISRKKRENLHGLASANRSFAHFRWW 164
           KRGISRKKRENLHGLASANRSFAHFRWW
Sbjct: 121 KRGISRKKRENLHGLASANRSFAHFRWW 148

[Close]

BLAST of Spo16266.1 vs. UniProtKB/TrEMBL
Match: E6ZE69_BETVM (Ribosomal protein S7 OS=Beta vulgaris subsp. maritima GN=rps7 PE=4 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 5.100e-75
Identity = 145/148 (97.97%), Postives = 146/148 (98.65%), Query Frame = 1

		  
Query: 16  MGGLDSEQKQLIKKLVNFHMKEGKRTKVRAIVYQTFHRPARTEGDVIKLMVDAVENIKPI 75
           MGGLDSEQKQLIKKLVNFHMKEGKRTKVRAIVYQTFHR ARTEGDVIKLM+DAVENIKPI
Sbjct: 1   MGGLDSEQKQLIKKLVNFHMKEGKRTKVRAIVYQTFHRLARTEGDVIKLMIDAVENIKPI 60

Query: 76  CKVEKVRVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFDEILDAYR 135
           CKVEKVRVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKC FDEILDAYR
Sbjct: 61  CKVEKVRVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCLFDEILDAYR 120

Query: 136 KRGISRKKRENLHGLASANRSFAHFRWW 164
           KRGISRKKRENLHGLASANRSFAHFRWW
Sbjct: 121 KRGISRKKRENLHGLASANRSFAHFRWW 148

[Close]

BLAST of Spo16266.1 vs. UniProtKB/TrEMBL
Match: A0A0M4MPL4_9MAGN (Ribosomal protein S7 OS=Heuchera parviflora var. saurensis GN=rps7 PE=4 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 9.000e-72
Identity = 140/148 (94.59%), Postives = 143/148 (96.62%), Query Frame = 1

		  
Query: 16  MGGLDSEQKQLIKKLVNFHMKEGKRTKVRAIVYQTFHRPARTEGDVIKLMVDAVENIKPI 75
           MGGLDSEQKQLIKKLVNF MKEGKRT+VRAIVYQTFHRPARTE DVIKLMVDAVENIKPI
Sbjct: 1   MGGLDSEQKQLIKKLVNFRMKEGKRTRVRAIVYQTFHRPARTERDVIKLMVDAVENIKPI 60

Query: 76  CKVEKVRVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFDEILDAYR 135
           C+VEKV VAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSF EILDAYR
Sbjct: 61  CEVEKVGVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFAEILDAYR 120

Query: 136 KRGISRKKRENLHGLASANRSFAHFRWW 164
           KRGI+RKKRENLHGLAS NRSFAHFRWW
Sbjct: 121 KRGIARKKRENLHGLASTNRSFAHFRWW 148

[Close]

BLAST of Spo16266.1 vs. UniProtKB/TrEMBL
Match: A0A0N7D4B5_GOSBA (Ribosomal protein S7 OS=Gossypium barbadense GN=rps7 PE=4 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 9.900e-71
Identity = 136/148 (91.89%), Postives = 142/148 (95.95%), Query Frame = 1

		  
Query: 16  MGGLDSEQKQLIKKLVNFHMKEGKRTKVRAIVYQTFHRPARTEGDVIKLMVDAVENIKPI 75
           MGGLD EQKQLIKKLVNF MKEGKRT+VRAI YQTFHRPARTE DVIKLMVDAVENIKPI
Sbjct: 1   MGGLDGEQKQLIKKLVNFRMKEGKRTRVRAIFYQTFHRPARTERDVIKLMVDAVENIKPI 60

Query: 76  CKVEKVRVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFDEILDAYR 135
           C+VEKVR+AGTIYDVPGIVA+DRQQTLAIRWILEAAFKRRISYRISLEKCSF EILDAYR
Sbjct: 61  CEVEKVRIAGTIYDVPGIVAKDRQQTLAIRWILEAAFKRRISYRISLEKCSFAEILDAYR 120

Query: 136 KRGISRKKRENLHGLASANRSFAHFRWW 164
           KRGI+RKKRENLHGL+S NRSFAHFRWW
Sbjct: 121 KRGIARKKRENLHGLSSTNRSFAHFRWW 148

[Close]

BLAST of Spo16266.1 vs. ExPASy Swiss-Prot
Match: RT07_BETVU (Ribosomal protein S7, mitochondrial OS=Beta vulgaris GN=RPS7 PE=2 SV=2)

HSP 1 Score: 288.5 bits (737), Expect = 4.600e-77
Identity = 145/148 (97.97%), Postives = 146/148 (98.65%), Query Frame = 1

		  
Query: 16  MGGLDSEQKQLIKKLVNFHMKEGKRTKVRAIVYQTFHRPARTEGDVIKLMVDAVENIKPI 75
           MGGLDSEQKQLIKKLVNFHMKEGKRTKVRAIVYQTFHR ARTEGDVIKLM+DAVENIKPI
Sbjct: 1   MGGLDSEQKQLIKKLVNFHMKEGKRTKVRAIVYQTFHRLARTEGDVIKLMIDAVENIKPI 60

Query: 76  CKVEKVRVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFDEILDAYR 135
           CKVEKVRVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKC FDEILDAYR
Sbjct: 61  CKVEKVRVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCLFDEILDAYR 120

Query: 136 KRGISRKKRENLHGLASANRSFAHFRWW 164
           KRGISRKKRENLHGLASANRSFAHFRWW
Sbjct: 121 KRGISRKKRENLHGLASANRSFAHFRWW 148

[Close]

BLAST of Spo16266.1 vs. ExPASy Swiss-Prot
Match: RT07_ARATH (Ribosomal protein S7, mitochondrial OS=Arabidopsis thaliana GN=RPS7 PE=2 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 2.400e-70
Identity = 134/148 (90.54%), Postives = 139/148 (93.92%), Query Frame = 1

		  
Query: 16  MGGLDSEQKQLIKKLVNFHMKEGKRTKVRAIVYQTFHRPARTEGDVIKLMVDAVENIKPI 75
           MGGLD EQK LIKKLVNF MKEGKRT+VRAIVYQTFHRPARTE DVIKLMVDAVENIKPI
Sbjct: 1   MGGLDGEQKLLIKKLVNFRMKEGKRTRVRAIVYQTFHRPARTERDVIKLMVDAVENIKPI 60

Query: 76  CKVEKVRVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFDEILDAYR 135
           C+V KV VAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSF EILDAY+
Sbjct: 61  CEVAKVGVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFAEILDAYQ 120

Query: 136 KRGISRKKRENLHGLASANRSFAHFRWW 164
           KRG +R+KRENLHGLAS NRSFAHFRWW
Sbjct: 121 KRGSARRKRENLHGLASTNRSFAHFRWW 148

[Close]

BLAST of Spo16266.1 vs. ExPASy Swiss-Prot
Match: RT07_WHEAT (Ribosomal protein S7, mitochondrial OS=Triticum aestivum GN=RPS7 PE=3 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 7.300e-67
Identity = 129/148 (87.16%), Postives = 136/148 (91.89%), Query Frame = 1

		  
Query: 16  MGGLDSEQKQLIKKLVNFHMKEGKRTKVRAIVYQTFHRPARTEGDVIKLMVDAVENIKPI 75
           MG  D EQK+LIKKLVNF M +GKRT+VRAIVY+TFHR ARTE DVIKLMVDAV+NIKPI
Sbjct: 1   MGDFDGEQKELIKKLVNFRMIDGKRTRVRAIVYKTFHRLARTERDVIKLMVDAVDNIKPI 60

Query: 76  CKVEKVRVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFDEILDAYR 135
           C+V KV VAGTIYDVPGIVARDRQQTLAIRWIL AAFKRRISYRISLEKCSF EILDAYR
Sbjct: 61  CEVVKVGVAGTIYDVPGIVARDRQQTLAIRWILGAAFKRRISYRISLEKCSFAEILDAYR 120

Query: 136 KRGISRKKRENLHGLASANRSFAHFRWW 164
           KRGISRK+RENLHGLAS NRSFAHFRWW
Sbjct: 121 KRGISRKRRENLHGLASTNRSFAHFRWW 148

[Close]

BLAST of Spo16266.1 vs. ExPASy Swiss-Prot
Match: RT07_MARPO (Ribosomal protein S7, mitochondrial OS=Marchantia polymorpha GN=RPS7 PE=3 SV=2)

HSP 1 Score: 191.0 bits (484), Expect = 9.900e-48
Identity = 96/157 (61.15%), Postives = 130/157 (82.80%), Query Frame = 1

		  
Query: 8   NCSEILSYMGGLDSEQKQLIKKLVNFHMKEGKRTKVRAIVYQTFHRPARTEGDVIKLMVD 67
           NCS+ L Y+ GL+ +QKQLIKKLV+  M +GK+T+ RAIVY+TFHR A   GDVIKL+V+
Sbjct: 75  NCSDNLGYIRGLNGKQKQLIKKLVHICMIDGKKTRSRAIVYKTFHRLA-PHGDVIKLLVN 134

Query: 68  AVENIKPICKVEKVRVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYR-ISLEKCS 127
           A+EN+KPIC+V+KVR++GT   VP I+A +RQ+TLAIRW+LE+A KRR+  + ISL++C 
Sbjct: 135 AIENVKPICEVKKVRISGTTRLVPSIIATNRQETLAIRWMLESAAKRRMGKKSISLDQCL 194

Query: 128 FDEILDAYRKRGISRKKRENLHGLASANRSFAHFRWW 164
           + EIL+A +K GI+RKKR++LH LA ANRSF+H+RWW
Sbjct: 195 YAEILEASQKMGIARKKRDDLHKLAEANRSFSHYRWW 230

[Close]

BLAST of Spo16266.1 vs. ExPASy Swiss-Prot
Match: RS7_PERMH (30S ribosomal protein S7 OS=Persephonella marina (strain DSM 14350 / EX-H1) GN=rpsG PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 9.400e-22
Identity = 57/138 (41.30%), Postives = 84/138 (60.87%), Query Frame = 1

		  
Query: 26  LIKKLVNFHMKEGKRTKVRAIVYQTFHRPARTEGD-VIKLMVDAVENIKPICKVEKVRVA 85
           L+ KL+N  MK+GK++K   IVY      A   GD  +  +  A+ENIKP+ +V   RV 
Sbjct: 22  LVHKLINKVMKDGKKSKAEKIVYTAMKNLAEKTGDDPLTALHKAIENIKPVLEVRPRRVG 81

Query: 86  GTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFDEILDAYRKRGISRKKR 145
           G+ Y VP  V   RQ +LA+RW++EAA  R      ++ +   +E+ DAY  RG + KK+
Sbjct: 82  GSTYQVPMEVPPRRQISLALRWLVEAARNRSGKGNYTMIEKLTNELFDAYNNRGAAVKKK 141

Query: 146 ENLHGLASANRSFAHFRW 163
           E+ H +A AN++FAH+RW
Sbjct: 142 EDTHRMAEANKAFAHYRW 159

[Close]

BLAST of Spo16266.1 vs. TAIR (Arabidopsis)
Match: AT2G07696.1 (Ribosomal protein S7p/S5e family protein)

HSP 1 Score: 266.2 bits (679), Expect = 1.400e-71
Identity = 134/148 (90.54%), Postives = 139/148 (93.92%), Query Frame = 1

		  
Query: 16  MGGLDSEQKQLIKKLVNFHMKEGKRTKVRAIVYQTFHRPARTEGDVIKLMVDAVENIKPI 75
           MGGLD EQK LIKKLVNF MKEGKRT+VRAIVYQTFHRPARTE DVIKLMVDAVENIKPI
Sbjct: 1   MGGLDGEQKLLIKKLVNFRMKEGKRTRVRAIVYQTFHRPARTERDVIKLMVDAVENIKPI 60

Query: 76  CKVEKVRVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFDEILDAYR 135
           C+V KV VAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSF EILDAY+
Sbjct: 61  CEVAKVGVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFAEILDAYQ 120

Query: 136 KRGISRKKRENLHGLASANRSFAHFRWW 164
           KRG +R+KRENLHGLAS NRSFAHFRWW
Sbjct: 121 KRGSARRKRENLHGLASTNRSFAHFRWW 148

[Close]

BLAST of Spo16266.1 vs. TAIR (Arabidopsis)
Match: ATMG01270.1 (mitochondrial ribosomal protein S7)

HSP 1 Score: 266.2 bits (679), Expect = 1.400e-71
Identity = 134/148 (90.54%), Postives = 139/148 (93.92%), Query Frame = 1

		  
Query: 16  MGGLDSEQKQLIKKLVNFHMKEGKRTKVRAIVYQTFHRPARTEGDVIKLMVDAVENIKPI 75
           MGGLD EQK LIKKLVNF MKEGKRT+VRAIVYQTFHRPARTE DVIKLMVDAVENIKPI
Sbjct: 1   MGGLDGEQKLLIKKLVNFRMKEGKRTRVRAIVYQTFHRPARTERDVIKLMVDAVENIKPI 60

Query: 76  CKVEKVRVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFDEILDAYR 135
           C+V KV VAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSF EILDAY+
Sbjct: 61  CEVAKVGVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFAEILDAYQ 120

Query: 136 KRGISRKKRENLHGLASANRSFAHFRWW 164
           KRG +R+KRENLHGLAS NRSFAHFRWW
Sbjct: 121 KRGSARRKRENLHGLASTNRSFAHFRWW 148

[Close]

BLAST of Spo16266.1 vs. TAIR (Arabidopsis)
Match: ATCG01240.1 (ribosomal protein S7)

HSP 1 Score: 75.1 bits (183), Expect = 4.500e-14
Identity = 45/143 (31.47%), Postives = 82/143 (57.34%), Query Frame = 1

		  
Query: 23  QKQLIKKLVNFHMKEGKRTKVRAIVYQTFHR-PARTEGDVIKLMVDAVENIKPICKVEKV 82
           + +L+  LVN  +K GK++    I+Y+   +   +TE + + ++  A+  + P   V+  
Sbjct: 19  RNRLVNMLVNRILKHGKKSLAYQIIYRALKKIQQKTETNPLSVLRQAIRGVTPDIAVKAR 78

Query: 83  RVAGTIYDVPGIVARDRQQTLAIRWILEAAFKR---RISYRISLEKCSFDEILDAYRKRG 142
           RV G+ + VP  +   + + LAIRW+L A+ KR    +++++S       E++DA +  G
Sbjct: 79  RVGGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRNMAFKLS------SELVDAAKGSG 138

Query: 143 ISRKKRENLHGLASANRSFAHFR 162
            + +K+E  H +A ANR+FAHFR
Sbjct: 139 DAIRKKEETHRMAEANRAFAHFR 155

[Close]

BLAST of Spo16266.1 vs. TAIR (Arabidopsis)
Match: ATCG00900.1 (Ribosomal protein S7p/S5e family protein)

HSP 1 Score: 75.1 bits (183), Expect = 4.500e-14
Identity = 45/143 (31.47%), Postives = 82/143 (57.34%), Query Frame = 1

		  
Query: 23  QKQLIKKLVNFHMKEGKRTKVRAIVYQTFHR-PARTEGDVIKLMVDAVENIKPICKVEKV 82
           + +L+  LVN  +K GK++    I+Y+   +   +TE + + ++  A+  + P   V+  
Sbjct: 19  RNRLVNMLVNRILKHGKKSLAYQIIYRALKKIQQKTETNPLSVLRQAIRGVTPDIAVKAR 78

Query: 83  RVAGTIYDVPGIVARDRQQTLAIRWILEAAFKR---RISYRISLEKCSFDEILDAYRKRG 142
           RV G+ + VP  +   + + LAIRW+L A+ KR    +++++S       E++DA +  G
Sbjct: 79  RVGGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRNMAFKLS------SELVDAAKGSG 138

Query: 143 ISRKKRENLHGLASANRSFAHFR 162
            + +K+E  H +A ANR+FAHFR
Sbjct: 139 DAIRKKEETHRMAEANRAFAHFR 155

The following BLAST results are available for this feature:

BLAST of Spo16266.1 vs. NCBI nr
BLAST of Spo16266.1 vs. UniProtKB/TrEMBL
BLAST of Spo16266.1 vs. ExPASy Swiss-Prot
BLAST of Spo16266.1 vs. TAIR (Arabidopsis)

BLAST of Spo16266.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
gi\|54606711\|dbj\|BAD66734.1\|	1.0e-76	99.3	ribosomal protein S7 (mitochon...	[more]
gi\|162279925\|ref\|NP_064059.2\|	7.3e-75	97.9	rps7 gene product (mitochondri...	[more]
gi\|927682212\|gb\|ALE29224.1\|	1.3e-71	94.5	ribosomal protein S7 (mitochon...	[more]
gi\|849123226\|ref\|YP_009153930.1\|	1.4e-70	91.8	ribosomal protein S7 (mitochon...	[more]
gi\|939575832\|ref\|YP_009173837.1\|	2.4e-70	92.5	ribosomal protein S7 (mitochon...	[more]

BLAST of Spo16266.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
Q5U6D2_BETVU	7.1e-77	99.3	Ribosomal protein S7 OS=Beta v...	[more]
G2XLN3_BETMA	5.1e-75	97.9	Ribosomal protein S7 OS=Beta m...	[more]
E6ZE69_BETVM	5.1e-75	97.9	Ribosomal protein S7 OS=Beta v...	[more]
A0A0M4MPL4_9MAGN	9.0e-72	94.5	Ribosomal protein S7 OS=Heuche...	[more]
A0A0N7D4B5_GOSBA	9.9e-71	91.8	Ribosomal protein S7 OS=Gossyp...	[more]

BLAST of Spo16266.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
RT07_BETVU	4.6e-77	97.9	Ribosomal protein S7, mitochon...	[more]
RT07_ARATH	2.4e-70	90.5	Ribosomal protein S7, mitochon...	[more]
RT07_WHEAT	7.3e-67	87.1	Ribosomal protein S7, mitochon...	[more]
RT07_MARPO	9.9e-48	61.1	Ribosomal protein S7, mitochon...	[more]
RS7_PERMH	9.4e-22	41.3	30S ribosomal protein S7 OS=Pe...	[more]

BLAST of Spo16266.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 4

Position :

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Match Name	E-value	Identity	Description
AT2G07696.1	1.4e-71	90.5	Ribosomal protein S7p/S5e fami...	[more]
ATMG01270.1	1.4e-71	90.5	mitochondrial ribosomal protei...	[more]
ATCG01240.1	4.5e-14	31.4	ribosomal protein S7	[more]
ATCG00900.1	4.5e-14	31.4	Ribosomal protein S7p/S5e fami...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000235	Ribosomal protein S5/S7	PIR	PIRSF002122	RPS7p_RPS7a_RPS5e_RPS7o	coord: 9..163 score: 4.4
IPR000235	Ribosomal protein S5/S7	PANTHER	PTHR11205	RIBOSOMAL PROTEIN S7	coord: 10..162 score: 4.0E
IPR005717	Ribosomal protein S7, bacterial/organellar-type	TIGRFAMs	TIGR01029	TIGR01029	coord: 22..162 score: 1.8
IPR020606	Ribosomal protein S7, conserved site	PROSITE	PS00052	RIBOSOMAL_S7	coord: 24..50 scor
IPR023798	Ribosomal protein S7 domain	GENE3D	1.10.455.10		coord: 21..162 score: 2.3
IPR023798	Ribosomal protein S7 domain	PFAM	PF00177	Ribosomal_S7	coord: 23..155 score: 8.8
IPR023798	Ribosomal protein S7 domain	unknown	SSF47973	Ribosomal protein S7	coord: 23..162 score: 3.01
None	No IPR available	PANTHER	PTHR11205:SF23	RIBOSOMAL PROTEIN S7, MITOCHONDRIAL	coord: 10..162 score: 4.0E

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005763	mitochondrial small ribosomal subunit
cellular_component	GO:0000312	plastid small ribosomal subunit
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0019843	rRNA binding