Spo10941.1 (mRNA)

Overview
NameSpo10941.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_05575 : 4135 .. 5917 (-)
Sequence length939
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCACTTGGAGTGGAAACTGATCCCGGAGAACCTTGGATAGTTGATCATATTGACTGGGATCCATTATCTAGTGGTGAAGGTGATTTGCTTTTAGATGATATGGCAAAAGCATTTGCCGAGTCTGCAAAAGTCTCTCAAACCATGAAAGGCGTTGTTTCTTCTTCTATAGTTAATCATATGTAATCACATGGTTTACATGTAAATAACATAGGCTATACAACTCCCAAGGATCTCGAGGTGTCAAAAAAGACAGATAAGCCGGAGAATGAGCCTACTTCTTTGTGGAGCAGTCTATTGGATCAACAGGGGAATAATTTCGAAGATTCTCTGCAGGCAGTCCTTCCCGATTCTTCTGTTGCTTGCTCTAATGTTGAGGATTTCCGAAATTATTCTACAAAACCTCTGCTGGAGGCTAAGAACTCCTATGTACTGGAGACCACAACCTCTATAGCATCGCATGTATTAGAGCCGCCAGATCATGTTAATAATGCTGATATTGTGCAGTTAAGTGATAGTATGAAGGAAATAATCTCTAAGGATTATGGCTTGGATGTAGGCTGTATTGCTATTTCAAGAAAGGAAGTCTTAATGGAATCTGAGGGTCTTAATTGTAACGGTCAGCAAACTGATAAATTGAAGCTAGCTTCTGGTCTTGTGAACAGGATAGACGCTGGGATCCCAACTGAGATGCAATTATGTGATCAGTCAGATTCATCACTTCTTCCTGACATATCCCTGGGTGGAAATCTGCTGGAGCTAAAAGAGGATACAGTAGCCGAAAAAAATGCTAGAAATGTGATGGTTTTGGACTCCTTTTCCGAGGGGAGTAGTAGTGATGGTTTACCAATACTTCGTGACCGGCAATTGCTGGAAGAGGTGGAAGAAATTAAAGAGCAGAAGGGAAATCGCATTGAAGTCAACACTGGCTCCGATAATTTTATAGTTGAGGATACCATGATGTTATTGGATTCACTCCAGCAGGGAAAAAAAGGCAATGATCATTTAGTTGCAAAAAGTACACTATCAGATGAAATGATGGAATGTAGAAAACAAGTAAAAGAGCTTAGTGAAGCTGAGCATCAACCACTTGGTGAAAATAAATCAGGTGATGTATTGATGTTATCTTGTGATGTGTAATTAGTTTATTGTTTCGTTTGGTTTTCTTTTGTATTGTGTATTTCTTTGTAAATAGCTTGACACCTATCAGCATGCATTATATTTTTCATGTAATCCGCCCCAATTAGTTTTTTCTCAGCTGTTAATTTGTTAACGAAGATTAGAAAGATGCATCAATAGTCAATACAGATTATGAAGAAGCAGCATTTTCAAGTTGGAATTAGAGACTCTTATGTTTGTTTTATGTTTCTCATCAGCTAAAGACACTTTGATATCTTTCTGTATTATGTCTGTGTTGACTGTTTTCATGCTGTAAAATGCAGGCAATCATAAGGTGAAGCGATGGGGTACAGGCCAAGTTCTTAGGTTTCCTTTTAAACGATTGTTACAAGTTCAATTTAAGAAGAAAAGGAAAACTTCCATGTACAAGATCCAAAAGAGGTTAGTGTAGGAGATGTTCTAAAATTCTTAAGCGGTGTTGTAGTTGATGTAACGTATAGCAGTGCATACAAATTTATGAGATTCGTAATTACCAGTTATCGTTTATATCATGGACGCTTGCAAGTTGCAACTTACATTTTGTCAAAATTTAATTTATAATACTGAGCTCACATTTCCAAGTCTTAAAACTGCGTTTCTTCTTTTTCTCTGGCCTAGCAGATAA

mRNA sequence

ATGCCACTTGGAGTGGAAACTGATCCCGGAGAACCTTGGATAGTTGATCATATTGACTGGGATCCATTATCTAGTGGTGAAGGCTATACAACTCCCAAGGATCTCGAGGTGTCAAAAAAGACAGATAAGCCGGAGAATGAGCCTACTTCTTTGTGGAGCAGTCTATTGGATCAACAGGGGAATAATTTCGAAGATTCTCTGCAGGCAGTCCTTCCCGATTCTTCTGTTGCTTGCTCTAATGTTGAGGATTTCCGAAATTATTCTACAAAACCTCTGCTGGAGGCTAAGAACTCCTATGTACTGGAGACCACAACCTCTATAGCATCGCATGTATTAGAGCCGCCAGATCATGTTAATAATGCTGATATTGTGCAGATAGACGCTGGGATCCCAACTGAGATGCAATTATGTGATCAGTCAGATTCATCACTTCTTCCTGACATATCCCTGGGTGGAAATCTGCTGGAGCTAAAAGAGGATACAGTAGCCGAAAAAAATGCTAGAAATGTGATGGTTTTGGACTCCTTTTCCGAGGGGAGTAGTAGTGATGGTTTACCAATACTTCGTGACCGGCAATTGCTGGAAGAGGTGGAAGAAATTAAAGAGCAGAAGGGAAATCGCATTGAAGTCAACACTGGCTCCGATAATTTTATAGTTGAGGATACCATGATGTTATTGGATTCACTCCAGCAGGGAAAAAAAGGCAATGATCATTTAGTTGCAAAAAGTACACTATCAGATGAAATGATGGAATGTAGAAAACAAGTAAAAGAGCTTAGTGAAGCTGAGCATCAACCACTTGGTGAAAATAAATCAGGCAATCATAAGGTGAAGCGATGGGGTACAGGCCAAGTTCTTAGGTTTCCTTTTAAACGATTGTTACAAGTTCAATTTAAGAAGAAAAGGAAAACTTCCATGTACAAGATCCAAAAGAGATAA

Coding sequence (CDS)

ATGCCACTTGGAGTGGAAACTGATCCCGGAGAACCTTGGATAGTTGATCATATTGACTGGGATCCATTATCTAGTGGTGAAGGCTATACAACTCCCAAGGATCTCGAGGTGTCAAAAAAGACAGATAAGCCGGAGAATGAGCCTACTTCTTTGTGGAGCAGTCTATTGGATCAACAGGGGAATAATTTCGAAGATTCTCTGCAGGCAGTCCTTCCCGATTCTTCTGTTGCTTGCTCTAATGTTGAGGATTTCCGAAATTATTCTACAAAACCTCTGCTGGAGGCTAAGAACTCCTATGTACTGGAGACCACAACCTCTATAGCATCGCATGTATTAGAGCCGCCAGATCATGTTAATAATGCTGATATTGTGCAGATAGACGCTGGGATCCCAACTGAGATGCAATTATGTGATCAGTCAGATTCATCACTTCTTCCTGACATATCCCTGGGTGGAAATCTGCTGGAGCTAAAAGAGGATACAGTAGCCGAAAAAAATGCTAGAAATGTGATGGTTTTGGACTCCTTTTCCGAGGGGAGTAGTAGTGATGGTTTACCAATACTTCGTGACCGGCAATTGCTGGAAGAGGTGGAAGAAATTAAAGAGCAGAAGGGAAATCGCATTGAAGTCAACACTGGCTCCGATAATTTTATAGTTGAGGATACCATGATGTTATTGGATTCACTCCAGCAGGGAAAAAAAGGCAATGATCATTTAGTTGCAAAAAGTACACTATCAGATGAAATGATGGAATGTAGAAAACAAGTAAAAGAGCTTAGTGAAGCTGAGCATCAACCACTTGGTGAAAATAAATCAGGCAATCATAAGGTGAAGCGATGGGGTACAGGCCAAGTTCTTAGGTTTCCTTTTAAACGATTGTTACAAGTTCAATTTAAGAAGAAAAGGAAAACTTCCATGTACAAGATCCAAAAGAGATAA

Protein sequence

MPLGVETDPGEPWIVDHIDWDPLSSGEGYTTPKDLEVSKKTDKPENEPTSLWSSLLDQQGNNFEDSLQAVLPDSSVACSNVEDFRNYSTKPLLEAKNSYVLETTTSIASHVLEPPDHVNNADIVQIDAGIPTEMQLCDQSDSSLLPDISLGGNLLELKEDTVAEKNARNVMVLDSFSEGSSSDGLPILRDRQLLEEVEEIKEQKGNRIEVNTGSDNFIVEDTMMLLDSLQQGKKGNDHLVAKSTLSDEMMECRKQVKELSEAEHQPLGENKSGNHKVKRWGTGQVLRFPFKRLLQVQFKKKRKTSMYKIQKR
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo10941Spo10941gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo10941.1Spo10941.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo10941.1.CDS.5Spo10941.1.CDS.5CDS
Spo10941.1.CDS.4Spo10941.1.CDS.4CDS
Spo10941.1.CDS.3Spo10941.1.CDS.3CDS
Spo10941.1.CDS.2Spo10941.1.CDS.2CDS
Spo10941.1.CDS.1Spo10941.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo10941.1.exon.5Spo10941.1.exon.5exon
Spo10941.1.exon.4Spo10941.1.exon.4exon
Spo10941.1.exon.3Spo10941.1.exon.3exon
Spo10941.1.exon.2Spo10941.1.exon.2exon
Spo10941.1.exon.1Spo10941.1.exon.1exon


Homology
[Close]
BLAST of Spo10941.1 vs. NCBI nr
Match: gi|902238538|gb|KNA25219.1| (hypothetical protein SOVF_008510, partial [Spinacia oleracea])

HSP 1 Score: 180.6 bits (457), Expect = 4.100e-42
Identity = 96/144 (66.67%), Postives = 97/144 (67.36%), Query Frame = 1 

		  

Query: 1   MPLGVETDPGEPWIVDHIDWDPLSSGEG-------------------------------- 60
           MPLGVETDPGEPWIVDHIDWDPLSSGEG                                
Sbjct: 22  MPLGVETDPGEPWIVDHIDWDPLSSGEGDLLLDDMAKAFAESAKVSQTMKGVVSSPIVNH 81

Query: 61  ------------YTTPKDLEVSKKTDKPENEPTSLWSSLLDQQGNNFEDSLQAVLPDSSV 101
                       Y TPKDLEVSKKTDKPENEPTS WSSLLDQQGNNFEDSLQAVLPDSSV
Sbjct: 82  MQSHGLHVNDIGYKTPKDLEVSKKTDKPENEPTSPWSSLLDQQGNNFEDSLQAVLPDSSV 141
[Close]
BLAST of Spo10941.1 vs. NCBI nr
Match: gi|731349173|ref|XP_010685861.1| (PREDICTED: uncharacterized protein LOC104900192 isoform X1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 156.4 bits (394), Expect = 8.300e-35
Identity = 101/191 (52.88%), Postives = 124/191 (64.92%), Query Frame = 1 

		  

Query: 127 DAGIPTEMQLCDQSDSSLLPDISLGGNLLELKEDTVAEKNA----RNVMVLDSFSEGSSS 186
           +AGI T+ QL D+S  SL PD+SLGGNLLELKED +A++NA     NVM +DSF E + S
Sbjct: 492 NAGISTDKQLSDESGLSLSPDVSLGGNLLELKEDPLADRNAIQHDGNVMDVDSFIEKNGS 551

Query: 187 DGLPILRDRQLLEEVEEIKEQKGNRIEVNTGSDNFIVEDTMMLLDSLQQGKKGNDHLVAK 246
                       EE+ + KEQK +  EV   S   I  DTMML+D L+Q K+ ND   A 
Sbjct: 552 ------------EEMCKKKEQKKDHSEVKIDSKKTIAADTMMLVDPLKQEKQSNDLSAAT 611

Query: 247 STLSDEMM-ECRKQVKELSEAEHQPLGENKSGNHKVKRWGTGQVLRFPFKRLLQVQFKKK 306
           STLSD+ + E R QV E+ EA H  LGEN+ GN KVK     Q+LRFPFKRLLQV FKKK
Sbjct: 612 STLSDDKITERRIQVTEIGEAGHLSLGENELGNLKVKWQHKSQILRFPFKRLLQVPFKKK 670

Query: 307 RKTSMYKIQKR 313
            ++SMYK +KR
Sbjct: 672 GRSSMYKTKKR 670
[Close]
BLAST of Spo10941.1 vs. NCBI nr
Match: gi|731349179|ref|XP_010685864.1| (PREDICTED: uncharacterized protein LOC104900192 isoform X2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 156.4 bits (394), Expect = 8.300e-35
Identity = 101/191 (52.88%), Postives = 124/191 (64.92%), Query Frame = 1 

		  

Query: 127 DAGIPTEMQLCDQSDSSLLPDISLGGNLLELKEDTVAEKNA----RNVMVLDSFSEGSSS 186
           +AGI T+ QL D+S  SL PD+SLGGNLLELKED +A++NA     NVM +DSF E + S
Sbjct: 492 NAGISTDKQLSDESGLSLSPDVSLGGNLLELKEDPLADRNAIQHDGNVMDVDSFIEKNGS 551

Query: 187 DGLPILRDRQLLEEVEEIKEQKGNRIEVNTGSDNFIVEDTMMLLDSLQQGKKGNDHLVAK 246
                       EE+ + KEQK +  EV   S   I  DTMML+D L+Q K+ ND   A 
Sbjct: 552 ------------EEMCKKKEQKKDHSEVKIDSKKTIAADTMMLVDPLKQEKQSNDLSAAT 611

Query: 247 STLSDEMM-ECRKQVKELSEAEHQPLGENKSGNHKVKRWGTGQVLRFPFKRLLQVQFKKK 306
           STLSD+ + E R QV E+ EA H  LGEN+ GN KVK     Q+LRFPFKRLLQV FKKK
Sbjct: 612 STLSDDKITERRIQVTEIGEAGHLSLGENELGNLKVKWQHKSQILRFPFKRLLQVPFKKK 670

Query: 307 RKTSMYKIQKR 313
            ++SMYK +KR
Sbjct: 672 GRSSMYKTKKR 670
[Close]
BLAST of Spo10941.1 vs. UniProtKB/TrEMBL
Match: A0A0K9S1Z3_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_008510 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 2.900e-42
Identity = 96/144 (66.67%), Postives = 97/144 (67.36%), Query Frame = 1 

		  

Query: 1   MPLGVETDPGEPWIVDHIDWDPLSSGEG-------------------------------- 60
           MPLGVETDPGEPWIVDHIDWDPLSSGEG                                
Sbjct: 22  MPLGVETDPGEPWIVDHIDWDPLSSGEGDLLLDDMAKAFAESAKVSQTMKGVVSSPIVNH 81

Query: 61  ------------YTTPKDLEVSKKTDKPENEPTSLWSSLLDQQGNNFEDSLQAVLPDSSV 101
                       Y TPKDLEVSKKTDKPENEPTS WSSLLDQQGNNFEDSLQAVLPDSSV
Sbjct: 82  MQSHGLHVNDIGYKTPKDLEVSKKTDKPENEPTSPWSSLLDQQGNNFEDSLQAVLPDSSV 141
[Close]
BLAST of Spo10941.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BW39_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g174800 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 5.800e-35
Identity = 101/191 (52.88%), Postives = 124/191 (64.92%), Query Frame = 1 

		  

Query: 127 DAGIPTEMQLCDQSDSSLLPDISLGGNLLELKEDTVAEKNA----RNVMVLDSFSEGSSS 186
           +AGI T+ QL D+S  SL PD+SLGGNLLELKED +A++NA     NVM +DSF E + S
Sbjct: 492 NAGISTDKQLSDESGLSLSPDVSLGGNLLELKEDPLADRNAIQHDGNVMDVDSFIEKNGS 551

Query: 187 DGLPILRDRQLLEEVEEIKEQKGNRIEVNTGSDNFIVEDTMMLLDSLQQGKKGNDHLVAK 246
                       EE+ + KEQK +  EV   S   I  DTMML+D L+Q K+ ND   A 
Sbjct: 552 ------------EEMCKKKEQKKDHSEVKIDSKKTIAADTMMLVDPLKQEKQSNDLSAAT 611

Query: 247 STLSDEMM-ECRKQVKELSEAEHQPLGENKSGNHKVKRWGTGQVLRFPFKRLLQVQFKKK 306
           STLSD+ + E R QV E+ EA H  LGEN+ GN KVK     Q+LRFPFKRLLQV FKKK
Sbjct: 612 STLSDDKITERRIQVTEIGEAGHLSLGENELGNLKVKWQHKSQILRFPFKRLLQVPFKKK 670

Query: 307 RKTSMYKIQKR 313
            ++SMYK +KR
Sbjct: 672 GRSSMYKTKKR 670
[Close]
BLAST of Spo10941.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BZH4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g174800 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 5.800e-35
Identity = 101/191 (52.88%), Postives = 124/191 (64.92%), Query Frame = 1 

		  

Query: 127 DAGIPTEMQLCDQSDSSLLPDISLGGNLLELKEDTVAEKNA----RNVMVLDSFSEGSSS 186
           +AGI T+ QL D+S  SL PD+SLGGNLLELKED +A++NA     NVM +DSF E + S
Sbjct: 492 NAGISTDKQLSDESGLSLSPDVSLGGNLLELKEDPLADRNAIQHDGNVMDVDSFIEKNGS 551

Query: 187 DGLPILRDRQLLEEVEEIKEQKGNRIEVNTGSDNFIVEDTMMLLDSLQQGKKGNDHLVAK 246
                       EE+ + KEQK +  EV   S   I  DTMML+D L+Q K+ ND   A 
Sbjct: 552 ------------EEMCKKKEQKKDHSEVKIDSKKTIAADTMMLVDPLKQEKQSNDLSAAT 611

Query: 247 STLSDEMM-ECRKQVKELSEAEHQPLGENKSGNHKVKRWGTGQVLRFPFKRLLQVQFKKK 306
           STLSD+ + E R QV E+ EA H  LGEN+ GN KVK     Q+LRFPFKRLLQV FKKK
Sbjct: 612 STLSDDKITERRIQVTEIGEAGHLSLGENELGNLKVKWQHKSQILRFPFKRLLQVPFKKK 670

Query: 307 RKTSMYKIQKR 313
            ++SMYK +KR
Sbjct: 672 GRSSMYKTKKR 670
The following BLAST results are available for this feature:
BLAST of Spo10941.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 3
Match NameE-valueIdentityDescription
gi|902238538|gb|KNA25219.1|4.1e-4266.6hypothetical protein SOVF_0085... [more]
gi|731349173|ref|XP_010685861.1|8.3e-3552.8PREDICTED: uncharacterized pro... [more]
gi|731349179|ref|XP_010685864.1|8.3e-3552.8PREDICTED: uncharacterized pro... [more]
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BLAST of Spo10941.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 3
Match NameE-valueIdentityDescription
A0A0K9S1Z3_SPIOL2.9e-4266.6Uncharacterized protein (Fragm... [more]
A0A0J8BW39_BETVU5.8e-3552.8Uncharacterized protein OS=Bet... [more]
A0A0J8BZH4_BETVU5.8e-3552.8Uncharacterized protein OS=Bet... [more]
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BLAST of Spo10941.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo10941.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 242..262
scor