Spo18370.1 (mRNA) | SpinachBase

Overview


Name	Spo18370.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	40S ribosomal protein S10-1
Location	SpoScf_07949 : 335 .. 1775 (+)
Sequence length	478

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCCTGCTGGCAGGCCAATGGGCGGCGCACCTGGCCCACGGTAATGGCTTGCTCTTTTTTTTTTATAGTCAAAATGGTTAAGGTTGTCATAATTGTGATTTCCCTTATGATGGTAAACACAAGTTTAATACGGAGTACAAACTTATCTTATTAGTGGCGCTCTGCTGATATTGTTGTTTTTTCAAATTGGATGTCAGCTTTCTAACTTGGTTGTTATGTTGTTGAATTTTTTACCAGTGGGGGATCGCGATTTGAAGGAGACAGGCCTAGATTTGGTGATAGGGATGGCTACCGTTCTGGACCTCGTGGTGAAGGTGATTCCGGTGACAAGGGCGGTGCTCCTGCTGATTACAGACCATCATTTGGGGTAAGTGTGAAACGTTGATAGTGCTAATTGAGTTTCTTGGGTAGCTTCTGTTTTTTAATAGTCCTAATTGCACTTGGATAGTACTCCGTATTAACTATTAAGACCCTAATATTTATTTTCTTTGATGATCTGAATTTTTATTACAATGTTGTTACGTTACATTCCGGTGATTCAGTGAAGCGAGCTATACCTAGTTATCTACTGAATGATATGCTGTACTACCTTCTGTAACTTAAAACGATGGAACTGATCACATTTGTGAAGAAGATATATGCAATAGAGTGGAATCCTACGTGTCATGATTGTTGCCATTACTTTGGCGTTGTTGAATATCAGTGATGTGTAGAATTTGGATATAAATAATTCTACAATATTCTATGAACCTATTCAAGGGTTATGGATATGAGATTAGATCCTAGGCCCAGTTCAGCTGCTGAGATAGCTTTGTCCAGAATACCGGTACTTAGAAGACTTAGTTGATAATTCTATTTGGATCTGAATTTCCTCTATATAGTAGCATAGTGTTTGCGTGAAAGGTAAATTAATCTGTATGAATACAATGCTATATATTTCCCTTGTCACCTCCTGAAGGATGTGTAAACATGTGGATCATGGATAGAACCAGTATTAGATGGCTGATTTTATATTGCCTAAAACAGGGCTTACTCTTTGTCTGTGGTCGTATAAGGTGTGAGTTTGTGATTGTCTCCCCTCTCCCCATTGTACCAGATTCGTGTTTGATGATACATATTTTATTATTTCACAGGGTTCTTCTAGTGGTAGGCCAGGCTTTGGTCGTGGAGCTGGAAGCTTTGGTGCTGGACCAACAAGTTCAATTCTTTCTTGAAACCATAAACTTCTATGAATAGGACTATTCCAATTTTGAATGTCATGACTGTTTTTGATTGAGTTGAAGAGAAATACAATACAATGTTTTGCAAGAGGCTTCCTTAGACTAACTACATGTACTTTGACTTCTTTAATTTAGTTTTTTTTCCCTTTGGTTGGTAGATGATGTGAATACTCAAGTGATCATCTGCTTGGCCACCATTTTCAGATTTTGTTTATTG

mRNA sequence

ATGAAGCCTGCTGGCAGGCCAATGGGCGGCGCACCTGGCCCACGTGGGGGATCGCGATTTGAAGGAGACAGGCCTAGATTTGGTGATAGGGATGGCTACCGTTCTGGACCTCGTGGTGAAGGTGATTCCGGTGACAAGGGCGGTGCTCCTGCTGATTACAGACCATCATTTGGGGGTTCTTCTAGTGGTAGGCCAGGCTTTGGTCGTGGAGCTGGAAGCTTTGGTGCTGGACCAACAAGTTCAATTCTTTCTTGAAACCATAAACTTCTATGAATAGGACTATTCCAATTTTGAATGTCATGACTGTTTTTGATTGAGTTGAAGAGAAATACAATACAATGTTTTGCAAGAGGCTTCCTTAGACTAACTACATGTACTTTGACTTCTTTAATTTAGTTTTTTTTCCCTTTGGTTGGTAGATGATGTGAATACTCAAGTGATCATCTGCTTGGCCACCATTTTCAGATTTTGTTTATTG

Coding sequence (CDS)

ATGAAGCCTGCTGGCAGGCCAATGGGCGGCGCACCTGGCCCACGTGGGGGATCGCGATTTGAAGGAGACAGGCCTAGATTTGGTGATAGGGATGGCTACCGTTCTGGACCTCGTGGTGAAGGTGATTCCGGTGACAAGGGCGGTGCTCCTGCTGATTACAGACCATCATTTGGGGGTTCTTCTAGTGGTAGGCCAGGCTTTGGTCGTGGAGCTGGAAGCTTTGGTGCTGGACCAACAAGTTCAATTCTTTCTTGA

Protein sequence

MKPAGRPMGGAPGPRGGSRFEGDRPRFGDRDGYRSGPRGEGDSGDKGGAPADYRPSFGGSSSGRPGFGRGAGSFGAGPTSSILS

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo18370	Spo18370	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo18370.1	Spo18370.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo18370.1.exon.1	Spo18370.1.exon.1	exon
Spo18370.1.exon.2	Spo18370.1.exon.2	exon
Spo18370.1.exon.3	Spo18370.1.exon.3	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo18370.1.CDS.1	Spo18370.1.CDS.1	CDS
Spo18370.1.CDS.2	Spo18370.1.CDS.2	CDS
Spo18370.1.CDS.3	Spo18370.1.CDS.3	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo18370.1.utr3p.1	Spo18370.1.utr3p.1	three_prime_UTR

Homology

[Close]

BLAST of Spo18370.1 vs. NCBI nr
Match: gi|902233007|gb|KNA22894.1| (hypothetical protein SOVF_029460 [Spinacia oleracea])

HSP 1 Score: 155.2 bits (391), Expect = 5.000e-35
Identity = 82/84 (97.62%), Postives = 82/84 (97.62%), Query Frame = 1


		  
Query: 1   MKPAGRPMGGAPGPRGGSRFEGDRPRFGDRDGYRSGPRGEGDSGDKGGAPADYRPSFGGS 60
           MKPAGRPMGGAPGPRGGSRFEGDRPRFGDRDGYRSGPRGEGDSGDKGGAPADYRPSFGGS
Sbjct: 95  MKPAGRPMGGAPGPRGGSRFEGDRPRFGDRDGYRSGPRGEGDSGDKGGAPADYRPSFGGS 154

Query: 61  SSGRPGFGRGAGSFGAGPTSSILS 85
           SSGR GFGRGAGSFGAGPTSS LS
Sbjct: 155 SSGRSGFGRGAGSFGAGPTSSNLS 178

[Close]

BLAST of Spo18370.1 vs. NCBI nr
Match: gi|731330985|ref|XP_010676422.1| (PREDICTED: 40S ribosomal protein S10-1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 132.9 bits (333), Expect = 2.600e-28
Identity = 74/83 (89.16%), Postives = 76/83 (91.57%), Query Frame = 1


		  
Query: 1   MKPAGRPMGGAPGPRGGSRFEGDRPRFGDRDGYRSGPRGEGDSGDKGGAPADYRPSFGGS 60
           MKPAGRPMGG PG RGGSRFEGDRPRFGDR+GYR+GPR  GD GDKGGAPADYRPSFGG 
Sbjct: 95  MKPAGRPMGGPPG-RGGSRFEGDRPRFGDREGYRAGPRASGDYGDKGGAPADYRPSFGG- 154

Query: 61  SSGRPGFGRGAGSFGAGPTSSIL 84
           SSGRPGFGRGAGSFGAGPTSS L
Sbjct: 155 SSGRPGFGRGAGSFGAGPTSSDL 175

[Close]

BLAST of Spo18370.1 vs. NCBI nr
Match: gi|702337228|ref|XP_010055689.1| (PREDICTED: 40S ribosomal protein S10-like [Eucalyptus grandis])

HSP 1 Score: 106.7 bits (265), Expect = 2.000e-20
Identity = 65/86 (75.58%), Postives = 66/86 (76.74%), Query Frame = 1


		  
Query: 2   KPAGRPMGGAPG---PRGGSRFEGDRPRFGDRDGYRSGPRGE-GDSGDKGGAPADYRPSF 61
           KPAGRPMGG P    PRG  RFEG   RFGDR+GYRSGPRG  GD GDKGGAPADYRPSF
Sbjct: 96  KPAGRPMGGGPPGDRPRGPPRFEGGERRFGDREGYRSGPRGPGGDFGDKGGAPADYRPSF 155

Query: 62  GGSSSGRPGFGRGAGSFGAGPTSSIL 84
           GG   GRPGFGRG G FGAGP SS L
Sbjct: 156 GG-PGGRPGFGRGGGGFGAGPASSNL 180

[Close]

BLAST of Spo18370.1 vs. NCBI nr
Match: gi|223549752|gb|EEF51240.1| (40S ribosomal protein S10, putative [Ricinus communis])

HSP 1 Score: 106.3 bits (264), Expect = 2.600e-20
Identity = 64/85 (75.29%), Postives = 69/85 (81.18%), Query Frame = 1


		  
Query: 2   KPAGRPMGGAPG--PRGGSRFEGDRPRFGDRDGYRSGPRGE-GDSGDKGGAPADYRPSFG 61
           KP GRPMGG PG  PRG SRF+G+R   GDRDGYR GPRG  G+ GDKGGAPADYRP++G
Sbjct: 96  KPLGRPMGGPPGDRPRGPSRFDGERRFGGDRDGYRGGPRGPPGEFGDKGGAPADYRPTYG 155

Query: 62  GSSSGRPGFGRGAGSFGAGPTSSIL 84
           GS  GRPGFGRGAGSFGAGP SS L
Sbjct: 156 GSG-GRPGFGRGAGSFGAGPASSNL 179

[Close]

BLAST of Spo18370.1 vs. NCBI nr
Match: gi|1000983215|ref|XP_002509853.2| (PREDICTED: uncharacterized protein LOC8287428 [Ricinus communis])

HSP 1 Score: 106.3 bits (264), Expect = 2.600e-20
Identity = 64/85 (75.29%), Postives = 69/85 (81.18%), Query Frame = 1


		  
Query: 2   KPAGRPMGGAPG--PRGGSRFEGDRPRFGDRDGYRSGPRGE-GDSGDKGGAPADYRPSFG 61
           KP GRPMGG PG  PRG SRF+G+R   GDRDGYR GPRG  G+ GDKGGAPADYRP++G
Sbjct: 479 KPLGRPMGGPPGDRPRGPSRFDGERRFGGDRDGYRGGPRGPPGEFGDKGGAPADYRPTYG 538

Query: 62  GSSSGRPGFGRGAGSFGAGPTSSIL 84
           GS  GRPGFGRGAGSFGAGP SS L
Sbjct: 539 GSG-GRPGFGRGAGSFGAGPASSNL 562

[Close]

BLAST of Spo18370.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RVF2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_029460 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 3.500e-35
Identity = 82/84 (97.62%), Postives = 82/84 (97.62%), Query Frame = 1


		  
Query: 1   MKPAGRPMGGAPGPRGGSRFEGDRPRFGDRDGYRSGPRGEGDSGDKGGAPADYRPSFGGS 60
           MKPAGRPMGGAPGPRGGSRFEGDRPRFGDRDGYRSGPRGEGDSGDKGGAPADYRPSFGGS
Sbjct: 95  MKPAGRPMGGAPGPRGGSRFEGDRPRFGDRDGYRSGPRGEGDSGDKGGAPADYRPSFGGS 154

Query: 61  SSGRPGFGRGAGSFGAGPTSSILS 85
           SSGR GFGRGAGSFGAGPTSS LS
Sbjct: 155 SSGRSGFGRGAGSFGAGPTSSNLS 178

[Close]

BLAST of Spo18370.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CIX8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g099980 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 1.800e-28
Identity = 74/83 (89.16%), Postives = 76/83 (91.57%), Query Frame = 1


		  
Query: 1   MKPAGRPMGGAPGPRGGSRFEGDRPRFGDRDGYRSGPRGEGDSGDKGGAPADYRPSFGGS 60
           MKPAGRPMGG PG RGGSRFEGDRPRFGDR+GYR+GPR  GD GDKGGAPADYRPSFGG 
Sbjct: 95  MKPAGRPMGGPPG-RGGSRFEGDRPRFGDREGYRAGPRASGDYGDKGGAPADYRPSFGG- 154

Query: 61  SSGRPGFGRGAGSFGAGPTSSIL 84
           SSGRPGFGRGAGSFGAGPTSS L
Sbjct: 155 SSGRPGFGRGAGSFGAGPTSSDL 175

[Close]

BLAST of Spo18370.1 vs. UniProtKB/TrEMBL
Match: A0A059C1U1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E00655 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.400e-20
Identity = 65/86 (75.58%), Postives = 66/86 (76.74%), Query Frame = 1


		  
Query: 2   KPAGRPMGGAPG---PRGGSRFEGDRPRFGDRDGYRSGPRGE-GDSGDKGGAPADYRPSF 61
           KPAGRPMGG P    PRG  RFEG   RFGDR+GYRSGPRG  GD GDKGGAPADYRPSF
Sbjct: 96  KPAGRPMGGGPPGDRPRGPPRFEGGERRFGDREGYRSGPRGPGGDFGDKGGAPADYRPSF 155

Query: 62  GGSSSGRPGFGRGAGSFGAGPTSSIL 84
           GG   GRPGFGRG G FGAGP SS L
Sbjct: 156 GG-PGGRPGFGRGGGGFGAGPASSNL 180

[Close]

BLAST of Spo18370.1 vs. UniProtKB/TrEMBL
Match: B9RCG9_RICCO (40S ribosomal protein S10, putative OS=Ricinus communis GN=RCOM_1688110 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.800e-20
Identity = 64/85 (75.29%), Postives = 69/85 (81.18%), Query Frame = 1


		  
Query: 2   KPAGRPMGGAPG--PRGGSRFEGDRPRFGDRDGYRSGPRGE-GDSGDKGGAPADYRPSFG 61
           KP GRPMGG PG  PRG SRF+G+R   GDRDGYR GPRG  G+ GDKGGAPADYRP++G
Sbjct: 96  KPLGRPMGGPPGDRPRGPSRFDGERRFGGDRDGYRGGPRGPPGEFGDKGGAPADYRPTYG 155

Query: 62  GSSSGRPGFGRGAGSFGAGPTSSIL 84
           GS  GRPGFGRGAGSFGAGP SS L
Sbjct: 156 GSG-GRPGFGRGAGSFGAGPASSNL 179

[Close]

BLAST of Spo18370.1 vs. UniProtKB/TrEMBL
Match: A0A067K0R0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20545 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.400e-20
Identity = 64/86 (74.42%), Postives = 69/86 (80.23%), Query Frame = 1


		  
Query: 2   KPAGRPMGGAPG--PRGGSRFEGDRPRFGDRDGYRSGPRGEG-DSGDKGGAPADYRPSFG 61
           KP GRPMGG PG  PRG SRF+G+R   GDRDGYR GPRG G + GDKGGAPADYRP++G
Sbjct: 96  KPLGRPMGGPPGDRPRGPSRFDGERRFGGDRDGYRGGPRGPGGEFGDKGGAPADYRPTYG 155

Query: 62  GSSSGRPGFGRGAGSFGAGPTSSILS 85
           GS  GRPGFGRGAG FGAGP SS LS
Sbjct: 156 GSG-GRPGFGRGAGGFGAGPASSNLS 180

[Close]

BLAST of Spo18370.1 vs. ExPASy Swiss-Prot
Match: RS10B_ORYSJ (40S ribosomal protein S10-2 OS=Oryza sativa subsp. japonica GN=RPS10-2 PE=2 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.900e-18
Identity = 62/86 (72.09%), Postives = 67/86 (77.91%), Query Frame = 1


		  
Query: 2   KPAGRPMG-GAPG--PRGGSRFEGDRPRFGDRDGYRSGPRG-EGD-SGDKGGAPADYRPS 61
           +P GRP G G PG  PRG  RFEGDRPRFGDRDGYR GPRG  GD  G+KGGAPA+++PS
Sbjct: 96  RPPGRPFGSGPPGDRPRGPPRFEGDRPRFGDRDGYRGGPRGAPGDFGGEKGGAPAEFQPS 155

Query: 62  FGGSSSGRPGFGR-GAGSFGAGPTSS 82
           F  SS GRPGFGR G G FGAGPTSS
Sbjct: 156 F-RSSGGRPGFGRGGGGGFGAGPTSS 180

[Close]

BLAST of Spo18370.1 vs. ExPASy Swiss-Prot
Match: RS10A_ORYSJ (40S ribosomal protein S10-1 OS=Oryza sativa subsp. japonica GN=RPS10-1 PE=2 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.900e-18
Identity = 62/86 (72.09%), Postives = 67/86 (77.91%), Query Frame = 1


		  
Query: 2   KPAGRPMG-GAPG--PRGGSRFEGDRPRFGDRDGYRSGPRG-EGD-SGDKGGAPADYRPS 61
           +P GRP G G PG  PRG  RFEGDRPRFGDRDGYR GPRG  GD  G+KGGAPA+++PS
Sbjct: 96  RPPGRPFGSGPPGDRPRGPPRFEGDRPRFGDRDGYRGGPRGAPGDFGGEKGGAPAEFQPS 155

Query: 62  FGGSSSGRPGFGR-GAGSFGAGPTSS 82
           F  SS GRPGFGR G G FGAGPTSS
Sbjct: 156 F-RSSGGRPGFGRGGGGGFGAGPTSS 180

[Close]

BLAST of Spo18370.1 vs. ExPASy Swiss-Prot
Match: RS101_ARATH (40S ribosomal protein S10-1 OS=Arabidopsis thaliana GN=RPS10A PE=2 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 8.800e-16
Identity = 54/81 (66.67%), Postives = 59/81 (72.84%), Query Frame = 1


		  
Query: 2   KPAGRPMGGAPGPR--GGSRFEGDRPRFGDRDGYRSGPRGEGDSGDKGGAPADYRPSFGG 61
           KP GRP GG PG R  G  R +GDRPRFGDRDGYR GPRG GD  +KGGAPAD++PSF G
Sbjct: 96  KPGGRPFGGPPGDRQRGPPRSDGDRPRFGDRDGYRGGPRG-GD--EKGGAPADFQPSFQG 155

Query: 62  SSSGRPGFGRGAGSFGAGPTS 81
              GRPGFGRGAG + A   S
Sbjct: 156 -GGGRPGFGRGAGGYSAAAPS 172

[Close]

BLAST of Spo18370.1 vs. ExPASy Swiss-Prot
Match: RS103_ARATH (40S ribosomal protein S10-3 OS=Arabidopsis thaliana GN=RPS10C PE=2 SV=2)

HSP 1 Score: 80.1 bits (196), Expect = 1.300e-14
Identity = 55/82 (67.07%), Postives = 60/82 (73.17%), Query Frame = 1


		  
Query: 2   KPAGRPMGGAPGPRG-GSRFE-GDRPRFGDRDGYRSGPRGEGD-SGDKGGAPADYRPSFG 61
           KP GRP GG PG R  G R E GDRPRFGDRDGYR+GPR  G+  G+KGGAPADY+PSF 
Sbjct: 96  KPGGRPFGGPPGDRSRGPRHEGGDRPRFGDRDGYRAGPRAGGEFGGEKGGAPADYQPSFQ 155

Query: 62  GSSSGRPGFGRGAGSFGAGPTS 81
           G  SGR GFGRGAG + A   S
Sbjct: 156 G--SGR-GFGRGAGGYSAAAPS 174

[Close]

BLAST of Spo18370.1 vs. ExPASy Swiss-Prot
Match: RS102_ARATH (40S ribosomal protein S10-2 OS=Arabidopsis thaliana GN=RPS10B PE=2 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.200e-14
Identity = 51/84 (60.71%), Postives = 57/84 (67.86%), Query Frame = 1


		  
Query: 2   KPAGRPMGGAPG-PRGGSRFEGDRPRFGDRDGYRSGPRGEGDSGDKGGAPADYRPSF-GG 61
           KP GRP GG    PRG  R +G+R RFGDRDGYR GP+  G+ GDK GAPADY+P F GG
Sbjct: 97  KPLGRPFGGGGDRPRGPPRGDGER-RFGDRDGYRGGPKSGGEYGDKAGAPADYQPGFRGG 156

Query: 62  SSSGRPGFGRGAGSFGAGPTSSIL 84
           +   R GFGRGAG FG G   S L
Sbjct: 157 AGGARQGFGRGAGGFGGGAAGSDL 179

[Close]

BLAST of Spo18370.1 vs. TAIR (Arabidopsis)
Match: AT4G25740.1 (RNA binding Plectin/S10 domain-containing protein)

HSP 1 Score: 84.0 bits (206), Expect = 5.000e-17
Identity = 54/81 (66.67%), Postives = 59/81 (72.84%), Query Frame = 1


		  
Query: 2   KPAGRPMGGAPGPR--GGSRFEGDRPRFGDRDGYRSGPRGEGDSGDKGGAPADYRPSFGG 61
           KP GRP GG PG R  G  R +GDRPRFGDRDGYR GPRG GD  +KGGAPAD++PSF G
Sbjct: 96  KPGGRPFGGPPGDRQRGPPRSDGDRPRFGDRDGYRGGPRG-GD--EKGGAPADFQPSFQG 155

Query: 62  SSSGRPGFGRGAGSFGAGPTS 81
              GRPGFGRGAG + A   S
Sbjct: 156 -GGGRPGFGRGAGGYSAAAPS 172

[Close]

BLAST of Spo18370.1 vs. TAIR (Arabidopsis)
Match: AT5G52650.1 (RNA binding Plectin/S10 domain-containing protein)

HSP 1 Score: 80.1 bits (196), Expect = 7.200e-16
Identity = 55/82 (67.07%), Postives = 60/82 (73.17%), Query Frame = 1


		  
Query: 2   KPAGRPMGGAPGPRG-GSRFE-GDRPRFGDRDGYRSGPRGEGD-SGDKGGAPADYRPSFG 61
           KP GRP GG PG R  G R E GDRPRFGDRDGYR+GPR  G+  G+KGGAPADY+PSF 
Sbjct: 96  KPGGRPFGGPPGDRSRGPRHEGGDRPRFGDRDGYRAGPRAGGEFGGEKGGAPADYQPSFQ 155

Query: 62  GSSSGRPGFGRGAGSFGAGPTS 81
           G  SGR GFGRGAG + A   S
Sbjct: 156 G--SGR-GFGRGAGGYSAAAPS 174

[Close]

BLAST of Spo18370.1 vs. TAIR (Arabidopsis)
Match: AT5G41520.1 (RNA binding Plectin/S10 domain-containing protein)

HSP 1 Score: 79.3 bits (194), Expect = 1.200e-15
Identity = 51/84 (60.71%), Postives = 57/84 (67.86%), Query Frame = 1


		  
Query: 2   KPAGRPMGGAPG-PRGGSRFEGDRPRFGDRDGYRSGPRGEGDSGDKGGAPADYRPSF-GG 61
           KP GRP GG    PRG  R +G+R RFGDRDGYR GP+  G+ GDK GAPADY+P F GG
Sbjct: 97  KPLGRPFGGGGDRPRGPPRGDGER-RFGDRDGYRGGPKSGGEYGDKAGAPADYQPGFRGG 156

Query: 62  SSSGRPGFGRGAGSFGAGPTSSIL 84
           +   R GFGRGAG FG G   S L
Sbjct: 157 AGGARQGFGRGAGGFGGGAAGSDL 179

The following BLAST results are available for this feature:

BLAST of Spo18370.1 vs. NCBI nr
BLAST of Spo18370.1 vs. UniProtKB/TrEMBL
BLAST of Spo18370.1 vs. ExPASy Swiss-Prot
BLAST of Spo18370.1 vs. TAIR (Arabidopsis)

BLAST of Spo18370.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902233007\|gb\|KNA22894.1\|	5.0e-35	97.6	hypothetical protein SOVF_0294...	[more]
gi\|731330985\|ref\|XP_010676422.1\|	2.6e-28	89.1	PREDICTED: 40S ribosomal prote...	[more]
gi\|702337228\|ref\|XP_010055689.1\|	2.0e-20	75.5	PREDICTED: 40S ribosomal prote...	[more]
gi\|223549752\|gb\|EEF51240.1\|	2.6e-20	75.2	40S ribosomal protein S10, put...	[more]
gi\|1000983215\|ref\|XP_002509853.2\|	2.6e-20	75.2	PREDICTED: uncharacterized pro...	[more]

BLAST of Spo18370.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9RVF2_SPIOL	3.5e-35	97.6	Uncharacterized protein OS=Spi...	[more]
A0A0J8CIX8_BETVU	1.8e-28	89.1	Uncharacterized protein OS=Bet...	[more]
A0A059C1U1_EUCGR	1.4e-20	75.5	Uncharacterized protein OS=Euc...	[more]
B9RCG9_RICCO	1.8e-20	75.2	40S ribosomal protein S10, put...	[more]
A0A067K0R0_JATCU	2.4e-20	74.4	Uncharacterized protein OS=Jat...	[more]

BLAST of Spo18370.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
RS10B_ORYSJ	1.9e-18	72.0	40S ribosomal protein S10-2 OS...	[more]
RS10A_ORYSJ	1.9e-18	72.0	40S ribosomal protein S10-1 OS...	[more]
RS101_ARATH	8.8e-16	66.6	40S ribosomal protein S10-1 OS...	[more]
RS103_ARATH	1.3e-14	67.0	40S ribosomal protein S10-3 OS...	[more]
RS102_ARATH	2.2e-14	60.7	40S ribosomal protein S10-2 OS...	[more]

BLAST of Spo18370.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3


Match Name	E-value	Identity	Description
AT4G25740.1	5.0e-17	66.6	RNA binding Plectin/S10 domain...	[more]
AT5G52650.1	7.2e-16	67.0	RNA binding Plectin/S10 domain...	[more]
AT5G41520.1	1.2e-15	60.7	RNA binding Plectin/S10 domain...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR12146	40S RIBOSOMAL PROTEIN S10	coord: 2..82 score: 2.2
None	No IPR available	PANTHER	PTHR12146:SF7	SUBFAMILY NOT NAMED	coord: 2..82 score: 2.2

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005840	ribosome