Spo26126.1 (mRNA)

Overview
NameSpo26126.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionPhotosystem I P700 chlorophyll a apoprotein A2 (1.97.1.12) (PSI-B) (PsaB)
LocationSpoScf_16137 : 72 .. 440 (-)
Sequence length369
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATTAAGATTTCCAAGGTTTAGCCAAGGCTTAGCTCAGGACCCCACTACTCGTCGTATTTGGTTTGGTATTGCTACCGCACATGACTTCGAGAGTCATGATGATATTACTGAAGAACGTCTTTATCAGAATATTTTTGCTTCTCACTTTGGGCAATTTGCAATCATTTTTCTGTGGACTTCCGGAAATCTGTTTCATGTAGCTTGGCAAGGAAATTTTGAGTCATGGGTACAGGACCCTTTACACGTAAGACCTATTGCTCATGCAATTTGGGATCCTCATTTTGGTCAACCTGCTGTAGAAGCTTTTACTCGGGGAGGTGCTCTTGGCCCAGTGAATATCGCTTATTCTGGTGTTTATCAGTGG

mRNA sequence

ATGGCATTAAGATTTCCAAGGTTTAGCCAAGGCTTAGCTCAGGACCCCACTACTCGTCGTATTTGGTTTGGTATTGCTACCGCACATGACTTCGAGAGTCATGATGATATTACTGAAGAACGTCTTTATCAGAATATTTTTGCTTCTCACTTTGGGCAATTTGCAATCATTTTTCTGTGGACTTCCGGAAATCTGTTTCATGTAGCTTGGCAAGGAAATTTTGAGTCATGGGTACAGGACCCTTTACACGTAAGACCTATTGCTCATGCAATTTGGGATCCTCATTTTGGTCAACCTGCTGTAGAAGCTTTTACTCGGGGAGGTGCTCTTGGCCCAGTGAATATCGCTTATTCTGGTGTTTATCAGTGG

Coding sequence (CDS)

ATGGCATTAAGATTTCCAAGGTTTAGCCAAGGCTTAGCTCAGGACCCCACTACTCGTCGTATTTGGTTTGGTATTGCTACCGCACATGACTTCGAGAGTCATGATGATATTACTGAAGAACGTCTTTATCAGAATATTTTTGCTTCTCACTTTGGGCAATTTGCAATCATTTTTCTGTGGACTTCCGGAAATCTGTTTCATGTAGCTTGGCAAGGAAATTTTGAGTCATGGGTACAGGACCCTTTACACGTAAGACCTATTGCTCATGCAATTTGGGATCCTCATTTTGGTCAACCTGCTGTAGAAGCTTTTACTCGGGGAGGTGCTCTTGGCCCAGTGAATATCGCTTATTCTGGTGTTTATCAGTGG

Protein sequence

MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQFAIIFLWTSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGVYQW
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo26126Spo26126gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo26126.1Spo26126.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo26126.1.CDS.1Spo26126.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo26126.1.exon.1Spo26126.1.exon.1exon


Homology
[Close]
BLAST of Spo26126.1 vs. NCBI nr
Match: gi|1002165408|ref|YP_009235539.1| (PsaB (chloroplast) [Cynanchum wilfordii])

HSP 1 Score: 268.9 bits (686), Expect = 4.500e-69
Identity = 122/123 (99.19%), Postives = 122/123 (99.19%), Query Frame = 1 

		  

Query: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQFAIIFLW 60
           MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQ AIIFLW
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 60

Query: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120
           TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV
Sbjct: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120

Query: 121 YQW 124
           YQW
Sbjct: 121 YQW 123
[Close]
BLAST of Spo26126.1 vs. NCBI nr
Match: gi|657302859|ref|YP_009041086.1| (photosystem I P700 chlorophyll a apoprotein A2 [Rhazya stricta])

HSP 1 Score: 268.9 bits (686), Expect = 4.500e-69
Identity = 122/123 (99.19%), Postives = 122/123 (99.19%), Query Frame = 1 

		  

Query: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQFAIIFLW 60
           MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQ AIIFLW
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 60

Query: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120
           TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV
Sbjct: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120

Query: 121 YQW 124
           YQW
Sbjct: 121 YQW 123
[Close]
BLAST of Spo26126.1 vs. NCBI nr
Match: gi|404474524|ref|YP_006666029.1| (photosystem I P700 apoprotein A2 (chloroplast) [Capsicum annuum])

HSP 1 Score: 268.9 bits (686), Expect = 4.500e-69
Identity = 122/123 (99.19%), Postives = 122/123 (99.19%), Query Frame = 1 

		  

Query: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQFAIIFLW 60
           MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQ AIIFLW
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 60

Query: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120
           TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV
Sbjct: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120

Query: 121 YQW 124
           YQW
Sbjct: 121 YQW 123
[Close]
BLAST of Spo26126.1 vs. NCBI nr
Match: gi|229577753|ref|YP_002836089.1| (photosystem I P700 apoprotein A2 [Megaleranthis saniculifolia])

HSP 1 Score: 268.9 bits (686), Expect = 4.500e-69
Identity = 122/123 (99.19%), Postives = 122/123 (99.19%), Query Frame = 1 

		  

Query: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQFAIIFLW 60
           MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQ AIIFLW
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 60

Query: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120
           TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV
Sbjct: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120

Query: 121 YQW 124
           YQW
Sbjct: 121 YQW 123
[Close]
BLAST of Spo26126.1 vs. NCBI nr
Match: gi|671743318|ref|YP_009050848.1| (photosystem I P700 apoprotein A2 (chloroplast) [Camellia pubicosta])

HSP 1 Score: 268.9 bits (686), Expect = 4.500e-69
Identity = 122/123 (99.19%), Postives = 122/123 (99.19%), Query Frame = 1 

		  

Query: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQFAIIFLW 60
           MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQ AIIFLW
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 60

Query: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120
           TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV
Sbjct: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120

Query: 121 YQW 124
           YQW
Sbjct: 121 YQW 123
[Close]
BLAST of Spo26126.1 vs. UniProtKB/TrEMBL
Match: A0A0S1EH81_9LAMI (Photosystem I P700 chlorophyll a apoprotein A2 OS=Plantago media GN=psaB PE=3 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 3.100e-69
Identity = 122/123 (99.19%), Postives = 122/123 (99.19%), Query Frame = 1 

		  

Query: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQFAIIFLW 60
           MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQ AIIFLW
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 60

Query: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120
           TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV
Sbjct: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120

Query: 121 YQW 124
           YQW
Sbjct: 121 YQW 123
[Close]
BLAST of Spo26126.1 vs. UniProtKB/TrEMBL
Match: A0A0U2EU00_9APIA (Photosystem I P700 chlorophyll a apoprotein A2 OS=Fatsia japonica GN=psaB PE=3 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 3.100e-69
Identity = 122/123 (99.19%), Postives = 122/123 (99.19%), Query Frame = 1 

		  

Query: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQFAIIFLW 60
           MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQ AIIFLW
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 60

Query: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120
           TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV
Sbjct: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120

Query: 121 YQW 124
           YQW
Sbjct: 121 YQW 123
[Close]
BLAST of Spo26126.1 vs. UniProtKB/TrEMBL
Match: D3WD75_9MAGN (Photosystem I P700 chlorophyll a apoprotein A2 OS=Berberidopsis corallina GN=psaB PE=3 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 3.100e-69
Identity = 122/123 (99.19%), Postives = 122/123 (99.19%), Query Frame = 1 

		  

Query: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQFAIIFLW 60
           MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQ AIIFLW
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 60

Query: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120
           TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV
Sbjct: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120

Query: 121 YQW 124
           YQW
Sbjct: 121 YQW 123
[Close]
BLAST of Spo26126.1 vs. UniProtKB/TrEMBL
Match: A0A076FJ31_9DIPS (Photosystem I P700 apoprotein A2 (Fragment) OS=Viburnum lutescens GN=psaB PE=3 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 3.100e-69
Identity = 122/123 (99.19%), Postives = 122/123 (99.19%), Query Frame = 1 

		  

Query: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQFAIIFLW 60
           MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQ AIIFLW
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 60

Query: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120
           TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV
Sbjct: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120

Query: 121 YQW 124
           YQW
Sbjct: 121 YQW 123
[Close]
BLAST of Spo26126.1 vs. UniProtKB/TrEMBL
Match: A0A076FHH4_9DIPS (Photosystem I P700 apoprotein A2 (Fragment) OS=Viburnum clemensae GN=psaB PE=3 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 3.100e-69
Identity = 122/123 (99.19%), Postives = 122/123 (99.19%), Query Frame = 1 

		  

Query: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQFAIIFLW 60
           MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQ AIIFLW
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 60

Query: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120
           TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV
Sbjct: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120

Query: 121 YQW 124
           YQW
Sbjct: 121 YQW 123
[Close]
BLAST of Spo26126.1 vs. ExPASy Swiss-Prot
Match: PSAB_ILLOL (Photosystem I P700 chlorophyll a apoprotein A2 OS=Illicium oligandrum GN=psaB PE=3 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 2.800e-71
Identity = 122/123 (99.19%), Postives = 122/123 (99.19%), Query Frame = 1 

		  

Query: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQFAIIFLW 60
           MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQ AIIFLW
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 60

Query: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120
           TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV
Sbjct: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120

Query: 121 YQW 124
           YQW
Sbjct: 121 YQW 123
[Close]
BLAST of Spo26126.1 vs. ExPASy Swiss-Prot
Match: PSAB_LIRTU (Photosystem I P700 chlorophyll a apoprotein A2 OS=Liriodendron tulipifera GN=psaB PE=3 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 2.800e-71
Identity = 122/123 (99.19%), Postives = 122/123 (99.19%), Query Frame = 1 

		  

Query: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQFAIIFLW 60
           MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQ AIIFLW
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 60

Query: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120
           TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV
Sbjct: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120

Query: 121 YQW 124
           YQW
Sbjct: 121 YQW 123
[Close]
BLAST of Spo26126.1 vs. ExPASy Swiss-Prot
Match: PSAB_CALFG (Photosystem I P700 chlorophyll a apoprotein A2 OS=Calycanthus floridus var. glaucus GN=psaB PE=3 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 2.800e-71
Identity = 122/123 (99.19%), Postives = 122/123 (99.19%), Query Frame = 1 

		  

Query: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQFAIIFLW 60
           MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQ AIIFLW
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 60

Query: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120
           TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV
Sbjct: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120

Query: 121 YQW 124
           YQW
Sbjct: 121 YQW 123
[Close]
BLAST of Spo26126.1 vs. ExPASy Swiss-Prot
Match: PSAB_BUXMI (Photosystem I P700 chlorophyll a apoprotein A2 OS=Buxus microphylla GN=psaB PE=3 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 2.800e-71
Identity = 122/123 (99.19%), Postives = 122/123 (99.19%), Query Frame = 1 

		  

Query: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQFAIIFLW 60
           MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQ AIIFLW
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 60

Query: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120
           TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV
Sbjct: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120

Query: 121 YQW 124
           YQW
Sbjct: 121 YQW 123
[Close]
BLAST of Spo26126.1 vs. ExPASy Swiss-Prot
Match: PSAB_SOLBU (Photosystem I P700 chlorophyll a apoprotein A2 OS=Solanum bulbocastanum GN=psaB PE=3 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 2.800e-71
Identity = 122/123 (99.19%), Postives = 122/123 (99.19%), Query Frame = 1 

		  

Query: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQFAIIFLW 60
           MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQ AIIFLW
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 60

Query: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120
           TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV
Sbjct: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120

Query: 121 YQW 124
           YQW
Sbjct: 121 YQW 123
[Close]
BLAST of Spo26126.1 vs. TAIR (Arabidopsis)
Match: ATCG00340.1 (Photosystem I, PsaA/PsaB protein)

HSP 1 Score: 267.7 bits (683), Expect = 3.500e-72
Identity = 121/123 (98.37%), Postives = 122/123 (99.19%), Query Frame = 1 

		  

Query: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQFAIIFLW 60
           MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQ AIIFLW
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 60

Query: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120
           TSGNLFHVAWQGNFE+WVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV
Sbjct: 61  TSGNLFHVAWQGNFETWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120

Query: 121 YQW 124
           YQW
Sbjct: 121 YQW 123
[Close]
BLAST of Spo26126.1 vs. TAIR (Arabidopsis)
Match: ATCG00350.1 (Photosystem I, PsaA/PsaB protein)

HSP 1 Score: 90.9 bits (224), Expect = 5.900e-19
Identity = 47/105 (44.76%), Postives = 63/105 (60.00%), Query Frame = 1 

		  

Query: 8   FSQGLAQDP-TTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQFAIIFLWTSGNLF 67
           FS+ +A+ P TT  IW   A AHDF+SH    EE + + +F++HFGQ +IIFLW SG  F
Sbjct: 32  FSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEE-ISRKVFSAHFGQLSIIFLWLSGMYF 91

Query: 68  HVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALG 112
           H A   N+E+W+ DP H+ P A  +W P  GQ  +     GG  G
Sbjct: 92  HGARFSNYEAWLSDPTHIGPSAQVVW-PIVGQEILNGDVGGGFRG 134
The following BLAST results are available for this feature:
BLAST of Spo26126.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|1002165408|ref|YP_009235539.1|4.5e-6999.1PsaB (chloroplast) [Cynanchum ... [more]
gi|657302859|ref|YP_009041086.1|4.5e-6999.1photosystem I P700 chlorophyll... [more]
gi|404474524|ref|YP_006666029.1|4.5e-6999.1photosystem I P700 apoprotein ... [more]
gi|229577753|ref|YP_002836089.1|4.5e-6999.1photosystem I P700 apoprotein ... [more]
gi|671743318|ref|YP_009050848.1|4.5e-6999.1photosystem I P700 apoprotein ... [more]
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BLAST of Spo26126.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0S1EH81_9LAMI3.1e-6999.1Photosystem I P700 chlorophyll... [more]
A0A0U2EU00_9APIA3.1e-6999.1Photosystem I P700 chlorophyll... [more]
D3WD75_9MAGN3.1e-6999.1Photosystem I P700 chlorophyll... [more]
A0A076FJ31_9DIPS3.1e-6999.1Photosystem I P700 apoprotein ... [more]
A0A076FHH4_9DIPS3.1e-6999.1Photosystem I P700 apoprotein ... [more]
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BLAST of Spo26126.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PSAB_ILLOL2.8e-7199.1Photosystem I P700 chlorophyll... [more]
PSAB_LIRTU2.8e-7199.1Photosystem I P700 chlorophyll... [more]
PSAB_CALFG2.8e-7199.1Photosystem I P700 chlorophyll... [more]
PSAB_BUXMI2.8e-7199.1Photosystem I P700 chlorophyll... [more]
PSAB_SOLBU2.8e-7199.1Photosystem I P700 chlorophyll... [more]
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BLAST of Spo26126.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2
Match NameE-valueIdentityDescription
ATCG00340.13.5e-7298.3Photosystem I, PsaA/PsaB prote... [more]
ATCG00350.15.9e-1944.7Photosystem I, PsaA/PsaB prote... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001280Photosystem I PsaA/PsaBGENE3D1.20.1130.10coord: 4..123
score: 1.6
IPR001280Photosystem I PsaA/PsaBPFAMPF00223PsaA_PsaBcoord: 8..123
score: 5.4
IPR001280Photosystem I PsaA/PsaBunknownSSF81558Photosystem I subunits PsaA/PsaBcoord: 4..123
score: 5.36
NoneNo IPR availablePANTHERPTHR30128OUTER MEMBRANE PROTEIN, OMPA-RELATEDcoord: 3..123
score: 2.7
NoneNo IPR availablePANTHERPTHR30128:SF4PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN A2coord: 3..123
score: 2.7

GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015979 photosynthesis
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0018298 protein-chromophore linkage
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009522 photosystem I
cellular_component GO:0009579 thylakoid
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0005739 mitochondrion
molecular_function GO:0051539 4 iron, 4 sulfur cluster binding
molecular_function GO:0016168 chlorophyll binding
molecular_function GO:0009055 electron transfer activity
molecular_function GO:0000287 magnesium ion binding
molecular_function GO:0016491 oxidoreductase activity