Spo23468.1 (mRNA)

Overview
NameSpo23468.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionTransducin/WD40 repeat-like superfamily protein
LocationSpoScf_34888 : 118 .. 570 (+)
Sequence length365
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTTATGAAGTTGATTTCTCTCCTAATGGCTATCATTTGGCCACTGGTTCTGAGGATAACACTTGTCGGATTTGGGACTTGAGAAAGAAAAAGTCATTGTACATAATTCCTGCCCATTCAAAGCTTATTTCACAGGTCAAATTTGAGCCTCAGGAGGGATATTATTTGGTCACTGCTTCATATGATACAACTGTTAAGGTATGAGACTTGGCACTCAATTACTCTCAGTAGTCTGTTTTGTTAAGTTACAAGGAGTGTTTTGTCTCATTTTGTCCTATTTCATCAGGTATGGTCATCTCGAGACTTCAAGCTTATCAGGACATTGTCAGGACATGAAGCAAGAGTTACACCCTTAGATGTCACAGGAGGTAAGATCTTTTCTCTTGGTAAACTGTAGTAAAAGTGATGCGTGCAAAATGGGAACTTATAGTAGCATCTCATTACAAGTTTATA

mRNA sequence

GTTTATGAAGTTGATTTCTCTCCTAATGGCTATCATTTGGCCACTGGTTCTGAGGATAACACTTGTCGGATTTGGGACTTGAGAAAGAAAAAGTCATTGTACATAATTCCTGCCCATTCAAAGCTTATTTCACAGGTCAAATTTGAGCCTCAGGAGGGATATTATTTGGTCACTGCTTCATATGATACAACTGTTAAGGTATGGTCATCTCGAGACTTCAAGCTTATCAGGACATTGTCAGGACATGAAGCAAGAGTTACACCCTTAGATGTCACAGGAGGTAAGATCTTTTCTCTTGGTAAACTGTAGTAAAAGTGATGCGTGCAAAATGGGAACTTATAGTAGCATCTCATTACAAGTTTATA

Coding sequence (CDS)

GTTTATGAAGTTGATTTCTCTCCTAATGGCTATCATTTGGCCACTGGTTCTGAGGATAACACTTGTCGGATTTGGGACTTGAGAAAGAAAAAGTCATTGTACATAATTCCTGCCCATTCAAAGCTTATTTCACAGGTCAAATTTGAGCCTCAGGAGGGATATTATTTGGTCACTGCTTCATATGATACAACTGTTAAGGTATGGTCATCTCGAGACTTCAAGCTTATCAGGACATTGTCAGGACATGAAGCAAGAGTTACACCCTTAGATGTCACAGGAGGTAAGATCTTTTCTCTTGGTAAACTGTAG

Protein sequence

VYEVDFSPNGYHLATGSEDNTCRIWDLRKKKSLYIIPAHSKLISQVKFEPQEGYYLVTASYDTTVKVWSSRDFKLIRTLSGHEARVTPLDVTGGKIFSLGKL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo23468Spo23468gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo23468.1Spo23468.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo23468.1.exon.1Spo23468.1.exon.1exon
Spo23468.1.exon.2Spo23468.1.exon.2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo23468.1.CDS.1Spo23468.1.CDS.1CDS
Spo23468.1.CDS.2Spo23468.1.CDS.2CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo23468.1.utr3p.1Spo23468.1.utr3p.1three_prime_UTR


Homology
[Close]
BLAST of Spo23468.1 vs. NCBI nr
Match: gi|902165772|gb|KNA07149.1| (hypothetical protein SOVF_174510, partial [Spinacia oleracea])

HSP 1 Score: 196.8 bits (499), Expect = 1.800e-47
Identity = 93/96 (96.88%), Postives = 94/96 (97.92%), Query Frame = 1 

		  

Query: 1   VYEVDFSPNGYHLATGSEDNTCRIWDLRKKKSLYIIPAHSKLISQVKFEPQEGYYLVTAS 60
           VY VDFSPNGYHLATGSEDNTCRIWDLRKKKSLYIIPAHSKLISQVKFEPQEGYYLVTAS
Sbjct: 35  VYGVDFSPNGYHLATGSEDNTCRIWDLRKKKSLYIIPAHSKLISQVKFEPQEGYYLVTAS 94

Query: 61  YDTTVKVWSSRDFKLIRTLSGHEARVTPLDVTGGKI 97
           YDTTVKVWSSRDFKLIRTLSGHEARVT LDVTGG+I
Sbjct: 95  YDTTVKVWSSRDFKLIRTLSGHEARVTSLDVTGGEI 130
[Close]
BLAST of Spo23468.1 vs. NCBI nr
Match: gi|731324370|ref|XP_010672936.1| (PREDICTED: U4/U6 small nuclear ribonucleoprotein PRP4-like protein [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 174.5 bits (441), Expect = 9.600e-41
Identity = 78/93 (83.87%), Postives = 86/93 (92.47%), Query Frame = 1 

		  

Query: 1   VYEVDFSPNGYHLATGSEDNTCRIWDLRKKKSLYIIPAHSKLISQVKFEPQEGYYLVTAS 60
           V+ VDFSPNGYHLATGSEDNTCRIWDLRKKKS Y+IPAHSK +S+VKFEPQ+GYYLVTAS
Sbjct: 476 VFGVDFSPNGYHLATGSEDNTCRIWDLRKKKSFYVIPAHSKQLSRVKFEPQDGYYLVTAS 535

Query: 61  YDTTVKVWSSRDFKLIRTLSGHEARVTPLDVTG 94
           YDTT KVWSSRDFK I+TLSGHE+RV  LD+TG
Sbjct: 536 YDTTAKVWSSRDFKPIKTLSGHESRVASLDITG 568
[Close]
BLAST of Spo23468.1 vs. NCBI nr
Match: gi|661882214|emb|CDP14190.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 169.5 bits (428), Expect = 3.100e-39
Identity = 78/93 (83.87%), Postives = 83/93 (89.25%), Query Frame = 1 

		  

Query: 1   VYEVDFSPNGYHLATGSEDNTCRIWDLRKKKSLYIIPAHSKLISQVKFEPQEGYYLVTAS 60
           V  V FSPNGYHLA+G EDNTCRIWDLRK+KSLYIIPAHS LISQVKFEPQEGY+LVT S
Sbjct: 262 VLGVSFSPNGYHLASGGEDNTCRIWDLRKRKSLYIIPAHSNLISQVKFEPQEGYFLVTGS 321

Query: 61  YDTTVKVWSSRDFKLIRTLSGHEARVTPLDVTG 94
           YDTT KVWSSRDFK I+TLSGHEA+VT LDV G
Sbjct: 322 YDTTAKVWSSRDFKPIKTLSGHEAKVTSLDVVG 354
[Close]
BLAST of Spo23468.1 vs. NCBI nr
Match: gi|764620864|ref|XP_004303627.2| (PREDICTED: U4/U6 small nuclear ribonucleoprotein PRP4-like protein, partial [Fragaria vesca subsp. vesca])

HSP 1 Score: 169.1 bits (427), Expect = 4.000e-39
Identity = 76/93 (81.72%), Postives = 83/93 (89.25%), Query Frame = 1 

		  

Query: 1   VYEVDFSPNGYHLATGSEDNTCRIWDLRKKKSLYIIPAHSKLISQVKFEPQEGYYLVTAS 60
           V  + FSPNGYHLATG EDNTCRIWDLRKKKS+YIIPAHS LISQVKFEPQEGY+LVT S
Sbjct: 405 VLALSFSPNGYHLATGGEDNTCRIWDLRKKKSIYIIPAHSNLISQVKFEPQEGYFLVTGS 464

Query: 61  YDTTVKVWSSRDFKLIRTLSGHEARVTPLDVTG 94
           YD T K+WSSRDFK +RTLSGHEA+VT LDV+G
Sbjct: 465 YDMTAKIWSSRDFKPVRTLSGHEAKVTSLDVSG 497
[Close]
BLAST of Spo23468.1 vs. NCBI nr
Match: gi|697101801|ref|XP_009597855.1| (PREDICTED: U4/U6 small nuclear ribonucleoprotein PRP4-like protein [Nicotiana tomentosiformis])

HSP 1 Score: 169.1 bits (427), Expect = 4.000e-39
Identity = 77/93 (82.80%), Postives = 84/93 (90.32%), Query Frame = 1 

		  

Query: 1   VYEVDFSPNGYHLATGSEDNTCRIWDLRKKKSLYIIPAHSKLISQVKFEPQEGYYLVTAS 60
           V  V FSPNGYHLA+G EDNTCRIWDLR++KSLYIIPAHS LISQVKFEPQEGY+LVTAS
Sbjct: 453 VLGVSFSPNGYHLASGGEDNTCRIWDLRQRKSLYIIPAHSNLISQVKFEPQEGYFLVTAS 512

Query: 61  YDTTVKVWSSRDFKLIRTLSGHEARVTPLDVTG 94
           YDTT KVWSSRDFK ++TLSGHEA+VT LDV G
Sbjct: 513 YDTTAKVWSSRDFKPVKTLSGHEAKVTSLDVAG 545
[Close]
BLAST of Spo23468.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QIS7_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_174510 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 1.300e-47
Identity = 93/96 (96.88%), Postives = 94/96 (97.92%), Query Frame = 1 

		  

Query: 1   VYEVDFSPNGYHLATGSEDNTCRIWDLRKKKSLYIIPAHSKLISQVKFEPQEGYYLVTAS 60
           VY VDFSPNGYHLATGSEDNTCRIWDLRKKKSLYIIPAHSKLISQVKFEPQEGYYLVTAS
Sbjct: 35  VYGVDFSPNGYHLATGSEDNTCRIWDLRKKKSLYIIPAHSKLISQVKFEPQEGYYLVTAS 94

Query: 61  YDTTVKVWSSRDFKLIRTLSGHEARVTPLDVTGGKI 97
           YDTTVKVWSSRDFKLIRTLSGHEARVT LDVTGG+I
Sbjct: 95  YDTTVKVWSSRDFKLIRTLSGHEARVTSLDVTGGEI 130
[Close]
BLAST of Spo23468.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CT36_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g062190 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 6.700e-41
Identity = 78/93 (83.87%), Postives = 86/93 (92.47%), Query Frame = 1 

		  

Query: 1   VYEVDFSPNGYHLATGSEDNTCRIWDLRKKKSLYIIPAHSKLISQVKFEPQEGYYLVTAS 60
           V+ VDFSPNGYHLATGSEDNTCRIWDLRKKKS Y+IPAHSK +S+VKFEPQ+GYYLVTAS
Sbjct: 476 VFGVDFSPNGYHLATGSEDNTCRIWDLRKKKSFYVIPAHSKQLSRVKFEPQDGYYLVTAS 535

Query: 61  YDTTVKVWSSRDFKLIRTLSGHEARVTPLDVTG 94
           YDTT KVWSSRDFK I+TLSGHE+RV  LD+TG
Sbjct: 536 YDTTAKVWSSRDFKPIKTLSGHESRVASLDITG 568
[Close]
BLAST of Spo23468.1 vs. UniProtKB/TrEMBL
Match: A0A068V0B6_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00040445001 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 2.200e-39
Identity = 78/93 (83.87%), Postives = 83/93 (89.25%), Query Frame = 1 

		  

Query: 1   VYEVDFSPNGYHLATGSEDNTCRIWDLRKKKSLYIIPAHSKLISQVKFEPQEGYYLVTAS 60
           V  V FSPNGYHLA+G EDNTCRIWDLRK+KSLYIIPAHS LISQVKFEPQEGY+LVT S
Sbjct: 262 VLGVSFSPNGYHLASGGEDNTCRIWDLRKRKSLYIIPAHSNLISQVKFEPQEGYFLVTGS 321

Query: 61  YDTTVKVWSSRDFKLIRTLSGHEARVTPLDVTG 94
           YDTT KVWSSRDFK I+TLSGHEA+VT LDV G
Sbjct: 322 YDTTAKVWSSRDFKPIKTLSGHEAKVTSLDVVG 354
[Close]
BLAST of Spo23468.1 vs. UniProtKB/TrEMBL
Match: A0A022PSD0_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a003585mg PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 6.300e-39
Identity = 75/93 (80.65%), Postives = 83/93 (89.25%), Query Frame = 1 

		  

Query: 1   VYEVDFSPNGYHLATGSEDNTCRIWDLRKKKSLYIIPAHSKLISQVKFEPQEGYYLVTAS 60
           V  V FSPNGYHLATG EDNTCRIWDLRK+KSLYIIPAHS LISQVKFEPQEGY+LVTAS
Sbjct: 453 VLGVSFSPNGYHLATGGEDNTCRIWDLRKRKSLYIIPAHSNLISQVKFEPQEGYFLVTAS 512

Query: 61  YDTTVKVWSSRDFKLIRTLSGHEARVTPLDVTG 94
           YD T K+WSSRDFK ++TLSGHE++VT LD+ G
Sbjct: 513 YDMTAKIWSSRDFKPVKTLSGHESKVTSLDIVG 545
[Close]
BLAST of Spo23468.1 vs. UniProtKB/TrEMBL
Match: A0A067K1U2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22446 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.100e-38
Identity = 76/91 (83.52%), Postives = 82/91 (90.11%), Query Frame = 1 

		  

Query: 1   VYEVDFSPNGYHLATGSEDNTCRIWDLRKKKSLYIIPAHSKLISQVKFEPQEGYYLVTAS 60
           V  ++FSPNGYHLATG EDNTCRIWDLRKKKSLYIIPAH+ LISQVKFEPQEGYYLVTAS
Sbjct: 274 VLGINFSPNGYHLATGGEDNTCRIWDLRKKKSLYIIPAHANLISQVKFEPQEGYYLVTAS 333

Query: 61  YDTTVKVWSSRDFKLIRTLSGHEARVTPLDV 92
           YD T KVWS RDFK ++TLSGHEA+VT LDV
Sbjct: 334 YDMTAKVWSGRDFKPVKTLSGHEAKVTSLDV 364
[Close]
BLAST of Spo23468.1 vs. ExPASy Swiss-Prot
Match: PRP4L_ARATH (U4/U6 small nuclear ribonucleoprotein PRP4-like protein OS=Arabidopsis thaliana GN=LIS PE=2 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 4.200e-36
Identity = 63/92 (68.48%), Postives = 79/92 (85.87%), Query Frame = 1 

		  

Query: 1   VYEVDFSPNGYHLATGSEDNTCRIWDLRKKKSLYIIPAHSKLISQVKFEPQEGYYLVTAS 60
           V+ V+FSPNGYHLA+G EDN CRIWDLR +KSLYIIPAH+ L+SQVK+EPQEGY+L TAS
Sbjct: 426 VFSVNFSPNGYHLASGGEDNQCRIWDLRMRKSLYIIPAHANLVSQVKYEPQEGYFLATAS 485

Query: 61  YDTTVKVWSSRDFKLIRTLSGHEARVTPLDVT 93
           YD  V +WS RDF L+++L+GHE++V  LD+T
Sbjct: 486 YDMKVNIWSGRDFSLVKSLAGHESKVASLDIT 517
[Close]
BLAST of Spo23468.1 vs. ExPASy Swiss-Prot
Match: PRP4_BOVIN (U4/U6 small nuclear ribonucleoprotein Prp4 OS=Bos taurus GN=PRPF4 PE=2 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 2.100e-27
Identity = 47/92 (51.09%), Postives = 71/92 (77.17%), Query Frame = 1 

		  

Query: 1   VYEVDFSPNGYHLATGSEDNTCRIWDLRKKKSLYIIPAHSKLISQVKFEPQEGYYLVTAS 60
           +Y ++FSPNGYH+ATGS DNTC++WDLR+++ +Y IPAH  L++ VKFEP  G +L+T +
Sbjct: 409 IYGINFSPNGYHIATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPIHGNFLLTGA 468

Query: 61  YDTTVKVWSSRDFKLIRTLSGHEARVTPLDVT 93
           YD T K+W+   +  ++TL+GHE +V  LD++
Sbjct: 469 YDNTAKIWTHPGWSPLKTLAGHEGKVMGLDIS 500
[Close]
BLAST of Spo23468.1 vs. ExPASy Swiss-Prot
Match: PRP4_PONAB (U4/U6 small nuclear ribonucleoprotein Prp4 OS=Pongo abelii GN=PRPF4 PE=2 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 2.100e-27
Identity = 47/92 (51.09%), Postives = 71/92 (77.17%), Query Frame = 1 

		  

Query: 1   VYEVDFSPNGYHLATGSEDNTCRIWDLRKKKSLYIIPAHSKLISQVKFEPQEGYYLVTAS 60
           +Y ++FSPNGYH+ATGS DNTC++WDLR+++ +Y IPAH  L++ VKFEP  G +L+T +
Sbjct: 409 IYGINFSPNGYHIATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPIHGNFLLTGA 468

Query: 61  YDTTVKVWSSRDFKLIRTLSGHEARVTPLDVT 93
           YD T K+W+   +  ++TL+GHE +V  LD++
Sbjct: 469 YDNTAKIWTHPGWSPLKTLAGHEGKVMGLDIS 500
[Close]
BLAST of Spo23468.1 vs. ExPASy Swiss-Prot
Match: PRP4_HUMAN (U4/U6 small nuclear ribonucleoprotein Prp4 OS=Homo sapiens GN=PRPF4 PE=1 SV=2)

HSP 1 Score: 122.9 bits (307), Expect = 2.100e-27
Identity = 47/92 (51.09%), Postives = 71/92 (77.17%), Query Frame = 1 

		  

Query: 1   VYEVDFSPNGYHLATGSEDNTCRIWDLRKKKSLYIIPAHSKLISQVKFEPQEGYYLVTAS 60
           +Y ++FSPNGYH+ATGS DNTC++WDLR+++ +Y IPAH  L++ VKFEP  G +L+T +
Sbjct: 410 IYGINFSPNGYHIATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPIHGNFLLTGA 469

Query: 61  YDTTVKVWSSRDFKLIRTLSGHEARVTPLDVT 93
           YD T K+W+   +  ++TL+GHE +V  LD++
Sbjct: 470 YDNTAKIWTHPGWSPLKTLAGHEGKVMGLDIS 501
[Close]
BLAST of Spo23468.1 vs. ExPASy Swiss-Prot
Match: PRP4_MOUSE (U4/U6 small nuclear ribonucleoprotein Prp4 OS=Mus musculus GN=Prpf4 PE=1 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 2.700e-27
Identity = 47/92 (51.09%), Postives = 71/92 (77.17%), Query Frame = 1 

		  

Query: 1   VYEVDFSPNGYHLATGSEDNTCRIWDLRKKKSLYIIPAHSKLISQVKFEPQEGYYLVTAS 60
           +Y ++FSPNGYH+ATGS DNTC++WDLR+++ +Y IPAH  L++ VKFEP  G +L+T +
Sbjct: 409 IYGINFSPNGYHIATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPIHGDFLLTGA 468

Query: 61  YDTTVKVWSSRDFKLIRTLSGHEARVTPLDVT 93
           YD T K+W+   +  ++TL+GHE +V  LD++
Sbjct: 469 YDNTAKIWTHPGWSPLKTLAGHEGKVMGLDIS 500
[Close]
BLAST of Spo23468.1 vs. TAIR (Arabidopsis)
Match: AT2G41500.1 (WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related)

HSP 1 Score: 151.8 bits (382), Expect = 2.400e-37
Identity = 63/92 (68.48%), Postives = 79/92 (85.87%), Query Frame = 1 

		  

Query: 1   VYEVDFSPNGYHLATGSEDNTCRIWDLRKKKSLYIIPAHSKLISQVKFEPQEGYYLVTAS 60
           V+ V+FSPNGYHLA+G EDN CRIWDLR +KSLYIIPAH+ L+SQVK+EPQEGY+L TAS
Sbjct: 426 VFSVNFSPNGYHLASGGEDNQCRIWDLRMRKSLYIIPAHANLVSQVKYEPQEGYFLATAS 485

Query: 61  YDTTVKVWSSRDFKLIRTLSGHEARVTPLDVT 93
           YD  V +WS RDF L+++L+GHE++V  LD+T
Sbjct: 486 YDMKVNIWSGRDFSLVKSLAGHESKVASLDIT 517
[Close]
BLAST of Spo23468.1 vs. TAIR (Arabidopsis)
Match: AT2G05720.1 (Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 140.6 bits (353), Expect = 5.400e-34
Identity = 60/91 (65.93%), Postives = 73/91 (80.22%), Query Frame = 1 

		  

Query: 1   VYEVDFSPNGYHLATGSEDNTCRIWDLRKKKSLYIIPAHSKLISQVKFEPQEGYYLVTAS 60
           V  VDFSPNGYHLA+G EDN CRIWDLR +K LYIIPAH  L+SQVK+EPQE Y+L TAS
Sbjct: 175 VLSVDFSPNGYHLASGGEDNQCRIWDLRMRKLLYIIPAHVNLVSQVKYEPQERYFLATAS 234

Query: 61  YDTTVKVWSSRDFKLIRTLSGHEARVTPLDV 92
           +D  V +WS RDF L+++L GHE++V  LD+
Sbjct: 235 HDMNVNIWSGRDFSLVKSLVGHESKVASLDI 265
[Close]
BLAST of Spo23468.1 vs. TAIR (Arabidopsis)
Match: AT1G61210.1 (Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 70.5 bits (171), Expect = 6.900e-13
Identity = 34/87 (39.08%), Postives = 48/87 (55.17%), Query Frame = 1 

		  

Query: 4   VDFSPNGYHLATGSEDNTCRIWDLRKKKSLYIIPAHSKLISQVKFEPQEGYYLVTASYDT 63
           V+F P G  LA+GS D   +IWD+RKK  +     HS+ IS ++F P +G ++V+   D 
Sbjct: 106 VEFHPFGEFLASGSSDANLKIWDIRKKGCIQTYKGHSRGISTIRFTP-DGRWVVSGGLDN 165

Query: 64  TVKVWSSRDFKLIRTLSGHEARVTPLD 91
            VKVW     KL+     HE  +  LD
Sbjct: 166 VVKVWDLTAGKLLHEFKFHEGPIRSLD 191
[Close]
BLAST of Spo23468.1 vs. TAIR (Arabidopsis)
Match: AT1G11160.1 (Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 69.7 bits (169), Expect = 1.200e-12
Identity = 33/87 (37.93%), Postives = 47/87 (54.02%), Query Frame = 1 

		  

Query: 4   VDFSPNGYHLATGSEDNTCRIWDLRKKKSLYIIPAHSKLISQVKFEPQEGYYLVTASYDT 63
           V+F P G  LA+GS D   R+WD RKK  +     H++ IS ++F P +G ++V+   D 
Sbjct: 106 VEFHPFGEFLASGSSDTNLRVWDTRKKGCIQTYKGHTRGISTIEFSP-DGRWVVSGGLDN 165

Query: 64  TVKVWSSRDFKLIRTLSGHEARVTPLD 91
            VKVW     KL+     HE  +  LD
Sbjct: 166 VVKVWDLTAGKLLHEFKCHEGPIRSLD 191
[Close]
BLAST of Spo23468.1 vs. TAIR (Arabidopsis)
Match: AT5G23430.1 (Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 68.6 bits (166), Expect = 2.600e-12
Identity = 31/87 (35.63%), Postives = 49/87 (56.32%), Query Frame = 1 

		  

Query: 4   VDFSPNGYHLATGSEDNTCRIWDLRKKKSLYIIPAHSKLISQVKFEPQEGYYLVTASYDT 63
           VDF P G   A+GS D   +IWD+RKK  ++    H++ ++ ++F P +G ++V+   D 
Sbjct: 107 VDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNVLRFTP-DGRWVVSGGEDN 166

Query: 64  TVKVWSSRDFKLIRTLSGHEARVTPLD 91
            VKVW     KL+     HE ++  LD
Sbjct: 167 IVKVWDLTAGKLLTEFKSHEGQIQSLD 192
The following BLAST results are available for this feature:
BLAST of Spo23468.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902165772|gb|KNA07149.1|1.8e-4796.8hypothetical protein SOVF_1745... [more]
gi|731324370|ref|XP_010672936.1|9.6e-4183.8PREDICTED: U4/U6 small nuclear... [more]
gi|661882214|emb|CDP14190.1|3.1e-3983.8unnamed protein product [Coffe... [more]
gi|764620864|ref|XP_004303627.2|4.0e-3981.7PREDICTED: U4/U6 small nuclear... [more]
gi|697101801|ref|XP_009597855.1|4.0e-3982.8PREDICTED: U4/U6 small nuclear... [more]
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BLAST of Spo23468.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9QIS7_SPIOL1.3e-4796.8Uncharacterized protein (Fragm... [more]
A0A0J8CT36_BETVU6.7e-4183.8Uncharacterized protein OS=Bet... [more]
A0A068V0B6_COFCA2.2e-3983.8Uncharacterized protein OS=Cof... [more]
A0A022PSD0_ERYGU6.3e-3980.6Uncharacterized protein OS=Ery... [more]
A0A067K1U2_JATCU1.1e-3883.5Uncharacterized protein OS=Jat... [more]
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BLAST of Spo23468.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PRP4L_ARATH4.2e-3668.4U4/U6 small nuclear ribonucleo... [more]
PRP4_BOVIN2.1e-2751.0U4/U6 small nuclear ribonucleo... [more]
PRP4_PONAB2.1e-2751.0U4/U6 small nuclear ribonucleo... [more]
PRP4_HUMAN2.1e-2751.0U4/U6 small nuclear ribonucleo... [more]
PRP4_MOUSE2.7e-2751.0U4/U6 small nuclear ribonucleo... [more]
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BLAST of Spo23468.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5
Match NameE-valueIdentityDescription
AT2G41500.12.4e-3768.4WD-40 repeat family protein / ... [more]
AT2G05720.15.4e-3465.9Transducin/WD40 repeat-like su... [more]
AT1G61210.16.9e-1339.0Transducin/WD40 repeat-like su... [more]
AT1G11160.11.2e-1237.9Transducin/WD40 repeat-like su... [more]
AT5G23430.12.6e-1235.6Transducin/WD40 repeat-like su... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatPFAMPF00400WD40coord: 32..69
score: 0.0016coord: 1..26
score: 9.
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 29..69
score: 1.0E-5coord: 1..26
score:
IPR001680WD40 repeatPROFILEPS50082WD_REPEATS_2coord: 1..35
score: 15.02coord: 36..78
score: 13
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 1..87
score: 6.0
IPR017986WD40-repeat-containing domainPROFILEPS50294WD_REPEATS_REGIONcoord: 1..102
score: 23
IPR017986WD40-repeat-containing domainunknownSSF50978WD40 repeat-likecoord: 1..92
score: 1.13
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 13..27
scor
IPR027106U4/U6 small nuclear ribonucleoprotein Prp4PANTHERPTHR19846WD40 REPEAT PROTEINcoord: 1..92
score: 3.0

GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008380 RNA splicing
molecular_function GO:0005515 protein binding