Spo01972.1 (mRNA) | SpinachBase

Overview


Name	Spo01972.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Ribulose bisphosphate carboxylase large chain (RuBisCO large subunit) (4.1.1.39)
Location	SpoScf_60562 : 330 .. 512 (-)
Sequence length	183

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTGGTGGAGGAACTTTAGGACACCCTTGGGGGAATGCACCAGGTGCTGTAGCAAACCGAGTAGCTCTAGAAGCATGTGTACAAGCTCGTAATGAGGGACGTGATCTTGCTCGCGAAGGTAATACAATTATTCGCGAGGCTACCAAATGGAGTCCTGAACTAGCTGCTGCTTGTGAAGTATGA

mRNA sequence

TTTGGTGGAGGAACTTTAGGACACCCTTGGGGGAATGCACCAGGTGCTGTAGCAAACCGAGTAGCTCTAGAAGCATGTGTACAAGCTCGTAATGAGGGACGTGATCTTGCTCGCGAAGGTAATACAATTATTCGCGAGGCTACCAAATGGAGTCCTGAACTAGCTGCTGCTTGTGAAGTATGA

Coding sequence (CDS)

TTTGGTGGAGGAACTTTAGGACACCCTTGGGGGAATGCACCAGGTGCTGTAGCAAACCGAGTAGCTCTAGAAGCATGTGTACAAGCTCGTAATGAGGGACGTGATCTTGCTCGCGAAGGTAATACAATTATTCGCGAGGCTACCAAATGGAGTCCTGAACTAGCTGCTGCTTGTGAAGTATGA

Protein sequence

FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREATKWSPELAAACEV

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo01972	Spo01972	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo01972.1	Spo01972.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo01972.1.CDS.1	Spo01972.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo01972.1.exon.1	Spo01972.1.exon.1	exon

Homology

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BLAST of Spo01972.1 vs. NCBI nr
Match: gi|11497536|ref|NP_054944.1| (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Spinacia oleracea])

HSP 1 Score: 126.3 bits (316), Expect = 1.800e-26
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1

		  
Query: 1   FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREATKWSPELAAACEV 60
           FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREATKWSPELAAACEV
Sbjct: 402 FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREATKWSPELAAACEV 461

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BLAST of Spo01972.1 vs. NCBI nr
Match: gi|2392029|pdb|1AA1|L (Chain L, Activated Spinach Rubisco In Complex With The Product 3- Phosphoglycerate)

HSP 1 Score: 126.3 bits (316), Expect = 1.800e-26
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1

		  
Query: 1   FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREATKWSPELAAACEV 60
           FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREATKWSPELAAACEV
Sbjct: 402 FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREATKWSPELAAACEV 461

[Close]

BLAST of Spo01972.1 vs. NCBI nr
Match: gi|6689632|emb|CAB65533.1| (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Melocarpum hildebrandtii])

HSP 1 Score: 126.3 bits (316), Expect = 1.800e-26
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1

		  
Query: 1   FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREATKWSPELAAACEV 60
           FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREATKWSPELAAACEV
Sbjct: 393 FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREATKWSPELAAACEV 452

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BLAST of Spo01972.1 vs. NCBI nr
Match: gi|132051|sp|P00875.1|RBL_SPIOL (RecName: Full=Ribulose bisphosphate carboxylase large chain; Short=RuBisCO large subunit; Flags: Precursor)

HSP 1 Score: 126.3 bits (316), Expect = 1.800e-26
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1

		  
Query: 1   FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREATKWSPELAAACEV 60
           FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREATKWSPELAAACEV
Sbjct: 402 FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREATKWSPELAAACEV 461

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BLAST of Spo01972.1 vs. NCBI nr
Match: gi|1827835|pdb|8RUC|A (Chain A, Activated Spinach Rubisco Complexed With 2-carboxyarabinitol Bisphosphate)

HSP 1 Score: 126.3 bits (316), Expect = 1.800e-26
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1

		  
Query: 1   FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREATKWSPELAAACEV 60
           FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREATKWSPELAAACEV
Sbjct: 402 FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREATKWSPELAAACEV 461

[Close]

BLAST of Spo01972.1 vs. UniProtKB/TrEMBL
Match: Q6JXR3_9CARY (Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (Fragment) OS=Blitum nuttallianum GN=rbcL PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.200e-26
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1

		  
Query: 1   FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREATKWSPELAAACEV 60
           FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREATKWSPELAAACEV
Sbjct: 381 FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREATKWSPELAAACEV 440

[Close]

BLAST of Spo01972.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QPQ9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_155340 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.200e-26
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1

		  
Query: 1  FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREATKWSPELAAACEV 60
          FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREATKWSPELAAACEV
Sbjct: 16 FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREATKWSPELAAACEV 75

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BLAST of Spo01972.1 vs. UniProtKB/TrEMBL
Match: Q9SBX7_9ROSI (Ribulose-bisphosphate carboxylase large subunit (Fragment) OS=Melocarpum hildebrandtii GN=rbcL PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.200e-26
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1

		  
Query: 1   FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREATKWSPELAAACEV 60
           FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREATKWSPELAAACEV
Sbjct: 393 FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREATKWSPELAAACEV 452

[Close]

BLAST of Spo01972.1 vs. UniProtKB/TrEMBL
Match: A0A0M3SGK1_9CARY (Ribulose bisphosphate carboxylase large chain OS=Suaeda heterophylla GN=rbcL PE=3 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 1.600e-26
Identity = 59/60 (98.33%), Postives = 60/60 (100.00%), Query Frame = 1

		  
Query: 1   FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREATKWSPELAAACEV 60
           FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREATKWSPELAAACE+
Sbjct: 402 FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREATKWSPELAAACEI 461

[Close]

BLAST of Spo01972.1 vs. UniProtKB/TrEMBL
Match: A0A0M5KJF6_SUAMA (Ribulose bisphosphate carboxylase large chain OS=Suaeda maritima GN=rbcL PE=3 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 1.600e-26
Identity = 59/60 (98.33%), Postives = 60/60 (100.00%), Query Frame = 1

		  
Query: 1   FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREATKWSPELAAACEV 60
           FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREATKWSPELAAACE+
Sbjct: 402 FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREATKWSPELAAACEI 461

[Close]

BLAST of Spo01972.1 vs. ExPASy Swiss-Prot
Match: RBL_SPIOL (Ribulose bisphosphate carboxylase large chain OS=Spinacia oleracea GN=rbcL PE=1 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.100e-28
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1

		  
Query: 1   FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREATKWSPELAAACEV 60
           FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREATKWSPELAAACEV
Sbjct: 402 FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREATKWSPELAAACEV 461

[Close]

BLAST of Spo01972.1 vs. ExPASy Swiss-Prot
Match: RBL_BULAR (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Bulnesia arborea GN=rbcL PE=3 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 3.200e-28
Identity = 59/60 (98.33%), Postives = 60/60 (100.00%), Query Frame = 1

		  
Query: 1   FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREATKWSPELAAACEV 60
           FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREA+KWSPELAAACEV
Sbjct: 393 FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREASKWSPELAAACEV 452

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BLAST of Spo01972.1 vs. ExPASy Swiss-Prot
Match: RBL_STEHA (Ribulose bisphosphate carboxylase large chain OS=Stegnosperma halimifolium GN=rbcL PE=3 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 3.200e-28
Identity = 59/60 (98.33%), Postives = 60/60 (100.00%), Query Frame = 1

		  
Query: 1   FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREATKWSPELAAACEV 60
           FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREA+KWSPELAAACEV
Sbjct: 402 FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREASKWSPELAAACEV 461

[Close]

BLAST of Spo01972.1 vs. ExPASy Swiss-Prot
Match: RBL_ATRPA (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Atriplex patula GN=rbcL PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 4.200e-28
Identity = 58/60 (96.67%), Postives = 60/60 (100.00%), Query Frame = 1

		  
Query: 1   FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREATKWSPELAAACEV 60
           FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREA+KWSPELAAACE+
Sbjct: 402 FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREASKWSPELAAACEI 461

[Close]

BLAST of Spo01972.1 vs. ExPASy Swiss-Prot
Match: RBL_ATRRS (Ribulose bisphosphate carboxylase large chain OS=Atriplex rosea GN=rbcL PE=3 SV=2)

HSP 1 Score: 124.4 bits (311), Expect = 4.200e-28
Identity = 58/60 (96.67%), Postives = 60/60 (100.00%), Query Frame = 1

		  
Query: 1   FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREATKWSPELAAACEV 60
           FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREA+KWSPELAAACE+
Sbjct: 402 FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREASKWSPELAAACEI 461

[Close]

BLAST of Spo01972.1 vs. TAIR (Arabidopsis)
Match: ATCG00490.1 (ribulose-bisphosphate carboxylases)

HSP 1 Score: 118.6 bits (296), Expect = 1.300e-27
Identity = 57/60 (95.00%), Postives = 57/60 (95.00%), Query Frame = 1

		  
Query: 1   FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREATKWSPELAAACEV 60
           FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLA EGN IIREA KWSPELAAACEV
Sbjct: 402 FGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAVEGNEIIREACKWSPELAAACEV 461

The following BLAST results are available for this feature:

BLAST of Spo01972.1 vs. NCBI nr
BLAST of Spo01972.1 vs. UniProtKB/TrEMBL
BLAST of Spo01972.1 vs. ExPASy Swiss-Prot
BLAST of Spo01972.1 vs. TAIR (Arabidopsis)

BLAST of Spo01972.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
gi\|11497536\|ref\|NP_054944.1\|	1.8e-26	100.	ribulose-1,5-bisphosphate carb...	[more]
gi\|2392029\|pdb\|1AA1\|L	1.8e-26	100.	Chain L, Activated Spinach Rub...	[more]
gi\|6689632\|emb\|CAB65533.1\|	1.8e-26	100.	ribulose-1,5-bisphosphate carb...	[more]
gi\|132051\|sp\|P00875.1\|RBL_SPIOL	1.8e-26	100.	RecName: Full=Ribulose bisphos...	[more]
gi\|1827835\|pdb\|8RUC\|A	1.8e-26	100.	Chain A, Activated Spinach Rub...	[more]

BLAST of Spo01972.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
Q6JXR3_9CARY	1.2e-26	100.	Ribulose-1,5-bisphosphate carb...	[more]
A0A0K9QPQ9_SPIOL	1.2e-26	100.	Uncharacterized protein OS=Spi...	[more]
Q9SBX7_9ROSI	1.2e-26	100.	Ribulose-bisphosphate carboxyl...	[more]
A0A0M3SGK1_9CARY	1.6e-26	98.3	Ribulose bisphosphate carboxyl...	[more]
A0A0M5KJF6_SUAMA	1.6e-26	98.3	Ribulose bisphosphate carboxyl...	[more]

BLAST of Spo01972.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
RBL_SPIOL	1.1e-28	100.	Ribulose bisphosphate carboxyl...	[more]
RBL_BULAR	3.2e-28	98.3	Ribulose bisphosphate carboxyl...	[more]
RBL_STEHA	3.2e-28	98.3	Ribulose bisphosphate carboxyl...	[more]
RBL_ATRPA	4.2e-28	96.6	Ribulose bisphosphate carboxyl...	[more]
RBL_ATRRS	4.2e-28	96.6	Ribulose bisphosphate carboxyl...	[more]

BLAST of Spo01972.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1

Position :

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x 1


Match Name	E-value	Identity	Description
ATCG00490.1	1.3e-27	95.0	ribulose-bisphosphate carboxyl...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000685	Ribulose bisphosphate carboxylase, large subunit, C-terminal	GENE3D	3.20.20.110		coord: 1..60 score: 3.2
IPR000685	Ribulose bisphosphate carboxylase, large subunit, C-terminal	PFAM	PF00016	RuBisCO_large	coord: 1..59 score: 1.1
IPR000685	Ribulose bisphosphate carboxylase, large subunit, C-terminal	unknown	SSF51649	RuBisCo, C-terminal domain	coord: 1..59 score: 5.63
None	No IPR available	PANTHER	PTHR23321	RIBOSOMAL PROTEIN S15, BACTERIAL AND ORGANELLAR	coord: 1..54 score: 2.5
None	No IPR available	PANTHER	PTHR23321:SF31	RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN-RELATED	coord: 1..54 score: 2.5

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0046487	glyoxylate metabolic process
biological_process	GO:0034968	histone lysine methylation
biological_process	GO:0006554	lysine catabolic process
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0009853	photorespiration
biological_process	GO:0019253	reductive pentose-phosphate cycle
cellular_component	GO:0009573	chloroplast ribulose bisphosphate carboxylase complex
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0018024	histone-lysine N-methyltransferase activity
molecular_function	GO:0004497	monooxygenase activity
molecular_function	GO:0016984	ribulose-bisphosphate carboxylase activity
molecular_function	GO:0030785	[ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity