Spo16143.1 (mRNA)

Overview
NameSpo16143.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_70240 : 226 .. 492 (-)
Sequence length267
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGCCCGCCACCCGATTGCCGTCCTACAGTAGGGGCTTCGGCCCCCAAGGGCACGTGTCGTAGGCTAAGTCCGCGCGGCGGATGCGCCGCGTGGGCTGCCTTGAANCAGAATCCGGGCCAGAAGCGACGCATGCGCCCGCCACCCGATTGCCGTCCTACAGTAGGGGCTTCGGCCCCCAAGGGCACGTGTCGTAGGCTAAGTCCGCGCGGCGGATGCGCCGCGTGGGCTGCCTTGAAGTACAATTCCTCCCGAGTGGTGGGTTGA

mRNA sequence

ATGCGCCCGCCACCCGATTGCCGTCCTACAGTAGGGGCTTCGGCCCCCAAGGGCACGTGTCGTAGGCTAAGTCCGCGCGGCGGATGCGCCGCGTGGGCTGCCTTGAANCAGAATCCGGGCCAGAAGCGACGCATGCGCCCGCCACCCGATTGCCGTCCTACAGTAGGGGCTTCGGCCCCCAAGGGCACGTGTCGTAGGCTAAGTCCGCGCGGCGGATGCGCCGCGTGGGCTGCCTTGAAGTACAATTCCTCCCGAGTGGTGGGTTGA

Coding sequence (CDS)

ATGCGCCCGCCACCCGATTGCCGTCCTACAGTAGGGGCTTCGGCCCCCAAGGGCACGTGTCGTAGGCTAAGTCCGCGCGGCGGATGCGCCGCGTGGGCTGCCTTGAANCAGAATCCGGGCCAGAAGCGACGCATGCGCCCGCCACCCGATTGCCGTCCTACAGTAGGGGCTTCGGCCCCCAAGGGCACGTGTCGTAGGCTAAGTCCGCGCGGCGGATGCGCCGCGTGGGCTGCCTTGAAGTACAATTCCTCCCGAGTGGTGGGTTGA

Protein sequence

MRPPPDCRPTVGASAPKGTCRRLSPRGGCAAWAALXQNPGQKRRMRPPPDCRPTVGASAPKGTCRRLSPRGGCAAWAALKYNSSRVVG
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo16143Spo16143gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo16143.1Spo16143.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo16143.1.CDS.1Spo16143.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo16143.1.exon.1Spo16143.1.exon.1exon


Homology
[Close]
BLAST of Spo16143.1 vs. NCBI nr
Match: gi|870847962|gb|KMT00296.1| (hypothetical protein BVRB_1g016510 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 73.6 bits (179), Expect = 2.000e-10
Identity = 36/44 (81.82%), Postives = 36/44 (81.82%), Query Frame = 1 

		  

Query: 45 MRPPPDCRPTVGASAPKGTCRRLSPRGGCAAWAALKYNSSRVVG 89
          MRPP DCRPTVGASAPKGTCRRLS R GCA  AALKYNS R  G
Sbjct: 1  MRPPLDCRPTVGASAPKGTCRRLSQRRGCAVRAALKYNSYRAAG 44
[Close]
BLAST of Spo16143.1 vs. NCBI nr
Match: gi|674247890|gb|KFK40655.1| (hypothetical protein AALP_AA2G024700 [Arabis alpina])

HSP 1 Score: 64.3 bits (155), Expect = 1.200e-7
Identity = 31/44 (70.45%), Postives = 31/44 (70.45%), Query Frame = 1 

		  

Query: 45 MRPPPDCRPTVGASAPKGTCRRLSPRGGCAAWAALKYNSSRVVG 89
          M PPPDCRP VGA APKGTCRRLSP GG A   AL YN  R  G
Sbjct: 1  MCPPPDCRPAVGALAPKGTCRRLSPFGGSAVLTALNYNYHRAAG 44
[Close]
BLAST of Spo16143.1 vs. NCBI nr
Match: gi|674247896|gb|KFK40661.1| (hypothetical protein AALP_AA2G025300 [Arabis alpina])

HSP 1 Score: 62.0 bits (149), Expect = 6.000e-7
Identity = 30/44 (68.18%), Postives = 30/44 (68.18%), Query Frame = 1 

		  

Query: 45 MRPPPDCRPTVGASAPKGTCRRLSPRGGCAAWAALKYNSSRVVG 89
          M PPPDCRP VGA APKGTCRRLSP  G A   AL YN  R  G
Sbjct: 1  MCPPPDCRPAVGALAPKGTCRRLSPFSGSAVLTALNYNYHRAAG 44
[Close]
BLAST of Spo16143.1 vs. NCBI nr
Match: gi|674229816|gb|KFK23601.1| (hypothetical protein AALP_AAs48356U000200 [Arabis alpina])

HSP 1 Score: 58.5 bits (140), Expect = 6.600e-6
Identity = 28/38 (73.68%), Postives = 28/38 (73.68%), Query Frame = 1 

		  

Query: 45 MRPPPDCRPTVGASAPKGTCRRLSPRGGCAAWAALKYN 83
          M PPPDCRP VGA AP GTCRRLSP GG A   AL YN
Sbjct: 1  MCPPPDCRPAVGALAPTGTCRRLSPFGGSAVVTALNYN 38
[Close]
BLAST of Spo16143.1 vs. UniProtKB/TrEMBL
Match: A0A0J8EB82_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g016510 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.400e-10
Identity = 36/44 (81.82%), Postives = 36/44 (81.82%), Query Frame = 1 

		  

Query: 45 MRPPPDCRPTVGASAPKGTCRRLSPRGGCAAWAALKYNSSRVVG 89
          MRPP DCRPTVGASAPKGTCRRLS R GCA  AALKYNS R  G
Sbjct: 1  MRPPLDCRPTVGASAPKGTCRRLSQRRGCAVRAALKYNSYRAAG 44
[Close]
BLAST of Spo16143.1 vs. UniProtKB/TrEMBL
Match: A0A0D2ZQ70_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.700e-8
Identity = 32/44 (72.73%), Postives = 33/44 (75.00%), Query Frame = 1 

		  

Query: 45 MRPPPDCRPTVGASAPKGTCRRLSPRGGCAAWAALKYNSSRVVG 89
          MRPPPDCRP+VGASAPKGTCR LSP GG A   AL YN  R  G
Sbjct: 1  MRPPPDCRPSVGASAPKGTCRWLSPFGGSAVRTALNYNYHRAAG 44
[Close]
BLAST of Spo16143.1 vs. UniProtKB/TrEMBL
Match: A0A087HEV3_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA2G024700 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 8.400e-8
Identity = 31/44 (70.45%), Postives = 31/44 (70.45%), Query Frame = 1 

		  

Query: 45 MRPPPDCRPTVGASAPKGTCRRLSPRGGCAAWAALKYNSSRVVG 89
          M PPPDCRP VGA APKGTCRRLSP GG A   AL YN  R  G
Sbjct: 1  MCPPPDCRPAVGALAPKGTCRRLSPFGGSAVLTALNYNYHRAAG 44
[Close]
BLAST of Spo16143.1 vs. UniProtKB/TrEMBL
Match: A0A087HEV9_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA2G025300 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 4.200e-7
Identity = 30/44 (68.18%), Postives = 30/44 (68.18%), Query Frame = 1 

		  

Query: 45 MRPPPDCRPTVGASAPKGTCRRLSPRGGCAAWAALKYNSSRVVG 89
          M PPPDCRP VGA APKGTCRRLSP  G A   AL YN  R  G
Sbjct: 1  MCPPPDCRPAVGALAPKGTCRRLSPFSGSAVLTALNYNYHRAAG 44
[Close]
BLAST of Spo16143.1 vs. UniProtKB/TrEMBL
Match: A0A087G149_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AAs48356U000200 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 4.600e-6
Identity = 28/38 (73.68%), Postives = 28/38 (73.68%), Query Frame = 1 

		  

Query: 45 MRPPPDCRPTVGASAPKGTCRRLSPRGGCAAWAALKYN 83
          M PPPDCRP VGA AP GTCRRLSP GG A   AL YN
Sbjct: 1  MCPPPDCRPAVGALAPTGTCRRLSPFGGSAVVTALNYN 38
The following BLAST results are available for this feature:
BLAST of Spo16143.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 4
Match NameE-valueIdentityDescription
gi|870847962|gb|KMT00296.1|2.0e-1081.8hypothetical protein BVRB_1g01... [more]
gi|674247890|gb|KFK40655.1|1.2e-770.4hypothetical protein AALP_AA2G... [more]
gi|674247896|gb|KFK40661.1|6.0e-768.1hypothetical protein AALP_AA2G... [more]
gi|674229816|gb|KFK23601.1|6.6e-673.6hypothetical protein AALP_AAs4... [more]
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BLAST of Spo16143.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0J8EB82_BETVU1.4e-1081.8Uncharacterized protein OS=Bet... [more]
A0A0D2ZQ70_BRAOL1.7e-872.7Uncharacterized protein OS=Bra... [more]
A0A087HEV3_ARAAL8.4e-870.4Uncharacterized protein OS=Ara... [more]
A0A087HEV9_ARAAL4.2e-768.1Uncharacterized protein OS=Ara... [more]
A0A087G149_ARAAL4.6e-673.6Uncharacterized protein OS=Ara... [more]
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BLAST of Spo16143.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo16143.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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