Spo24633.1 (mRNA)

Overview
NameSpo24633.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
Description50S ribosomal protein L19, chloroplastic (CL19) (Precursor)
LocationSpoScf_72201 : 107 .. 454 (-)
Sequence length348
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
GCACTTCTTGTAATTCCATCGAATCACTCGCTTCAATGTCCGCCATTGAAGAAGCAATTAGGGTTTCCAATTGACTCCAACCGCCGATTTTCACTCTCCAGCAACTGTAGGAGTAATCTTATGGTTTCTAGGGCTTCATCTAACTTATTCAGCTCCAATTTCAGCTCGATTTTCTCTTTTCCGGCAAGAAATTCTTTCGTTGTGAGGTCGGAAGCGGAGGATAGCTCCGACGCTCCGGCTGAGAGTGTAGCTGTCGTTGCCGAGGAGGAATTGCCGGTGGAGTCGGAAGCCGAAGCTGAAGAAAGGCCGCCGAGGCAGCAAAGGGTCAAATTGGGAGATATAATGGGG

mRNA sequence

GCACTTCTTGTAATTCCATCGAATCACTCGCTTCAATGTCCGCCATTGAAGAAGCAATTAGGGTTTCCAATTGACTCCAACCGCCGATTTTCACTCTCCAGCAACTGTAGGAGTAATCTTATGGTTTCTAGGGCTTCATCTAACTTATTCAGCTCCAATTTCAGCTCGATTTTCTCTTTTCCGGCAAGAAATTCTTTCGTTGTGAGGTCGGAAGCGGAGGATAGCTCCGACGCTCCGGCTGAGAGTGTAGCTGTCGTTGCCGAGGAGGAATTGCCGGTGGAGTCGGAAGCCGAAGCTGAAGAAAGGCCGCCGAGGCAGCAAAGGGTCAAATTGGGAGATATAATGGGG

Coding sequence (CDS)

GCACTTCTTGTAATTCCATCGAATCACTCGCTTCAATGTCCGCCATTGAAGAAGCAATTAGGGTTTCCAATTGACTCCAACCGCCGATTTTCACTCTCCAGCAACTGTAGGAGTAATCTTATGGTTTCTAGGGCTTCATCTAACTTATTCAGCTCCAATTTCAGCTCGATTTTCTCTTTTCCGGCAAGAAATTCTTTCGTTGTGAGGTCGGAAGCGGAGGATAGCTCCGACGCTCCGGCTGAGAGTGTAGCTGTCGTTGCCGAGGAGGAATTGCCGGTGGAGTCGGAAGCCGAAGCTGAAGAAAGGCCGCCGAGGCAGCAAAGGGTCAAATTGGGAGATATAATGGGG

Protein sequence

ALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSNCRSNLMVSRASSNLFSSNFSSIFSFPARNSFVVRSEAEDSSDAPAESVAVVAEEELPVESEAEAEERPPRQQRVKLGDIMG
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo24633Spo24633gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo24633.1Spo24633.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo24633.1.CDS.1Spo24633.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo24633.1.exon.1Spo24633.1.exon.1exon


Homology
[Close]
BLAST of Spo24633.1 vs. NCBI nr
Match: gi|75107094|sp|P82413.2|RK19_SPIOL (RecName: Full=50S ribosomal protein L19, chloroplastic; AltName: Full=CL19; Flags: Precursor)

HSP 1 Score: 213.8 bits (543), Expect = 1.600e-52
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1 

		  

Query: 1   ALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSNCRSNLMVSRASSNLFSSNFSSIFSF 60
           ALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSNCRSNLMVSRASSNLFSSNFSSIFSF
Sbjct: 9   ALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSNCRSNLMVSRASSNLFSSNFSSIFSF 68

Query: 61  PARNSFVVRSEAEDSSDAPAESVAVVAEEELPVESEAEAEERPPRQQRVKLGDIMG 117
           PARNSFVVRSEAEDSSDAPAESVAVVAEEELPVESEAEAEERPPRQQRVKLGDIMG
Sbjct: 69  PARNSFVVRSEAEDSSDAPAESVAVVAEEELPVESEAEAEERPPRQQRVKLGDIMG 124
[Close]
BLAST of Spo24633.1 vs. NCBI nr
Match: gi|731332290|ref|XP_010677124.1| (PREDICTED: 50S ribosomal protein L19, chloroplastic [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 142.5 bits (358), Expect = 4.600e-31
Identity = 87/120 (72.50%), Postives = 94/120 (78.33%), Query Frame = 1 

		  

Query: 1   ALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSNCRSNLMVSRASSNLFSSNFSSIFSF 60
           ALL IPSNHSLQCPPLKKQLGFP+++ RRF LS N R N MVSRASSNLFSSNFSSIF F
Sbjct: 9   ALLTIPSNHSLQCPPLKKQLGFPVETYRRFFLS-NSRGNSMVSRASSNLFSSNFSSIFDF 68

Query: 61  PARNSFVVRSEAEDSSDAPAESVAVVAEEELPVESEAEA----EERPPRQQRVKLGDIMG 117
           PARNSFVVRSEAE+SS A AE    + EEELP  SEAEA    E R P + R KLGD+MG
Sbjct: 69  PARNSFVVRSEAEESSAALAE----IVEEELPENSEAEAVEEDEPRSPFKPRTKLGDVMG 123
[Close]
BLAST of Spo24633.1 vs. NCBI nr
Match: gi|1000941993|ref|XP_015582459.1| (PREDICTED: 50S ribosomal protein L19, chloroplastic [Ricinus communis])

HSP 1 Score: 59.7 bits (143), Expect = 3.900e-6
Identity = 54/119 (45.38%), Postives = 71/119 (59.66%), Query Frame = 1 

		  

Query: 1   ALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSN--CRSNLMVSRASSNLFSSNFSSIF 60
           AL++IP N + QCPP +K LGF    +R  S  SN  CR +L     SSN F SN  SI 
Sbjct: 9   ALVLIPINPT-QCPPPRK-LGFSAAVHRSCSSLSNSTCRVSL-----SSNSFGSNLDSII 68

Query: 61  SFPARNSFVVRSEAEDSSDAP-AESVAVVAEEELPVESEAEAEERPPRQQRVKLGDIMG 117
           S  A+  F+ R+E+E+S+ A  AE  + V E E   E++AE  E  PR+  +KLGDIMG
Sbjct: 69  SAFAKQRFIARAESEESAAAEVAEEESEVLEVEGQEEAKAEEIEIEPRKPIIKLGDIMG 120
[Close]
BLAST of Spo24633.1 vs. NCBI nr
Match: gi|223528581|gb|EEF30602.1| (50S ribosomal protein L19, putative [Ricinus communis])

HSP 1 Score: 59.7 bits (143), Expect = 3.900e-6
Identity = 54/119 (45.38%), Postives = 71/119 (59.66%), Query Frame = 1 

		  

Query: 1   ALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSN--CRSNLMVSRASSNLFSSNFSSIF 60
           AL++IP N + QCPP +K LGF    +R  S  SN  CR +L     SSN F SN  SI 
Sbjct: 9   ALVLIPINPT-QCPPPRK-LGFSAAVHRSCSSLSNSTCRVSL-----SSNSFGSNLDSII 68

Query: 61  SFPARNSFVVRSEAEDSSDAP-AESVAVVAEEELPVESEAEAEERPPRQQRVKLGDIMG 117
           S  A+  F+ R+E+E+S+ A  AE  + V E E   E++AE  E  PR+  +KLGDIMG
Sbjct: 69  SAFAKQRFIARAESEESAAAEVAEEESEVLEVEGQEEAKAEEIEIEPRKPIIKLGDIMG 120
[Close]
BLAST of Spo24633.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QR20_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_150800 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 1.100e-52
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1 

		  

Query: 1   ALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSNCRSNLMVSRASSNLFSSNFSSIFSF 60
           ALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSNCRSNLMVSRASSNLFSSNFSSIFSF
Sbjct: 9   ALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSNCRSNLMVSRASSNLFSSNFSSIFSF 68

Query: 61  PARNSFVVRSEAEDSSDAPAESVAVVAEEELPVESEAEAEERPPRQQRVKLGDIMG 117
           PARNSFVVRSEAEDSSDAPAESVAVVAEEELPVESEAEAEERPPRQQRVKLGDIMG
Sbjct: 69  PARNSFVVRSEAEDSSDAPAESVAVVAEEELPVESEAEAEERPPRQQRVKLGDIMG 124
[Close]
BLAST of Spo24633.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CE33_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g105130 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 3.200e-31
Identity = 87/120 (72.50%), Postives = 94/120 (78.33%), Query Frame = 1 

		  

Query: 1   ALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSNCRSNLMVSRASSNLFSSNFSSIFSF 60
           ALL IPSNHSLQCPPLKKQLGFP+++ RRF LS N R N MVSRASSNLFSSNFSSIF F
Sbjct: 9   ALLTIPSNHSLQCPPLKKQLGFPVETYRRFFLS-NSRGNSMVSRASSNLFSSNFSSIFDF 68

Query: 61  PARNSFVVRSEAEDSSDAPAESVAVVAEEELPVESEAEA----EERPPRQQRVKLGDIMG 117
           PARNSFVVRSEAE+SS A AE    + EEELP  SEAEA    E R P + R KLGD+MG
Sbjct: 69  PARNSFVVRSEAEESSAALAE----IVEEELPENSEAEAVEEDEPRSPFKPRTKLGDVMG 123
[Close]
BLAST of Spo24633.1 vs. UniProtKB/TrEMBL
Match: B9T0L9_RICCO (50S ribosomal protein L19, putative OS=Ricinus communis GN=RCOM_0192750 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.700e-6
Identity = 54/119 (45.38%), Postives = 71/119 (59.66%), Query Frame = 1 

		  

Query: 1   ALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSN--CRSNLMVSRASSNLFSSNFSSIF 60
           AL++IP N + QCPP +K LGF    +R  S  SN  CR +L     SSN F SN  SI 
Sbjct: 9   ALVLIPINPT-QCPPPRK-LGFSAAVHRSCSSLSNSTCRVSL-----SSNSFGSNLDSII 68

Query: 61  SFPARNSFVVRSEAEDSSDAP-AESVAVVAEEELPVESEAEAEERPPRQQRVKLGDIMG 117
           S  A+  F+ R+E+E+S+ A  AE  + V E E   E++AE  E  PR+  +KLGDIMG
Sbjct: 69  SAFAKQRFIARAESEESAAAEVAEEESEVLEVEGQEEAKAEEIEIEPRKPIIKLGDIMG 120
[Close]
BLAST of Spo24633.1 vs. ExPASy Swiss-Prot
Match: RK19_SPIOL (50S ribosomal protein L19, chloroplastic OS=Spinacia oleracea GN=RPL19 PE=1 SV=2)

HSP 1 Score: 213.8 bits (543), Expect = 1.000e-54
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1 

		  

Query: 1   ALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSNCRSNLMVSRASSNLFSSNFSSIFSF 60
           ALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSNCRSNLMVSRASSNLFSSNFSSIFSF
Sbjct: 9   ALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSNCRSNLMVSRASSNLFSSNFSSIFSF 68

Query: 61  PARNSFVVRSEAEDSSDAPAESVAVVAEEELPVESEAEAEERPPRQQRVKLGDIMG 117
           PARNSFVVRSEAEDSSDAPAESVAVVAEEELPVESEAEAEERPPRQQRVKLGDIMG
Sbjct: 69  PARNSFVVRSEAEDSSDAPAESVAVVAEEELPVESEAEAEERPPRQQRVKLGDIMG 124
The following BLAST results are available for this feature:
BLAST of Spo24633.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 4
Match NameE-valueIdentityDescription
gi|75107094|sp|P82413.2|RK19_SPIOL1.6e-52100.RecName: Full=50S ribosomal pr... [more]
gi|731332290|ref|XP_010677124.1|4.6e-3172.5PREDICTED: 50S ribosomal prote... [more]
gi|1000941993|ref|XP_015582459.1|3.9e-645.3PREDICTED: 50S ribosomal prote... [more]
gi|223528581|gb|EEF30602.1|3.9e-645.350S ribosomal protein L19, put... [more]
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BLAST of Spo24633.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 3
Match NameE-valueIdentityDescription
A0A0K9QR20_SPIOL1.1e-52100.Uncharacterized protein OS=Spi... [more]
A0A0J8CE33_BETVU3.2e-3172.5Uncharacterized protein OS=Bet... [more]
B9T0L9_RICCO2.7e-645.350S ribosomal protein L19, put... [more]
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BLAST of Spo24633.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RK19_SPIOL1.0e-54100.50S ribosomal protein L19, chl... [more]
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BLAST of Spo24633.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0009507 chloroplast
cellular_component GO:0005840 ribosome
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome