Spo24496.1 (mRNA)

Overview
NameSpo24496.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_01226 : 182090 .. 186315 (+)
Sequence length1178
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTGAAAGGGAGACGAATCTAAGGTTCATTTCTTCTAAGCAAGGGGATTTAATACATCTTCCTTCCCTGTTTTCCCAGAAGCTCAATTTCAAACCGTGAATACGGAGATTTTTAAATCCATCTCAAACCTAAAGAAACTTCTGGCCTAGCTGAGTGGATAACTTAATTTCCTACATCATGTATCACTGGCTTCGAGCTATTCTTTGATCAGTACTTTTTGTATTTTTAAAGCCACATTTTTCCAAATTTATCTTCGACATTTCCGGTTACAAAATTTAGCATCTTCGTTGAACAACTCCATCGCCAAGTTCTTCGACTTTGCCGTACCGATCTGAATCCAAGCCATGTCACGAATTACGATGTCAACACTCCTCACGTTGTCGTCTCCCTCATCGTCATTTTCGCGGTGGATAGTGTGGTTGTGTCCTTCATCCCAACCATCGATTTCGACTCGGAGAAAGTCGGATTCATCCGCCGGCGAAGGGTCGGTGGAGTTCAGATGTCTAGGTGGGGCGATGTTGAGTAGGTGGAGGAGCGTCGTCTTCTTGCGCTACCAGAGCAGTATGAATGGTAATATTTTCCTTTTGTTAGTTCTTTCTAGGTTTATTCCTAAATTTGTGATTATATAATTTTTTGGATGTATCTTGGTGGAATTATCTACAATCTATGATTTTAAAACTTGTAGTTAACTGATAAATCTGTTTCATTTTTTTGCGGGTATCACGAATTCTTTGAGTTAGGGATTTTAAGAACTTTTTAGATTTGTCCCGTTAGAACTAATTTTAATAGATTGGCATATTTTTAAAGAAATTTAATCCATTTGAAAACAGAATGAACACATTGATTTAGAGTTAGGGGTTACATATTTTTATTTTTATTATCTACTCTTCTGGGTGCATACTGTACATTTCTCAACTACTAGTTGATACTCTATTTCGAACTAATTATGCTTCAGTGAGTATAGTTTTGTTCGTATTTCCAATAAATGGACATGTTATTGGAAATATTCTAGTTACATGTTACAACTGTTAATTATTGCTCTTTCCATAGTAAGCCCTAAATGCTCGACTGTTACAATTTTAATTGAGATATTAGTTCGATTTTTTAAGACTTGATAATTAAATGTTTGGAAAAATCAGGCAAATGTGTATATACTTCCATCGTTTTTTTACTTGCACCATTTTGGTTGGTCACAAAAGATTAAGAAAAAATTATAACCATCAAAATTGTCCATATGAGAACAAATAAAAGAGAGGAAAATTTTAGGTAACTAATGGTAAATGTAAAATTTGAGTAAGGGCAAAGTGGGTATTTAGTATGTGAACACACCAAAAACCTTGTGAAAACATACCATAAAGGAAAATGGTGTAACTAATATTCAACTTCCATAAAAGGATAATAGTACAAGTAAAAAGAACGGAGGAAGTTTTTTTTTTTAATTTTAATTTAGGTTTGGAAGATTTTATAGTTCATCACGCTGATGGTTTCCTTGCTTTACTACTTTTTATGTGAACAAATATCCCCCCCCCCCCCCCCCCCCCNCCCCTCTCCCAATTAAGGTGTAATTACTGAAAAATGTGGTGTTTATTATGCTCCAAGATGATGTAAAATACTATACAATTATGTGTAATTACTTCCTACATTTTGTCTGGACCATTTTATTTTTGTAGCTTGTTTTCTGGAGGTCATGATGAGGAATATATTTGATAAGATTTCACTTGGTGTTTGTGTATGAAATGTTCCACCTTGATTTCTCCCCCTAAAAGAATATAAAGATGGATTAAATAAGGTGAAAAAAGTCATGTCGATCTTTTAGTTCTGAATGCGATTTCTTTACAATTTTATGATTCTATCGTTTGGATTTGTGTTTCTAATTGCACTTAGAAAATGTGGTGGTTAGTAGGAATATTCACTCGACCGTTACTTGTGTTTCTATCTTTAAGTCTAAGTCGTTTTCCCATTGCATTTACTTGTTCAGTTGTTCCTGAATCTGCAGGGAGCCTTTGAGTCAAGGATCTGTTTCATTTTTGTGCAGGTATCACAAATTCTCGCAAACATCTCATTTTAATCATTAGGAAGTTTGGATTATTCTAGTTCTGTTTTTTTTTTTTTTTTTGTTATTGAGTAATTGTTGTATGTGTAGTTGCACTTGCCAGTTCCATATTTTGGCCCGTTCGGTAACAATGTCAGTGTCCAGCTTTTTTTTTTTTTTTGGACAGGAGTTTCCAGTTTTTTGGTTTTATAAGTCATATGATTTAGATTGAATAATGAACTAAAAAATAGTCATACCTATTGTAATCATGTTAATTTTGAAAACTGACAACAAAAATCCGGAAACTACTTTTTGTGGTTTTCATATTGAACAGAAAACTGGAAACAAAAAACGATACCGGGCGAGAATTTTGGGAAAAGTAACATAATTAAATTGTGCAAACTCATAATGAAAAGTTATTGAGTAAGATTCCTAGAGCGCCTTTGAAAGACAAGAAGGCTGGTGGTTTTGATTTTGCATTCATTTTGTTTAGTTTTGTGAAGAAGTATTATTGCCTCCCTTTTAGCTTCTAACTTGGAGAAAAAGTTTAGCCACAAAATAATTAGTTTGTTAGATATGGATTAACTATCTTCCCCTTGATTCATACGGAGTACTTGTTTTGTTTTATAACTGAGAGAGAAGAGGAATGGAACTATTGGAAAGATTACGCCGGAGAATATTTTAGATTCAATTCCTTATAGATTTATTAAAAAGATAGATCCTAGAAATTAGATTACAATTGTTATTTGAATCATAGTTTTGCTTAGGAATATGCTATCGTTTTTTGTTGTGAAAATTCTATGGCTGAATATTTCACTAATTATAATGTTTTTGTAGGTATCTCTTGTATGTAATGAAAGTGGGCACTCTAACAAAAGATTGCTTGGAGCTTGTTCTGGATTTGCTTATGTCGGCTATAAAAGCCAGGGTGAAGGTAGGAAGTTGAGACATGAGAGTTGGACTTGGGGACCTGCACCTTTTGTTTTGGAGCTTGTTTTGGATTTGCTTATGTCGCCAGGGTGCAGGTCCTAAAGGGTGAAGGAAAAAGGTGCAGGTTCCAAAGGGTGAAAAACTCAAAAAGTTGAGTCTACAAACATTAGCTTACCTCTAATAAAAACTATTCTATCTATCTTCTTACTTTAATTTATGCCTTCATATCTTAGGAAATTAAAACATGGATGACATAAACATGGGTAAATGGGTGGCAGTGTGTTTGTCATTTTCCACTTACAACAGAAACATGCATTCTAACTTCATGATTCAATTAACTCACTCTTCATGCATGAAGTAAGTTTCTCACTAGCAAGCAGTTGAATCACGTAATTTAGGTAATTCATTACATCCTATTATTTCACTTATAGTGGTTTAATTAGCACTATAAATATTCGGAAAACTTGTGTGTAAAAAAACAAAACAAAACATAATTTACATAGGATAAAATTAGCCTTGATTAGCTCATCATAATTTACATATAGCAATTTCAAGCAATAATGGAGGGAGTCTCACACAAGCTTTTTGCTCCAATTGTTTTGGTTGCCCTAATCTTGGTTTTGAATACTACAACAGGTTAATTAATTATTTTTTTGAGTTTCAAAATTAATCTAATTTTAATTAGCATATGTGATTTTGGAATTTTTTTTTTTTTTTATCCTTAATTCTTTTGTCTACTACTCCGTATTGCAGTAAGTAGTGAAGAAATGCCAAAGATGTACGTAATGGAAGAAGTGACAATGGTCGAACCAAACACAAACATGGTGCATAATAATGGGAATATTCATAAACCAAAGATGATGATAATGCAATTTGTTGATCAACAAAATAATAAGGAAGCTAATTCTATGGCGGCAACAACCACGTCGACTACGTCGTCGTCGACTGAGTCTGGTCTGAGATGCGCCGATGAGGGCGAATACTGTAACACCCTCTTTGGAAATAGTTGTTGCCCTGGTATTGATTGTGTTCAAGGACCTTTTGTAGGTGGTAGGTGCCATAAATGGTAACTAATTAAGAGCATTATATATATAGCATTATATATGCTTAGTTTAGTAGACAAATCAACGAAGTTGAACATGTAAATTAAATAACGTGCACCATATAAGATGTGCATGTCTCTGTACGTGTGTAAGTTTAATAATAATAATATCATGAAAAAAATAAAGACTAGCTTTCATGAGAAGTCATGAATCATTTCATAT

mRNA sequence

TTGAAAGGGAGACGAATCTAAGGTTCATTTCTTCTAAGCAAGGGGATTTAATACATCTTCCTTCCCTGTTTTCCCAGAAGCTCAATTTCAAACCGTGAATACGGAGATTTTTAAATCCATCTCAAACCTAAAGAAACTTCTGGCCTAGCTGAGTGGATAACTTAATTTCCTACATCATGTATCACTGGCTTCGAGCTATTCTTTGATCAGTACTTTTTGTATTTTTAAAGCCACATTTTTCCAAATTTATCTTCGACATTTCCGGTTACAAAATTTAGCATCTTCGTTGAACAACTCCATCGCCAAGTTCTTCGACTTTGCCGTACCGATCTGAATCCAAGCCATGTCACGAATTACGATGTCAACACTCCTCACGTTGTCGTCTCCCTCATCGTCATTTTCGCGGTGGATAGTGTGGTTGTGTCCTTCATCCCAACCATCGATTTCGACTCGGAGAAAGTCGGATTCATCCGCCGGCGAAGGGTCGGTGGAGTTCAGATGTCTAGGTGGGGCGATGTTGAGTAGGTGGAGGAGCGTCGTCTTCTTGCGCTACCAGAGCAGTATGAATGGTATCTCTTGTATGTAATGAAAGTGGGCACTCTAACAAAAGATTGCTTGGAGCTTGTTCTGGATTTGCTTATGTCGGCTATAAAAGCCAGGGTGAAGTAAGTAGTGAAGAAATGCCAAAGATGTACGTAATGGAAGAAGTGACAATGGTCGAACCAAACACAAACATGGTGCATAATAATGGGAATATTCATAAACCAAAGATGATGATAATGCAATTTGTTGATCAACAAAATAATAAGGAAGCTAATTCTATGGCGGCAACAACCACGTCGACTACGTCGTCGTCGACTGAGTCTGGTCTGAGATGCGCCGATGAGGGCGAATACTGTAACACCCTCTTTGGAAATAGTTGTTGCCCTGGTATTGATTGTGTTCAAGGACCTTTTGTAGGTGGTAGGTGCCATAAATGGTAACTAATTAAGAGCATTATATATATAGCATTATATATGCTTAGTTTAGTAGACAAATCAACGAAGTTGAACATGTAAATTAAATAACGTGCACCATATAAGATGTGCATGTCTCTGTACGTGTGTAAGTTTAATAATAATAATATCATGAAAAAAATAAAGACTAGCTTTCATGAGAAGTCATGAATCATTTCATAT

Coding sequence (CDS)

ATGGTATCTCTTGTATGTAATGAAAGTGGGCACTCTAACAAAAGATTGCTTGGAGCTTGTTCTGGATTTGCTTATGTCGGCTATAAAAGCCAGGGTGAAGTAAGTAGTGAAGAAATGCCAAAGATGTACGTAATGGAAGAAGTGACAATGGTCGAACCAAACACAAACATGGTGCATAATAATGGGAATATTCATAAACCAAAGATGATGATAATGCAATTTGTTGATCAACAAAATAATAAGGAAGCTAATTCTATGGCGGCAACAACCACGTCGACTACGTCGTCGTCGACTGAGTCTGGTCTGAGATGCGCCGATGAGGGCGAATACTGTAACACCCTCTTTGGAAATAGTTGTTGCCCTGGTATTGATTGTGTTCAAGGACCTTTTGTAGGTGGTAGGTGCCATAAATGGTAA

Protein sequence

MVSLVCNESGHSNKRLLGACSGFAYVGYKSQGEVSSEEMPKMYVMEEVTMVEPNTNMVHNNGNIHKPKMMIMQFVDQQNNKEANSMAATTTSTTSSSTESGLRCADEGEYCNTLFGNSCCPGIDCVQGPFVGGRCHKW
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo24496Spo24496gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo24496.1Spo24496.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo24496.1.exon.1Spo24496.1.exon.1exon
Spo24496.1.exon.2Spo24496.1.exon.2exon
Spo24496.1.exon.3Spo24496.1.exon.3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo24496.1.utr5p.1Spo24496.1.utr5p.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo24496.1.CDS.1Spo24496.1.CDS.1CDS
Spo24496.1.CDS.2Spo24496.1.CDS.2CDS
Spo24496.1.CDS.3Spo24496.1.CDS.3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo24496.1.utr3p.1Spo24496.1.utr3p.1three_prime_UTR


Homology
[Close]
BLAST of Spo24496.1 vs. NCBI nr
Match: gi|902141321|gb|KNA04694.1| (hypothetical protein SOVF_197300 [Spinacia oleracea])

HSP 1 Score: 285.0 bits (728), Expect = 6.800e-74
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 1 

		  

Query: 2   VSLVCNESGHSNKRLLGACSGFAYVGYKSQGEVSSEEMPKMYVMEEVTMVEPNTNMVHNN 61
           VSLVCNESGHSNKRLLGACSGFAYVGYKSQGEVSSEEMPKMYVMEEVTMVEPNTNMVHNN
Sbjct: 21  VSLVCNESGHSNKRLLGACSGFAYVGYKSQGEVSSEEMPKMYVMEEVTMVEPNTNMVHNN 80

Query: 62  GNIHKPKMMIMQFVDQQNNKEANSMAATTTSTTSSSTESGLRCADEGEYCNTLFGNSCCP 121
           GNIHKPKMMIMQFVDQQNNKEANSMAATTTSTTSSSTESGLRCADEGEYCNTLFGNSCCP
Sbjct: 81  GNIHKPKMMIMQFVDQQNNKEANSMAATTTSTTSSSTESGLRCADEGEYCNTLFGNSCCP 140

Query: 122 GIDCVQGPFVGGRCHKW 139
           GIDCVQGPFVGGRCHKW
Sbjct: 141 GIDCVQGPFVGGRCHKW 157
[Close]
BLAST of Spo24496.1 vs. NCBI nr
Match: gi|902162398|gb|KNA06684.1| (hypothetical protein SOVF_178740 [Spinacia oleracea])

HSP 1 Score: 204.1 bits (518), Expect = 1.500e-49
Identity = 100/105 (95.24%), Postives = 100/105 (95.24%), Query Frame = 1 

		  

Query: 34  VSSEEMPKMYVMEEVTMVEPNTNMVHNNGNIHKPKMMIMQFVDQQNNKEANSMAATTTST 93
           VSSEEMPKMYVMEEVTMVEPNTNMVHNNGNIHKPKMMIMQFVDQQNNKEANSMAA    T
Sbjct: 26  VSSEEMPKMYVMEEVTMVEPNTNMVHNNGNIHKPKMMIMQFVDQQNNKEANSMAAI---T 85

Query: 94  TSSSTESGLRCADEGEYCNTLFGNSCCPGIDCVQGPFVGGRCHKW 139
           TSSSTESGLRCADEGEYCNTLFGNSCCPGI CVQGPFVGGRCHKW
Sbjct: 86  TSSSTESGLRCADEGEYCNTLFGNSCCPGIACVQGPFVGGRCHKW 127
[Close]
BLAST of Spo24496.1 vs. NCBI nr
Match: gi|731359140|ref|XP_010691125.1| (PREDICTED: uncharacterized protein LOC104904545 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 84.7 bits (208), Expect = 1.400e-13
Identity = 44/104 (42.31%), Postives = 60/104 (57.69%), Query Frame = 1 

		  

Query: 35  SSEEMPKMYVMEEVTMVEPNTNMVHNNGNIHKPKMMIMQFVDQQNNKEANSMAATTTSTT 94
           +SEEMP +Y++EEV +V+P  NM +N     K  M+ M  + Q+ +K             
Sbjct: 42  NSEEMPNVYIIEEVAIVKPKANMKNNIIENQKSNMINMILMKQRPSK------------- 101

Query: 95  SSSTESGLRCADEGEYCNTLFGNSCCPGIDCVQGPFVGGRCHKW 139
             + E+ L C  EG+YCNTL G +CC GI CVQ P VGG CH+W
Sbjct: 102 --AIETILNCQSEGQYCNTLTGPNCCSGIACVQAPIVGGVCHQW 130
[Close]
BLAST of Spo24496.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QBP5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_197300 PE=4 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 4.800e-74
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 1 

		  

Query: 2   VSLVCNESGHSNKRLLGACSGFAYVGYKSQGEVSSEEMPKMYVMEEVTMVEPNTNMVHNN 61
           VSLVCNESGHSNKRLLGACSGFAYVGYKSQGEVSSEEMPKMYVMEEVTMVEPNTNMVHNN
Sbjct: 21  VSLVCNESGHSNKRLLGACSGFAYVGYKSQGEVSSEEMPKMYVMEEVTMVEPNTNMVHNN 80

Query: 62  GNIHKPKMMIMQFVDQQNNKEANSMAATTTSTTSSSTESGLRCADEGEYCNTLFGNSCCP 121
           GNIHKPKMMIMQFVDQQNNKEANSMAATTTSTTSSSTESGLRCADEGEYCNTLFGNSCCP
Sbjct: 81  GNIHKPKMMIMQFVDQQNNKEANSMAATTTSTTSSSTESGLRCADEGEYCNTLFGNSCCP 140

Query: 122 GIDCVQGPFVGGRCHKW 139
           GIDCVQGPFVGGRCHKW
Sbjct: 141 GIDCVQGPFVGGRCHKW 157
[Close]
BLAST of Spo24496.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QHH5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_178740 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 1.100e-49
Identity = 100/105 (95.24%), Postives = 100/105 (95.24%), Query Frame = 1 

		  

Query: 34  VSSEEMPKMYVMEEVTMVEPNTNMVHNNGNIHKPKMMIMQFVDQQNNKEANSMAATTTST 93
           VSSEEMPKMYVMEEVTMVEPNTNMVHNNGNIHKPKMMIMQFVDQQNNKEANSMAA    T
Sbjct: 26  VSSEEMPKMYVMEEVTMVEPNTNMVHNNGNIHKPKMMIMQFVDQQNNKEANSMAAI---T 85

Query: 94  TSSSTESGLRCADEGEYCNTLFGNSCCPGIDCVQGPFVGGRCHKW 139
           TSSSTESGLRCADEGEYCNTLFGNSCCPGI CVQGPFVGGRCHKW
Sbjct: 86  TSSSTESGLRCADEGEYCNTLFGNSCCPGIACVQGPFVGGRCHKW 127
[Close]
BLAST of Spo24496.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BKR8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g219440 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 9.400e-14
Identity = 44/104 (42.31%), Postives = 60/104 (57.69%), Query Frame = 1 

		  

Query: 35  SSEEMPKMYVMEEVTMVEPNTNMVHNNGNIHKPKMMIMQFVDQQNNKEANSMAATTTSTT 94
           +SEEMP +Y++EEV +V+P  NM +N     K  M+ M  + Q+ +K             
Sbjct: 42  NSEEMPNVYIIEEVAIVKPKANMKNNIIENQKSNMINMILMKQRPSK------------- 101

Query: 95  SSSTESGLRCADEGEYCNTLFGNSCCPGIDCVQGPFVGGRCHKW 139
             + E+ L C  EG+YCNTL G +CC GI CVQ P VGG CH+W
Sbjct: 102 --AIETILNCQSEGQYCNTLTGPNCCSGIACVQAPIVGGVCHQW 130
The following BLAST results are available for this feature:
BLAST of Spo24496.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 3
Match NameE-valueIdentityDescription
gi|902141321|gb|KNA04694.1|6.8e-74100.hypothetical protein SOVF_1973... [more]
gi|902162398|gb|KNA06684.1|1.5e-4995.2hypothetical protein SOVF_1787... [more]
gi|731359140|ref|XP_010691125.1|1.4e-1342.3PREDICTED: uncharacterized pro... [more]
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BLAST of Spo24496.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 3
Match NameE-valueIdentityDescription
A0A0K9QBP5_SPIOL4.8e-74100.Uncharacterized protein OS=Spi... [more]
A0A0K9QHH5_SPIOL1.1e-4995.2Uncharacterized protein OS=Spi... [more]
A0A0J8BKR8_BETVU9.4e-1442.3Uncharacterized protein OS=Bet... [more]
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BLAST of Spo24496.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo24496.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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