Spo19561.1 (mRNA)

Overview
NameSpo19561.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionDNA-directed RNA polymerase subunit beta'' (2.7.7.6) (PEP) (Plastid-encoded RNA polymerase subunit beta'')
LocationSuper_scaffold_229 : 401971 .. 406562 (+)
Sequence length531
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAAAGATCTTAAAGGTAACTTTTTTGTAGTTCCTTTCTTAATTTCCCCCAATAATTCAATTTCATTTCTTGCTATTTATCAAAATTTAGAGTAATTAAATCTTTCCAGTAATGGTTTATGTAATTGTGGCATATAAATCGAGGGTGAGGTTGGATTTGATTGTTGGAATTTTAGGGTTTGATAAGAGTGATTTGTCCGTAAATAAAGTAGGTGTGATCGAATATGTATACTCTTTCACGATAGGAAGAATTCGATTATAAAGAGTGCATTTTTTGTTCATTTTTAAATTTTGGAGTTTTAAGGGTTCTATCTTCATTTTTTTTATATAAAATATAGGGTAGTATTTGCATATTTTAGTGGTTTTTGTTCATTGTTTAGGGTAACAATGAACATTGAAAATGATATTTATGATACTAGATCTACTATGTTTCCTATGATATAGTTAGTTCTGCATATAATGGTATGTATTGGAAAGGGCTTCCAGAATTGAATGTGGCTGCCTACTGATTTGAAGATGTTGCTACTCTCTCTCCGTCCAAATAATGCTTAAAAACGTTTTGGTTAGTGTTTGATTTTTTGACAAAGTAATTTTACCAATACCTACTTCAATTTTCAGGATTTTGATTGTAATTTTATGGTTTGGTTGTGTTGCGTTCAATCTTTAGGGTACTACGGACTTTTTAATTATTTTTTGTGATTTGGATAGTTATTGTGCTTTTTCGTGTTGTAGAGTTTGATCGGAAATATATTGTGTATTGATGCCGGAAACTGTTATGGAATTTAACACTCTAGATTTTTTTAGACGTAGTTCTAGGAATCAATCTGGAAAAGAGAAGAATAAAGCTGAAAGAAAAACGTCATTGGAGAAGTAAAGTTTAATGTTAGTTTAATTTGGAGCTTTGCCTTTGTTTTTAAGTTGATTTTCTATTTTTTCACATCAGTTTTATTCATAGCTAATGCATTACCTAGAATTGGAGTTACATGCTTGATTTTCTAGACGATTGAGGTAATGAACTGCATTTACAAATGATGGGAAATTGCTATGGAAGGTTGTTCTTCCTGGTTGGTTGTTATACTTGTAATAAGATAAACTATTTAGGGCTAGTCCTTTCTATATATAATTAGATACAAGTTTATGACTAGAAAATTGTCTTAATTCTTTAACATTTCTTACAAACTCCTAGAAATCAATCCAAATTCCTAGGCTGTGTTATGGCTTTTTTACACCAGAAGATAAGGGATTCATATACTAACTCTCATTTTAACGCAAATGGCCGTGAAGCCTTTTCAGATTGAGCACTTGTAATGGATCAAGAAGTCTTTAATCTATCCGGTCGATAACTTTGTGTCTAGGAAAGGTAGGGTTCGATATTCTCATGGTTTCCCCTCTTTTCTGCATCCTGCCTTCTATATATTTTCCCCGTCCTTGGTTATTATCACATTATATACATGAGGGATCATTGTGAATTATCGTAGCAACTGGTGGTATATTTCTTATAAAATCCTGTGATATGGATCTTTGTTTAAACTTTTAGTGATTGGTTGATATGTATGTTCCATAAGATGGCACATTTAACATTAAAACATGTTGTGCTCATGCAGCCTGTAGATTATAATTATTTGATAGATGAATTGAAATTGATCAATTTTTGTGAGATATACATTTTATCTAGATAAATAAATGACTAGATATGGACAAGATTGAAATGGAGAAGTAAAGACGACACATATTAATCTTGGTTGAATTCAGCAGTTCCCTATGCTTATTTTTATAATTTTGATGTCATATTTTCGGTACTAATTTGCAATTATTATTATTTTTAAATATTTACAATTATATTTTAAGCTCTTAGTGTATGCTGGTTGAGGAAGGATGACTGAAAAGGTTTGCATTTGTCTTAGTTTGCCTATATCGATTTTTTTTTTTTTTTGGTATAATGGTTAACAAAATGCCCTGAATAACAATGCACTTTTACAAACTCTGTAATTGCTAATGTGGAGTCTTATGATCTAGTTTGCTTTTAATAATTCTGGAACTAAGAAATGGTGGTTGCCCATTTGGATCAAACTTGAGTATGCTTTAGGTTGGCTGGGAATGAATGTTTCAAGGTATTTTTCATTAAACCTTTGATCATTGTATTAACAAAACAATGTTGCTACAAATCCTGTTCATTTAGATCCAGTTGAATATGAATGTTAAGAGATGGCCCTTTGAGTCACGAATGTTGATTATCTTCTACTTGGAAGCTCTTCTTGTACTCGTTTGATGTTTTATTGTACCCAAGTTTTGGACAAAAGGTGGTGTAAATATTTACACCTTATTTTTTATGCACTCAACTAGGACTTTACTAATGTAGTCAATATTTCATAATTTTAAGGAGCAAAGTTCTATGTATTGGAGGTGGAATGACAGATACATGGCAGTGAAGCTACTGTCACAGAAAGTGAGACTAAGGAGATGGACGGTCCAAGTTCAGGCGCAACTATGTAAGTGTGTCTTGTGATTGATTTGTAATTCTAAACTCAATATCGGTTTATTTGTATATTAAATATACCCTCTATCTTTAAGTTTCCATTTTGTTCATTTTTATAGGTTCTGTTTGATTTCATGAATCAATTGGAAGAAAGGAAGGCAGAAATGGAGTAACATAGACGTATGAGGATTGAATCTCATGGCATACAGATAACTAGTCTCTGGAATGTAATGTGTAGATATTTCCATAGGAGTTTTTACTTTGATAGCTAACTTGGTAGTGTTTCACTTTGTAAGCTTATTAAAGGGTAATGATAAATTACATGTATATACATTTTCAATATCAATAAAGTATCATTTCTTACTATCACGAATTATTTCTTATTAGGTTCACATAATTTTAGAAAAATATAAATTTGATTAGGTAGGATTTGTTGCTAATGGAGCCGTTGCAATAGGTACCAACAATATTTTTTTTACGATAAATTACCGTTGCATTTAGGGAAAAAAGCGTTGCATTATCTCATTAAGCCATCGTACATACCTGCCGCATTAGCTAAAACTTCCGTCACATTAGCTAAAATACCCATCGCATTAGCTAAAATATCCGTCGCATTAACTAAAATAACCGTCGCATTATCTAGAACTTTCATCGCATTAGCTAAATAACTAATGCGACACCCCAGCTAAGGACTGTCGCATTAGATGTCCACCTAATGCAACGGTAGTAATTTACCGTCGCATCAGCTCATTGATCGTTGCATTAGGCCTAATGCAACGCCACCGGATGCAAGGGTCATTTGTTGTCGCATTAGGTCTAATGCAACGGATTTCCATGCCTACTGCAACGATTTTAGGCGTCGCATCTGATTAGAAATGTAGTAGTGTTTCTCCACCATGGAAGCCAAATCCTCGTCATCGACATTTTCTCTGTGTTGGACTGAATTTGTGCATTGTGTAGATTTAATCGAAACAAATTAAATCGCAGTTTAATTATAAATTGTTGGAAATTTGTGCAATTATTAGGATAAGATTATGATTAAAATTTAGAAGTTGAAGAATAAATGAAGAGGACAAAGGAAGAAACAGGGGTTAGAGTTGGAAGAGGAGAGAGAAAGGAGTTGATGCTGGGATTTGGTTTACCCAGGCAACGATTTTGTTTCTTTTTAATTGATGATTAATTTCATGCCGTGAGATCAATATGTTATGTACGGTTGAGATCTCTTCTCATCCTTCTCATTATAAGGACCTTCTCATTGGAGGGGGACCTATATATATATATAAGGACGTCCTTTTAGGAATTCATTTGGTCCTTTAGGAACAGCCCTTCAAATTGCTAATTTTTTTTCATTTTACTATTTAATAACTCATAATCAGATCTTGGTAACTAATTATTTGCAACTTGACAATTTAAAACAAACCTTTCAACCATTTAAATTTCAATATTATTTAATCGATGAAAATGGAAGAATTTATAATCCCGATCCATGCAGTAACATCATTTTTAATCCATTCAAGTTGAATTGGTATTTTCTTCATTATCATTTTTGTGAAGAGACATCCACCAAAATTGATCTTGGACAATTTGTTTGTGAAAATGTATGTATAACCAAAAAAGGAACGCACCTAAAATCGGGTCAAGTTCTAATTGTTCAATTTGACTCTGTAGTAATAAGATTGGCTAAGCCTTATTTGGCTACTCCAGGAGCAACACTTCATGGTCATTATGGAGAAATCATTTATGAAGGGGATACATTAGTTACATTTATATATGAAAAATCGAGGTCTGGTGACATAACGCAAGGTCTTCCAAAAGTGGAACAAGTCTTAGAAGTTCGTTCGATTGATTCAATATCCATCAATCTAGAAAAGAGGATTGATAGTTGGAACGAACGTATAACAAGAATTCTTGGAAGTCCTTGGGGATTCTTGATTGGGGCTGAGCTAACTATAGCGCAAAGTCGTATTTCTTTGGTTAACAAGATCCAAAAGGTTTATCGATCACAAGGGGTGCAGATCCATAATAGACATATAGAAATTATTGTACGTCAAATAACATCAAAAGTCTTGGTTTCAGAAGATGGAATGTCTAATGTTTTTTTCCCGGAGAACTAA

mRNA sequence

ATGAGAAAGATCTTAAAGATACATGGCAGTGAAGCTACTGTCACAGAAAGTGAGACTAAGGAGATGGACGGTCCAAGTTCAGGCGCAACTATATTGGCTAAGCCTTATTTGGCTACTCCAGGAGCAACACTTCATGGTCATTATGGAGAAATCATTTATGAAGGGGATACATTAGTTACATTTATATATGAAAAATCGAGGTCTGGTGACATAACGCAAGGTCTTCCAAAAGTGGAACAAGTCTTAGAAGTTCGTTCGATTGATTCAATATCCATCAATCTAGAAAAGAGGATTGATAGTTGGAACGAACGTATAACAAGAATTCTTGGAAGTCCTTGGGGATTCTTGATTGGGGCTGAGCTAACTATAGCGCAAAGTCGTATTTCTTTGGTTAACAAGATCCAAAAGGTTTATCGATCACAAGGGGTGCAGATCCATAATAGACATATAGAAATTATTGTACGTCAAATAACATCAAAAGTCTTGGTTTCAGAAGATGGAATGTCTAATGTTTTTTTCCCGGAGAACTAA

Coding sequence (CDS)

ATGAGAAAGATCTTAAAGATACATGGCAGTGAAGCTACTGTCACAGAAAGTGAGACTAAGGAGATGGACGGTCCAAGTTCAGGCGCAACTATATTGGCTAAGCCTTATTTGGCTACTCCAGGAGCAACACTTCATGGTCATTATGGAGAAATCATTTATGAAGGGGATACATTAGTTACATTTATATATGAAAAATCGAGGTCTGGTGACATAACGCAAGGTCTTCCAAAAGTGGAACAAGTCTTAGAAGTTCGTTCGATTGATTCAATATCCATCAATCTAGAAAAGAGGATTGATAGTTGGAACGAACGTATAACAAGAATTCTTGGAAGTCCTTGGGGATTCTTGATTGGGGCTGAGCTAACTATAGCGCAAAGTCGTATTTCTTTGGTTAACAAGATCCAAAAGGTTTATCGATCACAAGGGGTGCAGATCCATAATAGACATATAGAAATTATTGTACGTCAAATAACATCAAAAGTCTTGGTTTCAGAAGATGGAATGTCTAATGTTTTTTTCCCGGAGAACTAA

Protein sequence

MRKILKIHGSEATVTESETKEMDGPSSGATILAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISINLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFFPEN
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo19561Spo19561gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo19561.1Spo19561.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo19561.1.exon.1Spo19561.1.exon.1exon
Spo19561.1.exon.2Spo19561.1.exon.2exon
Spo19561.1.exon.3Spo19561.1.exon.3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo19561.1.CDS.1Spo19561.1.CDS.1CDS
Spo19561.1.CDS.2Spo19561.1.CDS.2CDS
Spo19561.1.CDS.3Spo19561.1.CDS.3CDS


Homology
[Close]
BLAST of Spo19561.1 vs. NCBI nr
Match: gi|126022792|ref|NP_054922.2| (RNA polymerase beta'' subunit [Spinacia oleracea])

HSP 1 Score: 280.8 bits (717), Expect = 1.600e-72
Identity = 141/142 (99.30%), Postives = 141/142 (99.30%), Query Frame = 1 

		  

Query: 33   AKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISI 92
            AKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISI
Sbjct: 1088 AKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISI 1147

Query: 93   NLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEI 152
            NLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEI
Sbjct: 1148 NLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEI 1207

Query: 153  IVRQITSKVLVSEDGMSNVFFP 175
            IVRQITSKVLVSEDGMSNVF P
Sbjct: 1208 IVRQITSKVLVSEDGMSNVFLP 1229
[Close]
BLAST of Spo19561.1 vs. NCBI nr
Match: gi|133448|sp|P11704.1|RPOC2_SPIOL (RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName: Full=PEP; AltName: Full=Plastid-encoded RNA polymerase subunit beta''; Short=RNA polymerase subunit beta'' (chloroplast) [Spinacia oleracea])

HSP 1 Score: 280.8 bits (717), Expect = 1.600e-72
Identity = 141/142 (99.30%), Postives = 141/142 (99.30%), Query Frame = 1 

		  

Query: 33   AKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISI 92
            AKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISI
Sbjct: 1092 AKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISI 1151

Query: 93   NLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEI 152
            NLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEI
Sbjct: 1152 NLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEI 1211

Query: 153  IVRQITSKVLVSEDGMSNVFFP 175
            IVRQITSKVLVSEDGMSNVF P
Sbjct: 1212 IVRQITSKVLVSEDGMSNVFLP 1233
[Close]
BLAST of Spo19561.1 vs. NCBI nr
Match: gi|90403635|gb|ABD93711.1| (RNA polymerase beta chain, partial (chloroplast) [Spinacia oleracea])

HSP 1 Score: 280.8 bits (717), Expect = 1.600e-72
Identity = 141/142 (99.30%), Postives = 141/142 (99.30%), Query Frame = 1 

		  

Query: 33  AKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISI 92
           AKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISI
Sbjct: 630 AKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISI 689

Query: 93  NLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEI 152
           NLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEI
Sbjct: 690 NLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEI 749

Query: 153 IVRQITSKVLVSEDGMSNVFFP 175
           IVRQITSKVLVSEDGMSNVF P
Sbjct: 750 IVRQITSKVLVSEDGMSNVFLP 771
[Close]
BLAST of Spo19561.1 vs. NCBI nr
Match: gi|937546352|ref|YP_009169346.1| (RNA polymerase beta'' subunit (chloroplast) [Clematis terniflora])

HSP 1 Score: 272.7 bits (696), Expect = 4.500e-70
Identity = 135/142 (95.07%), Postives = 140/142 (98.59%), Query Frame = 1 

		  

Query: 33   AKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISI 92
            AKPYLATPGAT+HGHYGEI+YEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSIS+
Sbjct: 1099 AKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISM 1158

Query: 93   NLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEI 152
            NLEKR++SWNERITRILG PWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEI
Sbjct: 1159 NLEKRVESWNERITRILGIPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEI 1218

Query: 153  IVRQITSKVLVSEDGMSNVFFP 175
            IVRQITSKVLVSEDGMSNVF P
Sbjct: 1219 IVRQITSKVLVSEDGMSNVFSP 1240
[Close]
BLAST of Spo19561.1 vs. NCBI nr
Match: gi|844170325|gb|AKM98248.1| (RNA polymerase beta subunit-2 (chloroplast) [Pulsatilla pratensis])

HSP 1 Score: 272.7 bits (696), Expect = 4.500e-70
Identity = 135/142 (95.07%), Postives = 140/142 (98.59%), Query Frame = 1 

		  

Query: 33   AKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISI 92
            AKPYLATPGAT+HGHYGEI+YEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSIS+
Sbjct: 1101 AKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISM 1160

Query: 93   NLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEI 152
            NLEKR++SWNERITRILG PWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEI
Sbjct: 1161 NLEKRVESWNERITRILGIPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEI 1220

Query: 153  IVRQITSKVLVSEDGMSNVFFP 175
            IVRQITSKVLVSEDGMSNVF P
Sbjct: 1221 IVRQITSKVLVSEDGMSNVFSP 1242
[Close]
BLAST of Spo19561.1 vs. UniProtKB/TrEMBL
Match: A1XK05_SPIOL (RNA polymerase beta chain (Fragment) OS=Spinacia oleracea GN=rpoC2 PE=4 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 1.100e-72
Identity = 141/142 (99.30%), Postives = 141/142 (99.30%), Query Frame = 1 

		  

Query: 33  AKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISI 92
           AKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISI
Sbjct: 630 AKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISI 689

Query: 93  NLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEI 152
           NLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEI
Sbjct: 690 NLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEI 749

Query: 153 IVRQITSKVLVSEDGMSNVFFP 175
           IVRQITSKVLVSEDGMSNVF P
Sbjct: 750 IVRQITSKVLVSEDGMSNVFLP 771
[Close]
BLAST of Spo19561.1 vs. UniProtKB/TrEMBL
Match: A0A0M3LBE2_CLETE (DNA-directed RNA polymerase subunit beta'' OS=Clematis terniflora GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 3.100e-70
Identity = 135/142 (95.07%), Postives = 140/142 (98.59%), Query Frame = 1 

		  

Query: 33   AKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISI 92
            AKPYLATPGAT+HGHYGEI+YEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSIS+
Sbjct: 1099 AKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISM 1158

Query: 93   NLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEI 152
            NLEKR++SWNERITRILG PWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEI
Sbjct: 1159 NLEKRVESWNERITRILGIPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEI 1218

Query: 153  IVRQITSKVLVSEDGMSNVFFP 175
            IVRQITSKVLVSEDGMSNVF P
Sbjct: 1219 IVRQITSKVLVSEDGMSNVFSP 1240
[Close]
BLAST of Spo19561.1 vs. UniProtKB/TrEMBL
Match: A0A0H3Y3A9_9MAGN (DNA-directed RNA polymerase subunit beta'' OS=Anemone patens GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 3.100e-70
Identity = 135/142 (95.07%), Postives = 140/142 (98.59%), Query Frame = 1 

		  

Query: 33   AKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISI 92
            AKPYLATPGAT+HGHYGEI+YEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSIS+
Sbjct: 1099 AKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISM 1158

Query: 93   NLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEI 152
            NLEKR++SWNERITRILG PWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEI
Sbjct: 1159 NLEKRVESWNERITRILGIPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEI 1218

Query: 153  IVRQITSKVLVSEDGMSNVFFP 175
            IVRQITSKVLVSEDGMSNVF P
Sbjct: 1219 IVRQITSKVLVSEDGMSNVFSP 1240
[Close]
BLAST of Spo19561.1 vs. UniProtKB/TrEMBL
Match: A0A0H3Y388_9MAGN (DNA-directed RNA polymerase subunit beta'' OS=Pulsatilla vernalis GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 3.100e-70
Identity = 135/142 (95.07%), Postives = 140/142 (98.59%), Query Frame = 1 

		  

Query: 33   AKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISI 92
            AKPYLATPGAT+HGHYGEI+YEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSIS+
Sbjct: 1099 AKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISM 1158

Query: 93   NLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEI 152
            NLEKR++SWNERITRILG PWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEI
Sbjct: 1159 NLEKRVESWNERITRILGIPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEI 1218

Query: 153  IVRQITSKVLVSEDGMSNVFFP 175
            IVRQITSKVLVSEDGMSNVF P
Sbjct: 1219 IVRQITSKVLVSEDGMSNVFSP 1240
[Close]
BLAST of Spo19561.1 vs. UniProtKB/TrEMBL
Match: H6T9I2_9CARY (DNA-directed RNA polymerase beta' chain (Fragment) OS=Didierea madagascariensis GN=rpoC2 PE=4 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 3.100e-70
Identity = 136/142 (95.77%), Postives = 138/142 (97.18%), Query Frame = 1 

		  

Query: 33  AKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISI 92
           AKPYLATPGAT+HGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSIS+
Sbjct: 630 AKPYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISM 689

Query: 93  NLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEI 152
           NLEKRID WNE ITRILG PWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEI
Sbjct: 690 NLEKRIDGWNEHITRILGIPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEI 749

Query: 153 IVRQITSKVLVSEDGMSNVFFP 175
           IVRQITSKVLVSEDGMSNVF P
Sbjct: 750 IVRQITSKVLVSEDGMSNVFLP 771
[Close]
BLAST of Spo19561.1 vs. ExPASy Swiss-Prot
Match: RPOC2_SPIOL (DNA-directed RNA polymerase subunit beta'' OS=Spinacia oleracea GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 1.000e-74
Identity = 141/142 (99.30%), Postives = 141/142 (99.30%), Query Frame = 1 

		  

Query: 33   AKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISI 92
            AKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISI
Sbjct: 1092 AKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISI 1151

Query: 93   NLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEI 152
            NLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEI
Sbjct: 1152 NLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEI 1211

Query: 153  IVRQITSKVLVSEDGMSNVFFP 175
            IVRQITSKVLVSEDGMSNVF P
Sbjct: 1212 IVRQITSKVLVSEDGMSNVFLP 1233
[Close]
BLAST of Spo19561.1 vs. ExPASy Swiss-Prot
Match: RPOC2_CHLSC (DNA-directed RNA polymerase subunit beta'' OS=Chloranthus spicatus GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 2.400e-71
Identity = 133/142 (93.66%), Postives = 139/142 (97.89%), Query Frame = 1 

		  

Query: 33   AKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISI 92
            AKP+LATPGAT+HGHYGEI+YEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISI
Sbjct: 1103 AKPHLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISI 1162

Query: 93   NLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEI 152
            NLEKR++ WNERITRI+G PWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEI
Sbjct: 1163 NLEKRVEGWNERITRIIGIPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEI 1222

Query: 153  IVRQITSKVLVSEDGMSNVFFP 175
            IVRQITSKVLVSEDGMSNVF P
Sbjct: 1223 IVRQITSKVLVSEDGMSNVFSP 1244
[Close]
BLAST of Spo19561.1 vs. ExPASy Swiss-Prot
Match: RPOC2_NANDO (DNA-directed RNA polymerase subunit beta'' OS=Nandina domestica GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 3.100e-71
Identity = 132/142 (92.96%), Postives = 139/142 (97.89%), Query Frame = 1 

		  

Query: 33   AKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISI 92
            AKPYLATPGAT+HGHYGEI+Y+GDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSIS+
Sbjct: 1093 AKPYLATPGATVHGHYGEILYKGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISM 1152

Query: 93   NLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEI 152
            NLEKR++ WNERITRILG PWGFLIGAELTIAQSR+SLVNKIQKVYRSQGVQIHNRHIEI
Sbjct: 1153 NLEKRVEGWNERITRILGIPWGFLIGAELTIAQSRVSLVNKIQKVYRSQGVQIHNRHIEI 1212

Query: 153  IVRQITSKVLVSEDGMSNVFFP 175
            IVRQITSKVLVSEDGMSNVF P
Sbjct: 1213 IVRQITSKVLVSEDGMSNVFSP 1234
[Close]
BLAST of Spo19561.1 vs. ExPASy Swiss-Prot
Match: RPOC2_POPAL (DNA-directed RNA polymerase subunit beta'' OS=Populus alba GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 5.300e-71
Identity = 133/143 (93.01%), Postives = 139/143 (97.20%), Query Frame = 1 

		  

Query: 32   LAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSIS 91
            LAKPYLATPGAT+HGHYGEI+YEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSIS
Sbjct: 1105 LAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSIS 1164

Query: 92   INLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIE 151
            INLEKR+++WNE ITRI+G PWGFLIGAELTI QSRISLVNKIQKVYRSQGVQIHNRHIE
Sbjct: 1165 INLEKRVENWNECITRIVGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIE 1224

Query: 152  IIVRQITSKVLVSEDGMSNVFFP 175
            IIVRQITSKVLVSEDGMSNVF P
Sbjct: 1225 IIVRQITSKVLVSEDGMSNVFSP 1247
[Close]
BLAST of Spo19561.1 vs. ExPASy Swiss-Prot
Match: RPOC2_POPTR (DNA-directed RNA polymerase subunit beta'' OS=Populus trichocarpa GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 5.300e-71
Identity = 133/143 (93.01%), Postives = 139/143 (97.20%), Query Frame = 1 

		  

Query: 32   LAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSIS 91
            LAKPYLATPGAT+HGHYGEI+YEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSIS
Sbjct: 1105 LAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSIS 1164

Query: 92   INLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIE 151
            INLEKR+++WNE ITRI+G PWGFLIGAELTI QSRISLVNKIQKVYRSQGVQIHNRHIE
Sbjct: 1165 INLEKRVENWNECITRIVGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIE 1224

Query: 152  IIVRQITSKVLVSEDGMSNVFFP 175
            IIVRQITSKVLVSEDGMSNVF P
Sbjct: 1225 IIVRQITSKVLVSEDGMSNVFSP 1247
[Close]
BLAST of Spo19561.1 vs. TAIR (Arabidopsis)
Match: ATCG00170.1 (DNA-directed RNA polymerase family protein)

HSP 1 Score: 259.2 bits (661), Expect = 1.800e-69
Identity = 129/142 (90.85%), Postives = 134/142 (94.37%), Query Frame = 1 

		  

Query: 33   AKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISI 92
            AKPYLATPGA +HGHY EI+YEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSIS+
Sbjct: 1099 AKPYLATPGAKVHGHYSEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISL 1158

Query: 93   NLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEI 152
            NLEKRI  WN+ ITRILG PWGFLIGAELTI QSRISLVNKIQKVYRSQGVQIHNRHIEI
Sbjct: 1159 NLEKRIKGWNKCITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEI 1218

Query: 153  IVRQITSKVLVSEDGMSNVFFP 175
            IVRQITSKVLVSE+GMSNVF P
Sbjct: 1219 IVRQITSKVLVSEEGMSNVFLP 1240
The following BLAST results are available for this feature:
BLAST of Spo19561.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|126022792|ref|NP_054922.2|1.6e-7299.3RNA polymerase beta'' subunit ... [more]
gi|133448|sp|P11704.1|RPOC2_SPIOL1.6e-7299.3RecName: Full=DNA-directed RNA... [more]
gi|90403635|gb|ABD93711.1|1.6e-7299.3RNA polymerase beta chain, par... [more]
gi|937546352|ref|YP_009169346.1|4.5e-7095.0RNA polymerase beta'' subunit ... [more]
gi|844170325|gb|AKM98248.1|4.5e-7095.0RNA polymerase beta subunit-2 ... [more]
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BLAST of Spo19561.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A1XK05_SPIOL1.1e-7299.3RNA polymerase beta chain (Fra... [more]
A0A0M3LBE2_CLETE3.1e-7095.0DNA-directed RNA polymerase su... [more]
A0A0H3Y3A9_9MAGN3.1e-7095.0DNA-directed RNA polymerase su... [more]
A0A0H3Y388_9MAGN3.1e-7095.0DNA-directed RNA polymerase su... [more]
H6T9I2_9CARY3.1e-7095.7DNA-directed RNA polymerase be... [more]
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BLAST of Spo19561.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RPOC2_SPIOL1.0e-7499.3DNA-directed RNA polymerase su... [more]
RPOC2_CHLSC2.4e-7193.6DNA-directed RNA polymerase su... [more]
RPOC2_NANDO3.1e-7192.9DNA-directed RNA polymerase su... [more]
RPOC2_POPAL5.3e-7193.0DNA-directed RNA polymerase su... [more]
RPOC2_POPTR5.3e-7193.0DNA-directed RNA polymerase su... [more]
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BLAST of Spo19561.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
ATCG00170.11.8e-6990.8DNA-directed RNA polymerase fa... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007081RNA polymerase Rpb1, domain 5PFAMPF04998RNA_pol_Rpb1_5coord: 121..163
score: 5.
NoneNo IPR availablePANTHERPTHR19376DNA-DIRECTED RNA POLYMERASEcoord: 31..163
score: 2.5
NoneNo IPR availablePANTHERPTHR19376:SF38DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA''coord: 31..163
score: 2.5
NoneNo IPR availableunknownSSF64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 34..163
score: 1.13

GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0009507 chloroplast
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005730 nucleolus
cellular_component GO:0015935 small ribosomal subunit
molecular_function GO:0003677 DNA binding
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
molecular_function GO:0008777 acetylornithine deacetylase activity
molecular_function GO:0003735 structural constituent of ribosome