Spo18399.1 (mRNA)

Overview
NameSpo18399.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSuper_scaffold_27 : 1647860 .. 1650039 (-)
Sequence length948
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCATAATCTTTCTCTCTCCTCTAAGTTCCTCCCTCTGTGAAACCCTAAAACTTGAAGACTTCAATGGCATACATTCACGGAGGCGGCTAATGTCTCGGCTATTGCACCATGACTCCAGCACGACCCTGCAAATACGGAAGGGTTTCGACGGGTGGTCATCTTGGGGGATCTGGCTGTTCGATTTGCGAGTGGAGGTTGACGAAGCGTTTATGTCGCCTCAGATTTCCCTCTCTCTCTCCTCTCCCATGTCAACGGCAATTCATTTCTGCTATTTCATATATTATCAATTTGATTCCAACACTAAATCAGTTGAATTTCTAATTGCGATTCTAAAAATTGAAGATTTAAACTTGATATAAATGTGTAGGAGATGGTAAATTGGTAATCATGATATCAAAGTAGTTGCTGCTTATTATTTTAAGAACTTGATTCAACGGAATGTTCATGGAGAAGGTCGATCTGGCTTTTATAGTCAGGAATTTAAGGAGATGCTATTGAAAACTGGGCTTGGTATTGAACCCATTGAATTGAATTGTTTGATAATTTTTTCTCTAGGAAATTTGGGTTTGTTCTTAATTCGGAGTTGTTTGTGGGTGATGGGTTTTGTTTCGATAATTTGGAGATAGATGTAGAGCTCAAAACCCTAACAGAGGAATCTCTAGAGATTTATTTTCGTTTTGTGATTATTTTCAGGCATGTAGTTCTGCCATGGAAATTCCGCGACCTTCTACATGGAAATCGAAACATGGAAATCGAAGCCTTCCAAACACAAAAGTGGTGAATTACTGCAATTAAGTTTATGATCTGATTAAGGTGATAATCAATTAAAACGCAATATAGTTTAGTTTAATTTCTTGCATATTTCAGTTTAAGCGCACTGATTATGCTTTGTTAATTAGAACCCTATTAATTTCTTGATTCTTTAACCTTGGACTGTTTATGCTTTGTTTGAACTCTATTAATTTTTGGATTCTTTATTTTTGCACTGATTATGCTTTGTTAGAACTCTGTTAAGGGTTACAGTAATGTCGAATTTATCTTTATAGCCCAGACTCGAGAGTATGTGTATGAAATTGATAATTGTCCGAAATTTTAATTTGTTTATTTCCGGTAATTCAAGGAGGCTCGATGCGTACATATCCGTTATAAAGCTAGGGAGATCGAGGGTTCATGATTTTTTTGTTTGATTTGGTTAAATCTTAGAAATTTGATAAGTTATCTACAATTTTTTTTCCAGCTGCAATGGTACGCTATGAAATAACATGAAATTTCCTTGGCCTTCAATTCCTGCAGTTACTATACCGGTGAGAATATAATTCTTTTACCTTTTGCATTACTTATGTAAGTGTGCGGTTAATCCTGTCGCTCTTCCCTGAACAAATTCAGTTACTTTTGTAGATTGGATATGATGAAGCAGGGTTGCCTATCGGTCTACAATTTATCGGAAAACCTTAGGCTGAAGCAACATTAATTCACATGGCTTCTGCAGTCCAGGTAAACCTTCATGTTTTCAAGAACCCGTCTTGAAAAACTGTTACGGTCTTGCCATGATTTTACCAAAATAACTTTCTCATAATTGTCTCCTTCCAAATTTATCTCTGAACTTTTGAATTAATTTTTTGCTTTCTGATTTTTTGCGTGATTATTTTCTTTCCTTTGGTGTATTTATAAGGTGAATAAATTGTTCAAAGGTGCACCATTGCAGCATCTTAAGAATGTCTCAAAATCTGACTCCAAAAATGACATCTTACTTCGGAATATGCTTACAGGTCGATCGGACTTGGGATAATCATGCACTGAGAGAACCAGCTTTAGTTGCTCACTTAAAGTAATCCAGGATTTTTGGCTACGTTATTGAGAAACCCAATTTCTTCACTTTTACTTGGTTGGCAAAATTAGAATCACATACATCTTGGAGCATTCTGCAACTACTGGTAAACAATTCCTCACTCACAACTCATTACCTGCCATTTGACAAAATTTATGACACGGAGGATTTTATTTGAATCAATGCAAACTTCACTTAGTAAAAGGGCTCCGTTCACTTATATCAAGCTGAAAGTTTAATTTTGACACGAGTGAACTATGATTTTGCCGGGTTAGTATTATTGACTGTATTTTGCCGTTCAATTTCCCAATTTCAATTTTTAATGGGTGATTAATAGTTGTGAATATATGTG

mRNA sequence

CCATAATCTTTCTCTCTCCTCTAAGTTCCTCCCTCTGTGAAACCCTAAAACTTGAAGACTTCAATGGCATACATTCACGGAGGCGGCTAATGTCTCGGCTATTGCACCATGACTCCAGCACGACCCTGCAAATACGGAAGGGTTTCGACGGGTGGTCATCTTGGGGGATCTGGCTGTTCGATTTGCGAGTGGAGGTTGACGAAGCGTTTATGTCGCCTCAGATTTCCCTCTCTCTCTCCTCTCCCATGTCAACGGCATGTAGTTCTGCCATGGAAATTCCGCGACCTTCTACATGGAAATCGAAACATGGAAATCGAAGCCTTCCAAACACAAAAGTGGTGAATTACTGCAATTAAGTTTATGATCTGATTAAGCTGCAATGGTACGCTATGAAATAACATGAAATTTCCTTGGCCTTCAATTCCTGCAGTTACTATACCGATTGGATATGATGAAGCAGGGTTGCCTATCGGTCTACAATTTATCGGAAAACCTTAGGCTGAAGCAACATTAATTCACATGGCTTCTGCAGTCCAGGTCGATCGGACTTGGGATAATCATGCACTGAGAGAACCAGCTTTAGTTGCTCACTTAAAGTAATCCAGGATTTTTGGCTACGTTATTGAGAAACCCAATTTCTTCACTTTTACTTGGTTGGCAAAATTAGAATCACATACATCTTGGAGCATTCTGCAACTACTGGTAAACAATTCCTCACTCACAACTCATTACCTGCCATTTGACAAAATTTATGACACGGAGGATTTTATTTGAATCAATGCAAACTTCACTTAGTAAAAGGGCTCCGTTCACTTATATCAAGCTGAAAGTTTAATTTTGACACGAGTGAACTATGATTTTGCCGGGTTAGTATTATTGACTGTATTTTGCCGTTCAATTTCCCAATTTCAATTTTTAATGGGTGATTAATAGTTGTGAATATATGTG

Coding sequence (CDS)

ATGTCTCGGCTATTGCACCATGACTCCAGCACGACCCTGCAAATACGGAAGGGTTTCGACGGGTGGTCATCTTGGGGGATCTGGCTGTTCGATTTGCGAGTGGAGGTTGACGAAGCGTTTATGTCGCCTCAGATTTCCCTCTCTCTCTCCTCTCCCATGTCAACGGCATGTAGTTCTGCCATGGAAATTCCGCGACCTTCTACATGGAAATCGAAACATGGAAATCGAAGCCTTCCAAACACAAAAGTGGTGAATTACTGCAATTAA

Protein sequence

MSRLLHHDSSTTLQIRKGFDGWSSWGIWLFDLRVEVDEAFMSPQISLSLSSPMSTACSSAMEIPRPSTWKSKHGNRSLPNTKVVNYCN
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo18399Spo18399gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo18399.1Spo18399.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo18399.1.utr5p.1Spo18399.1.utr5p.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo18399.1.CDS.2Spo18399.1.CDS.2CDS
Spo18399.1.CDS.1Spo18399.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo18399.1.utr3p.4Spo18399.1.utr3p.4three_prime_UTR
Spo18399.1.utr3p.3Spo18399.1.utr3p.3three_prime_UTR
Spo18399.1.utr3p.2Spo18399.1.utr3p.2three_prime_UTR
Spo18399.1.utr3p.1Spo18399.1.utr3p.1three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo18399.1.exon.5Spo18399.1.exon.5exon
Spo18399.1.exon.4Spo18399.1.exon.4exon
Spo18399.1.exon.3Spo18399.1.exon.3exon
Spo18399.1.exon.2Spo18399.1.exon.2exon
Spo18399.1.exon.1Spo18399.1.exon.1exon


Homology
The following BLAST results are available for this feature:
BLAST of Spo18399.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo18399.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo18399.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo18399.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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