Spo25439.1 (mRNA) | SpinachBase

Overview


Name	Spo25439.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Photosystem II reaction center PsbP family protein
Location	Super_scaffold_45 : 1298115 .. 1300809 (-)
Sequence length	1470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGATGAGTGCACGAGTAAAAGTTATGTGAGTTTAGCCACCCAATCACTTGTTGGCTTGTTGCAATATTTTTCCTAAAAATAAAGAAGTTTTGGAAGTGGGCCACTTTTTTATGCTGACCACAAAGCAAATTAACAACTGCAAGATGGACCAAGAATATGATATCCCAAAGCTCCCTAACAAAATTACTTAGAGAGTAAGGATGATGATGGCAGCCTCAGGGAGCACATCCACAACCTCATTGCTCCGGCAGCGCACTCTCTCCTCCTCCTTCCCCTTCTCTTCTCGTGTTCGAACTTCAGGTCTTAAGTCCTAACCTTAATATATCCGCTTTGTCATTATATTGTATAACAAAAAAAGAAAAAAGCAAAGTCAATTGATTGAAGATTCTGATAATATTTGCATTTGGATTGATATTTTTACAGGCAGGCTAAGCTTTATAACTCGAAAGCAGCCTGTTATCTTCTGTTCTCTCCCAAAGACTCAACAAACCACAGCAACAGAACATGGAGTGGAAAGTAGTAGCACTAGAAGAAGAGAAGCAATGCTTCAGATAGCCTTCTCTGCAGTTTTCCAAGTTGCCACTGCTGCTGCTGTTTCTTCACCTGCAGTAGCACTTGACGGTTAGGGAAAAAGACTAACCCTTTATCAGCTCATGTCCAATATATATTCAGGGACAACTTTATACTTTAATTTATTACCAATTGGCTTATTCTCCATGTTCCTGCAGAATTTCGAGTCTATTCTGACGATGCTAACAAGTACAAGATTTCTATCCCTCAAGGTAAAATCTGACTTTTAACAGTAGACTTTGAGTATAACATAAACTTTATCCTGTATAGGAAAAAATATACACATCGAGTGCTATTAGCCTTATTACTAAGTTGATTGCAAACGAAGATGAAATAAATCAGGATATCATGTCTACTAGTTAACACTCTTGATACTTCTTAAGTTTTTTAAGGACATTTATGAATTACACAGGGCCCTGGTGATTACCACCAGGCCAAGACTTCATTGGTTTGGTACTTCTAAGAGCAATAGAAAGACAACATAGCTTCTATAGTTGATGCTAATAACAATAGTTGCCTTATCTAACCATGCAGATTGGCAAGTCGGAGTTGGGGAAACTGACGGAATCAAATCTATTACAGCATTTTACCCAGAGGCTTCTACTTCAAATGGTAGCTTTCTGCTTGAAACTTTTTGTTCCAATAACTAATGAGCATGAAAACGTAATTTTGTTACCTGTGAACGACTTCTGCAGTCAGTGTGGCAATCACAGGAATTGGTCCTGATTTTACCAAATTGGAATCTTTTGGCAACGTTGATACTTTTGCAGAAAATCTGGTAATCACCATATTAGCATATTTCATCAGCATTCTTCACTTACTGTTAATGGGCGCTATCTATCGGTAATTTTTCTGACTTGAGGTATCTGATAATTACAAAATTGATCAGGTTAATGGATTGGATAGAAGTTGGCAGAGGCCTCCTGGAATTGCAGCAAAACTCATAGACTGTAAATCTAAAAATGGTAACTATCTACTTTCCTCTTTTAGTGTACACAAGAATAGGGCTCGTTCTTTTCACCTTAAAAAAATACCATACTTTATAAGTTTCAGAAGAAAAGCAGTTCAATAATGGCTTTTCAGATGAAAAGAACGAATCCCTATGAAGGCCACTAGCTAGGTAGGATATGCAATACTCCGTAAACCAAACATGTCTATAGTCATTAAACTTACCTTTTTTCTTCTTTGGGACTGGCCAGGACTTTATTATGTTGAGTACACGCTCCAAAATCCTGGGGAAAGTCGCAGGCACATCTATTCTGCAACCGGGATGGCGCAAAATGGCTGGTATAACAGGCTTTATACAGTAACTGGACAGGTTAACTTCACTTCACTTCACTTGGCTTTGCTCAATGCTCATCTGAAAAACTGCAGGCAACAGATGCATTTCTGCATTCCTGTTAATTGCTAAACAAAATACTACTCGTAGGAAGCTAAAGTTATTATTATTTTTTGCATACATTGCAGTTTGTGGAAGATGACTCTGATAAATTTGGATCCAAGATTCAAAAGGTATGTCAAACCCCATCAACCTTCATTCAGCTATTGGTATTCTGGGAAAAATGATCTGCTAAAACCTTAACCTTGTGTTTTAACCTTCTTTTGCAGGCTGTGCAATCGTTCAAATTAGGCTGAAGAGAGAAACTCGCTACACAGGAACAGCTGATGCTGTCAGTAACCTTGTACATGAAGGGCCAGGGCTGTGCTCTTTAGGCAATCCTAAAATCTTCTTATAAGCATCCTTTCTCTTTCACAATATAATACCTCGAATCAATTTTGAGAATATCACCCAACTGCTGCAAAATTTTGCCACTCACACTGTTTGCCCAACAGCATCACATTTTTGTTTATACTTGAAGCTAAGAAATTCTTCAGATAAATGTATATTGAAACTTCAAACTACTAATACTACACTAAAATGCTTCTTGTCAAAGCAGTAAACCGCCAATTCAGCTAATGCTACTTTTGCTTAATTGCGCTAACAAGACAAAGATCTACTGGTTGTTGTGTGGAGTATTTCACAAGATCCCTGCATGTTTATTGTTTTACTGTAGACGATCAGCACGCTATTTTAATTCAAAGTTAAAGGGGTAAAAAAGAGTAGACTAAATAGCTAACATATTAG

mRNA sequence

GGATGAGTGCACGAGTAAAAGTTATGTGAGTTTAGCCACCCAATCACTTGTTGGCTTGTTGCAATATTTTTCCTAAAAATAAAGAAGTTTTGGAAGTGGGCCACTTTTTTATGCTGACCACAAAGCAAATTAACAACTGCAAGATGGACCAAGAATATGATATCCCAAAGCTCCCTAACAAAATTACTTAGAGAGTAAGGATGATGATGGCAGCCTCAGGGAGCACATCCACAACCTCATTGCTCCGGCAGCGCACTCTCTCCTCCTCCTTCCCCTTCTCTTCTCGTGTTCGAACTTCAGGCAGGCTAAGCTTTATAACTCGAAAGCAGCCTGTTATCTTCTGTTCTCTCCCAAAGACTCAACAAACCACAGCAACAGAACATGGAGTGGAAAGTAGTAGCACTAGAAGAAGAGAAGCAATGCTTCAGATAGCCTTCTCTGCAGTTTTCCAAGTTGCCACTGCTGCTGCTGTTTCTTCACCTGCAGTAGCACTTGACGAATTTCGAGTCTATTCTGACGATGCTAACAAGTACAAGATTTCTATCCCTCAAGATTGGCAAGTCGGAGTTGGGGAAACTGACGGAATCAAATCTATTACAGCATTTTACCCAGAGGCTTCTACTTCAAATGTCAGTGTGGCAATCACAGGAATTGGTCCTGATTTTACCAAATTGGAATCTTTTGGCAACGTTGATACTTTTGCAGAAAATCTGGTTAATGGATTGGATAGAAGTTGGCAGAGGCCTCCTGGAATTGCAGCAAAACTCATAGACTGTAAATCTAAAAATGGACTTTATTATGTTGAGTACACGCTCCAAAATCCTGGGGAAAGTCGCAGGCACATCTATTCTGCAACCGGGATGGCGCAAAATGGCTGGTATAACAGGCTTTATACAGTAACTGGACAGTTTGTGGAAGATGACTCTGATAAATTTGGATCCAAGATTCAAAAGGCTGTGCAATCGTTCAAATTAGGCTGAAGAGAGAAACTCGCTACACAGGAACAGCTGATGCTGTCAGTAACCTTGTACATGAAGGGCCAGGGCTGTGCTCTTTAGGCAATCCTAAAATCTTCTTATAAGCATCCTTTCTCTTTCACAATATAATACCTCGAATCAATTTTGAGAATATCACCCAACTGCTGCAAAATTTTGCCACTCACACTGTTTGCCCAACAGCATCACATTTTTGTTTATACTTGAAGCTAAGAAATTCTTCAGATAAATGTATATTGAAACTTCAAACTACTAATACTACACTAAAATGCTTCTTGTCAAAGCAGTAAACCGCCAATTCAGCTAATGCTACTTTTGCTTAATTGCGCTAACAAGACAAAGATCTACTGGTTGTTGTGTGGAGTATTTCACAAGATCCCTGCATGTTTATTGTTTTACTGTAGACGATCAGCACGCTATTTTAATTCAAAGTTAAAGGGGTAAAAAAGAGTAGACTAAATAGCTAACATATTAG

Coding sequence (CDS)

ATGATGATGGCAGCCTCAGGGAGCACATCCACAACCTCATTGCTCCGGCAGCGCACTCTCTCCTCCTCCTTCCCCTTCTCTTCTCGTGTTCGAACTTCAGGCAGGCTAAGCTTTATAACTCGAAAGCAGCCTGTTATCTTCTGTTCTCTCCCAAAGACTCAACAAACCACAGCAACAGAACATGGAGTGGAAAGTAGTAGCACTAGAAGAAGAGAAGCAATGCTTCAGATAGCCTTCTCTGCAGTTTTCCAAGTTGCCACTGCTGCTGCTGTTTCTTCACCTGCAGTAGCACTTGACGAATTTCGAGTCTATTCTGACGATGCTAACAAGTACAAGATTTCTATCCCTCAAGATTGGCAAGTCGGAGTTGGGGAAACTGACGGAATCAAATCTATTACAGCATTTTACCCAGAGGCTTCTACTTCAAATGTCAGTGTGGCAATCACAGGAATTGGTCCTGATTTTACCAAATTGGAATCTTTTGGCAACGTTGATACTTTTGCAGAAAATCTGGTTAATGGATTGGATAGAAGTTGGCAGAGGCCTCCTGGAATTGCAGCAAAACTCATAGACTGTAAATCTAAAAATGGACTTTATTATGTTGAGTACACGCTCCAAAATCCTGGGGAAAGTCGCAGGCACATCTATTCTGCAACCGGGATGGCGCAAAATGGCTGGTATAACAGGCTTTATACAGTAACTGGACAGTTTGTGGAAGATGACTCTGATAAATTTGGATCCAAGATTCAAAAGGCTGTGCAATCGTTCAAATTAGGCTGA

Protein sequence

MMMAASGSTSTTSLLRQRTLSSSFPFSSRVRTSGRLSFITRKQPVIFCSLPKTQQTTATEHGVESSSTRRREAMLQIAFSAVFQVATAAAVSSPAVALDEFRVYSDDANKYKISIPQDWQVGVGETDGIKSITAFYPEASTSNVSVAITGIGPDFTKLESFGNVDTFAENLVNGLDRSWQRPPGIAAKLIDCKSKNGLYYVEYTLQNPGESRRHIYSATGMAQNGWYNRLYTVTGQFVEDDSDKFGSKIQKAVQSFKLG

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo25439	Spo25439	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo25439.1	Spo25439.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo25439.1.utr5p.1	Spo25439.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo25439.1.CDS.9	Spo25439.1.CDS.9	CDS
Spo25439.1.CDS.8	Spo25439.1.CDS.8	CDS
Spo25439.1.CDS.7	Spo25439.1.CDS.7	CDS
Spo25439.1.CDS.6	Spo25439.1.CDS.6	CDS
Spo25439.1.CDS.5	Spo25439.1.CDS.5	CDS
Spo25439.1.CDS.4	Spo25439.1.CDS.4	CDS
Spo25439.1.CDS.3	Spo25439.1.CDS.3	CDS
Spo25439.1.CDS.2	Spo25439.1.CDS.2	CDS
Spo25439.1.CDS.1	Spo25439.1.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo25439.1.utr3p.1	Spo25439.1.utr3p.1	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo25439.1.exon.9	Spo25439.1.exon.9	exon
Spo25439.1.exon.8	Spo25439.1.exon.8	exon
Spo25439.1.exon.7	Spo25439.1.exon.7	exon
Spo25439.1.exon.6	Spo25439.1.exon.6	exon
Spo25439.1.exon.5	Spo25439.1.exon.5	exon
Spo25439.1.exon.4	Spo25439.1.exon.4	exon
Spo25439.1.exon.3	Spo25439.1.exon.3	exon
Spo25439.1.exon.2	Spo25439.1.exon.2	exon
Spo25439.1.exon.1	Spo25439.1.exon.1	exon

Homology

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BLAST of Spo25439.1 vs. NCBI nr
Match: gi|902209259|gb|KNA16164.1| (hypothetical protein SOVF_091580 [Spinacia oleracea])

HSP 1 Score: 505.4 bits (1300), Expect = 6.000e-140
Identity = 259/259 (100.00%), Postives = 259/259 (100.00%), Query Frame = 1


		  
Query: 1   MMMAASGSTSTTSLLRQRTLSSSFPFSSRVRTSGRLSFITRKQPVIFCSLPKTQQTTATE 60
           MMMAASGSTSTTSLLRQRTLSSSFPFSSRVRTSGRLSFITRKQPVIFCSLPKTQQTTATE
Sbjct: 1   MMMAASGSTSTTSLLRQRTLSSSFPFSSRVRTSGRLSFITRKQPVIFCSLPKTQQTTATE 60

Query: 61  HGVESSSTRRREAMLQIAFSAVFQVATAAAVSSPAVALDEFRVYSDDANKYKISIPQDWQ 120
           HGVESSSTRRREAMLQIAFSAVFQVATAAAVSSPAVALDEFRVYSDDANKYKISIPQDWQ
Sbjct: 61  HGVESSSTRRREAMLQIAFSAVFQVATAAAVSSPAVALDEFRVYSDDANKYKISIPQDWQ 120

Query: 121 VGVGETDGIKSITAFYPEASTSNVSVAITGIGPDFTKLESFGNVDTFAENLVNGLDRSWQ 180
           VGVGETDGIKSITAFYPEASTSNVSVAITGIGPDFTKLESFGNVDTFAENLVNGLDRSWQ
Sbjct: 121 VGVGETDGIKSITAFYPEASTSNVSVAITGIGPDFTKLESFGNVDTFAENLVNGLDRSWQ 180

Query: 181 RPPGIAAKLIDCKSKNGLYYVEYTLQNPGESRRHIYSATGMAQNGWYNRLYTVTGQFVED 240
           RPPGIAAKLIDCKSKNGLYYVEYTLQNPGESRRHIYSATGMAQNGWYNRLYTVTGQFVED
Sbjct: 181 RPPGIAAKLIDCKSKNGLYYVEYTLQNPGESRRHIYSATGMAQNGWYNRLYTVTGQFVED 240

Query: 241 DSDKFGSKIQKAVQSFKLG 260
           DSDKFGSKIQKAVQSFKLG
Sbjct: 241 DSDKFGSKIQKAVQSFKLG 259

[Close]

BLAST of Spo25439.1 vs. NCBI nr
Match: gi|731314440|ref|XP_010686613.1| (PREDICTED: psbP domain-containing protein 3, chloroplastic isoform X2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 375.6 bits (963), Expect = 7.200e-101
Identity = 202/266 (75.94%), Postives = 221/266 (83.08%), Query Frame = 1


		  
Query: 1   MMMAASGSTSTT---SLLRQRTLSSSFPFSSRVRTSGRLSFITRKQPVIFCSLPKTQQTT 60
           MM AAS +T+ T   S L++ T SSSFPF SR      LSFITRKQPV+ C LP TQQ+ 
Sbjct: 1   MMTAASSATANTTAVSFLQRHTPSSSFPFISR-----SLSFITRKQPVVSCCLPTTQQSA 60

Query: 61  ATEHGVESSSTRRREAMLQIAFSAVFQVATAAAVSSPAVALD---EFRVYSDDANKYKIS 120
           A E+ V S+S+ RREAML IAFSA FQVA   AVSSPA+AL    EFRVYSDDANKYKIS
Sbjct: 61  AAEYEVVSTSSGRREAMLHIAFSAAFQVANVMAVSSPALALAVPAEFRVYSDDANKYKIS 120

Query: 121 IPQDWQVGVGETDGIKSITAFYPE-ASTSNVSVAITGIGPDFTKLESFGNVDTFAENLVN 180
           IPQDWQVG GETDGIKSITAFYPE ASTSNVSV ITGIGPDFTKLESFG VD FAE+LV 
Sbjct: 121 IPQDWQVGAGETDGIKSITAFYPEEASTSNVSVVITGIGPDFTKLESFGKVDAFAESLVT 180

Query: 181 GLDRSWQRPPGIAAKLIDCKSKNGLYYVEYTLQNPGESRRHIYSATGMAQNGWYNRLYTV 240
           GLDRSWQRPPG+AAKLID K+ NGLYY+EYTLQ PGESRRHIYSA GMA NGWYNRLYTV
Sbjct: 181 GLDRSWQRPPGVAAKLIDSKASNGLYYIEYTLQKPGESRRHIYSAIGMANNGWYNRLYTV 240

Query: 241 TGQFVEDDSDKFGSKIQKAVQSFKLG 260
           TGQFVED+S+KF S+IQKAV+SF+LG
Sbjct: 241 TGQFVEDESNKFESEIQKAVRSFRLG 261

[Close]

BLAST of Spo25439.1 vs. NCBI nr
Match: gi|731314438|ref|XP_010686605.1| (PREDICTED: psbP domain-containing protein 3, chloroplastic isoform X1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 375.2 bits (962), Expect = 9.400e-101
Identity = 202/267 (75.66%), Postives = 221/267 (82.77%), Query Frame = 1


		  
Query: 1   MMMAASGSTSTT---SLLRQRTLSSSFPFSSRVRTSGRLSFITRKQPVIFCSLPKTQQTT 60
           MM AAS +T+ T   S L++ T SSSFPF SR      LSFITRKQPV+ C LP TQQ+ 
Sbjct: 1   MMTAASSATANTTAVSFLQRHTPSSSFPFISR-----SLSFITRKQPVVSCCLPTTQQSA 60

Query: 61  ATEHGVESSSTRRREAMLQIAFSAVFQVATAAAVSSPAVALDE----FRVYSDDANKYKI 120
           A E+ V S+S+ RREAML IAFSA FQVA   AVSSPA+AL E    FRVYSDDANKYKI
Sbjct: 61  AAEYEVVSTSSGRREAMLHIAFSAAFQVANVMAVSSPALALAEVPAEFRVYSDDANKYKI 120

Query: 121 SIPQDWQVGVGETDGIKSITAFYPE-ASTSNVSVAITGIGPDFTKLESFGNVDTFAENLV 180
           SIPQDWQVG GETDGIKSITAFYPE ASTSNVSV ITGIGPDFTKLESFG VD FAE+LV
Sbjct: 121 SIPQDWQVGAGETDGIKSITAFYPEEASTSNVSVVITGIGPDFTKLESFGKVDAFAESLV 180

Query: 181 NGLDRSWQRPPGIAAKLIDCKSKNGLYYVEYTLQNPGESRRHIYSATGMAQNGWYNRLYT 240
            GLDRSWQRPPG+AAKLID K+ NGLYY+EYTLQ PGESRRHIYSA GMA NGWYNRLYT
Sbjct: 181 TGLDRSWQRPPGVAAKLIDSKASNGLYYIEYTLQKPGESRRHIYSAIGMANNGWYNRLYT 240

Query: 241 VTGQFVEDDSDKFGSKIQKAVQSFKLG 260
           VTGQFVED+S+KF S+IQKAV+SF+LG
Sbjct: 241 VTGQFVEDESNKFESEIQKAVRSFRLG 262

[Close]

BLAST of Spo25439.1 vs. NCBI nr
Match: gi|225457650|ref|XP_002273332.1| (PREDICTED: psbP domain-containing protein 3, chloroplastic [Vitis vinifera])

HSP 1 Score: 278.1 bits (710), Expect = 1.600e-71
Identity = 139/234 (59.40%), Postives = 171/234 (73.08%), Query Frame = 1


		  
Query: 26  FSSRVRTSGRLSFITRKQPVIFCSLPKTQQTTATEHGV-ESSSTRRREAMLQIAFSAVFQ 85
           +SS+     R     +KQ V+FC   + ++   T  G+ E     RRE +LQ+ FS +  
Sbjct: 19  YSSKKGYGSRTGKCGKKQRVVFCK-NENKEEEKTSFGIKEQHGGGRREVVLQMVFSTISL 78

Query: 86  VATAAAVSSPAVALDEFRVYSDDANKYKISIPQDWQVGVGETDGIKSITAFYPE-ASTSN 145
            A      +     ++F+VYSD+ NK+KI IPQDWQVG GE  G KS+TAFYPE AS SN
Sbjct: 79  QAIVPNALADTEVPEDFKVYSDEVNKFKIQIPQDWQVGSGEPSGFKSVTAFYPEEASGSN 138

Query: 146 VSVAITGIGPDFTKLESFGNVDTFAENLVNGLDRSWQRPPGIAAKLIDCKSKNGLYYVEY 205
           VSV ITG+G DFT+LESFG VD FAENLVNGLDRSWQRPPGIAAKLIDC++ NG YY+EY
Sbjct: 139 VSVVITGLGADFTRLESFGKVDAFAENLVNGLDRSWQRPPGIAAKLIDCRAANGFYYIEY 198

Query: 206 TLQNPGESRRHIYSATGMAQNGWYNRLYTVTGQFVEDDSDKFGSKIQKAVQSFK 258
            LQNPGESRRH++SA GMA NGWYNRLYTVTGQ++E++S+KF SKI+K V SF+
Sbjct: 199 WLQNPGESRRHLFSAVGMANNGWYNRLYTVTGQYLEEESEKFSSKIEKVVASFR 251

[Close]

BLAST of Spo25439.1 vs. NCBI nr
Match: gi|568839775|ref|XP_006473854.1| (PREDICTED: psbP domain-containing protein 3, chloroplastic isoform X2 [Citrus sinensis])

HSP 1 Score: 275.8 bits (704), Expect = 7.800e-71
Identity = 134/224 (59.82%), Postives = 174/224 (77.68%), Query Frame = 1


		  
Query: 42  KQPVIFCSLPKTQQTTAT-------EHGVESSSTRRREAMLQIAFSAVFQVATAAAVSSP 101
           K+  +FC   + Q+  A        E   + S T+RRE M Q+AF+A     +  A+ S 
Sbjct: 42  KKQFVFCCKKQEQEDDARTLNRFRIEEQDDDSRTKRREVMFQLAFTA----CSFPAIVSY 101

Query: 102 AVALDEFRVYSDDANKYKISIPQDWQVGVGETDGIKSITAFYP-EASTSNVSVAITGIGP 161
           A+A ++ RVY+D+ NK++ISIPQDWQ+G GE +G KSITAFYP EAS+S+VSV ITG+GP
Sbjct: 102 ALAANDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGP 161

Query: 162 DFTKLESFGNVDTFAENLVNGLDRSWQRPPGIAAKLIDCKSKNGLYYVEYTLQNPGESRR 221
           DFT++ESFG V+ FA+ LV+GLDRSW+RPPG+AAKLIDCK+  G YY+EYTLQNPGESR+
Sbjct: 162 DFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKASKGFYYIEYTLQNPGESRK 221

Query: 222 HIYSATGMAQNGWYNRLYTVTGQFVEDDSDKFGSKIQKAVQSFK 258
           H++SA GMA NGWYNRLYTVTGQFVE++S+K+GS I+KAV SF+
Sbjct: 222 HLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFR 261

[Close]

BLAST of Spo25439.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RAY3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_091580 PE=4 SV=1)

HSP 1 Score: 505.4 bits (1300), Expect = 4.200e-140
Identity = 259/259 (100.00%), Postives = 259/259 (100.00%), Query Frame = 1


		  
Query: 1   MMMAASGSTSTTSLLRQRTLSSSFPFSSRVRTSGRLSFITRKQPVIFCSLPKTQQTTATE 60
           MMMAASGSTSTTSLLRQRTLSSSFPFSSRVRTSGRLSFITRKQPVIFCSLPKTQQTTATE
Sbjct: 1   MMMAASGSTSTTSLLRQRTLSSSFPFSSRVRTSGRLSFITRKQPVIFCSLPKTQQTTATE 60

Query: 61  HGVESSSTRRREAMLQIAFSAVFQVATAAAVSSPAVALDEFRVYSDDANKYKISIPQDWQ 120
           HGVESSSTRRREAMLQIAFSAVFQVATAAAVSSPAVALDEFRVYSDDANKYKISIPQDWQ
Sbjct: 61  HGVESSSTRRREAMLQIAFSAVFQVATAAAVSSPAVALDEFRVYSDDANKYKISIPQDWQ 120

Query: 121 VGVGETDGIKSITAFYPEASTSNVSVAITGIGPDFTKLESFGNVDTFAENLVNGLDRSWQ 180
           VGVGETDGIKSITAFYPEASTSNVSVAITGIGPDFTKLESFGNVDTFAENLVNGLDRSWQ
Sbjct: 121 VGVGETDGIKSITAFYPEASTSNVSVAITGIGPDFTKLESFGNVDTFAENLVNGLDRSWQ 180

Query: 181 RPPGIAAKLIDCKSKNGLYYVEYTLQNPGESRRHIYSATGMAQNGWYNRLYTVTGQFVED 240
           RPPGIAAKLIDCKSKNGLYYVEYTLQNPGESRRHIYSATGMAQNGWYNRLYTVTGQFVED
Sbjct: 181 RPPGIAAKLIDCKSKNGLYYVEYTLQNPGESRRHIYSATGMAQNGWYNRLYTVTGQFVED 240

Query: 241 DSDKFGSKIQKAVQSFKLG 260
           DSDKFGSKIQKAVQSFKLG
Sbjct: 241 DSDKFGSKIQKAVQSFKLG 259

[Close]

BLAST of Spo25439.1 vs. UniProtKB/TrEMBL
Match: A0A0J8D059_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g013940 PE=4 SV=1)

HSP 1 Score: 375.2 bits (962), Expect = 6.600e-101
Identity = 202/267 (75.66%), Postives = 221/267 (82.77%), Query Frame = 1


		  
Query: 1   MMMAASGSTSTT---SLLRQRTLSSSFPFSSRVRTSGRLSFITRKQPVIFCSLPKTQQTT 60
           MM AAS +T+ T   S L++ T SSSFPF SR      LSFITRKQPV+ C LP TQQ+ 
Sbjct: 1   MMTAASSATANTTAVSFLQRHTPSSSFPFISR-----SLSFITRKQPVVSCCLPTTQQSA 60

Query: 61  ATEHGVESSSTRRREAMLQIAFSAVFQVATAAAVSSPAVALDE----FRVYSDDANKYKI 120
           A E+ V S+S+ RREAML IAFSA FQVA   AVSSPA+AL E    FRVYSDDANKYKI
Sbjct: 61  AAEYEVVSTSSGRREAMLHIAFSAAFQVANVMAVSSPALALAEVPAEFRVYSDDANKYKI 120

Query: 121 SIPQDWQVGVGETDGIKSITAFYPE-ASTSNVSVAITGIGPDFTKLESFGNVDTFAENLV 180
           SIPQDWQVG GETDGIKSITAFYPE ASTSNVSV ITGIGPDFTKLESFG VD FAE+LV
Sbjct: 121 SIPQDWQVGAGETDGIKSITAFYPEEASTSNVSVVITGIGPDFTKLESFGKVDAFAESLV 180

Query: 181 NGLDRSWQRPPGIAAKLIDCKSKNGLYYVEYTLQNPGESRRHIYSATGMAQNGWYNRLYT 240
            GLDRSWQRPPG+AAKLID K+ NGLYY+EYTLQ PGESRRHIYSA GMA NGWYNRLYT
Sbjct: 181 TGLDRSWQRPPGVAAKLIDSKASNGLYYIEYTLQKPGESRRHIYSAIGMANNGWYNRLYT 240

Query: 241 VTGQFVEDDSDKFGSKIQKAVQSFKLG 260
           VTGQFVED+S+KF S+IQKAV+SF+LG
Sbjct: 241 VTGQFVEDESNKFESEIQKAVRSFRLG 262

[Close]

BLAST of Spo25439.1 vs. UniProtKB/TrEMBL
Match: D7UDF1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0122g00680 PE=4 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 1.100e-71
Identity = 139/234 (59.40%), Postives = 171/234 (73.08%), Query Frame = 1


		  
Query: 26  FSSRVRTSGRLSFITRKQPVIFCSLPKTQQTTATEHGV-ESSSTRRREAMLQIAFSAVFQ 85
           +SS+     R     +KQ V+FC   + ++   T  G+ E     RRE +LQ+ FS +  
Sbjct: 19  YSSKKGYGSRTGKCGKKQRVVFCK-NENKEEEKTSFGIKEQHGGGRREVVLQMVFSTISL 78

Query: 86  VATAAAVSSPAVALDEFRVYSDDANKYKISIPQDWQVGVGETDGIKSITAFYPE-ASTSN 145
            A      +     ++F+VYSD+ NK+KI IPQDWQVG GE  G KS+TAFYPE AS SN
Sbjct: 79  QAIVPNALADTEVPEDFKVYSDEVNKFKIQIPQDWQVGSGEPSGFKSVTAFYPEEASGSN 138

Query: 146 VSVAITGIGPDFTKLESFGNVDTFAENLVNGLDRSWQRPPGIAAKLIDCKSKNGLYYVEY 205
           VSV ITG+G DFT+LESFG VD FAENLVNGLDRSWQRPPGIAAKLIDC++ NG YY+EY
Sbjct: 139 VSVVITGLGADFTRLESFGKVDAFAENLVNGLDRSWQRPPGIAAKLIDCRAANGFYYIEY 198

Query: 206 TLQNPGESRRHIYSATGMAQNGWYNRLYTVTGQFVEDDSDKFGSKIQKAVQSFK 258
            LQNPGESRRH++SA GMA NGWYNRLYTVTGQ++E++S+KF SKI+K V SF+
Sbjct: 199 WLQNPGESRRHLFSAVGMANNGWYNRLYTVTGQYLEEESEKFSSKIEKVVASFR 251

[Close]

BLAST of Spo25439.1 vs. UniProtKB/TrEMBL
Match: A0A061FGP5_THECC (Photosystem II reaction center PsbP family protein isoform 1 OS=Theobroma cacao GN=TCM_034821 PE=4 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 5.400e-71
Identity = 140/222 (63.06%), Postives = 172/222 (77.48%), Query Frame = 1


		  
Query: 41  RKQPVIFCSLPKTQQTTATEHGVESSSTRRREAMLQ---IAFSAVFQVATAAAVSSPAVA 100
           +K+P I     + Q+     HG E + TRRR+ MLQ   IAFS    V+ A A   P V 
Sbjct: 55  KKKPFI-----RVQEVKEDGHGHEHA-TRRRQIMLQGPLIAFSFPQFVSAALAGKEPDVP 114

Query: 101 LDEFRVYSDDANKYKISIPQDWQVGVGETDGIKSITAFYPE--ASTSNVSVAITGIGPDF 160
            D FR Y+DD NK+KI IPQDWQVG GE +G KSITAF+PE  A+ SNVSV ITG+GPDF
Sbjct: 115 QD-FRAYTDDVNKFKIFIPQDWQVGAGEPNGFKSITAFFPEEEAANSNVSVVITGLGPDF 174

Query: 161 TKLESFGNVDTFAENLVNGLDRSWQRPPGIAAKLIDCKSKNGLYYVEYTLQNPGESRRHI 220
           T++ESFG V+ FA+ LV+GLDRSWQRPPG+AAKLIDCK+ NG YY+EYTLQNPGESR+H+
Sbjct: 175 TRMESFGKVEAFADTLVSGLDRSWQRPPGVAAKLIDCKAANGFYYIEYTLQNPGESRKHL 234

Query: 221 YSATGMAQNGWYNRLYTVTGQFVEDDSDKFGSKIQKAVQSFK 258
           +SA GMA NGWYNRLYTVTGQFV+D+++K+GS+I+KAV SF+
Sbjct: 235 FSAIGMASNGWYNRLYTVTGQFVDDEAEKYGSRIEKAVSSFR 269

[Close]

BLAST of Spo25439.1 vs. UniProtKB/TrEMBL
Match: A0A067H085_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g024710mg PE=4 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 2.100e-70
Identity = 134/224 (59.82%), Postives = 172/224 (76.79%), Query Frame = 1


		  
Query: 42  KQPVIFCSLPKTQQTTAT-------EHGVESSSTRRREAMLQIAFSAVFQVATAAAVSSP 101
           K+  +FC   + Q+  A        E   + S T+RRE M Q+AF+A    +  A VS  
Sbjct: 42  KKQFVFCCKKQEQEDDARTLNRFRIEEQDDDSRTKRREVMFQLAFTAC---SFPAIVSYA 101

Query: 102 AVALDEFRVYSDDANKYKISIPQDWQVGVGETDGIKSITAFYP-EASTSNVSVAITGIGP 161
             A ++ RVY+D+ NK++ISIPQDWQ+G GE +G KSITAFYP EAS+S+VSV ITG+GP
Sbjct: 102 LAANEDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGP 161

Query: 162 DFTKLESFGNVDTFAENLVNGLDRSWQRPPGIAAKLIDCKSKNGLYYVEYTLQNPGESRR 221
           DFT++ESFG V+ FA+ LV+GLDRSW+RPPG+AAKLIDCK+  G YY+EYTLQNPGESR+
Sbjct: 162 DFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKASKGFYYIEYTLQNPGESRK 221

Query: 222 HIYSATGMAQNGWYNRLYTVTGQFVEDDSDKFGSKIQKAVQSFK 258
           H++SA GMA NGWYNRLYTVTGQFVE++S+K+GS I+KAV SF+
Sbjct: 222 HLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFR 262

[Close]

BLAST of Spo25439.1 vs. ExPASy Swiss-Prot
Match: PPD3_ARATH (PsbP domain-containing protein 3, chloroplastic OS=Arabidopsis thaliana GN=PPD3 PE=1 SV=2)

HSP 1 Score: 253.1 bits (645), Expect = 3.400e-66
Identity = 132/242 (54.55%), Postives = 171/242 (70.66%), Query Frame = 1


		  
Query: 20  LSSSFPFSS---RVRTSGRLSFITRKQPVIFCSLPKTQQTTATEHGVESSSTRRREAMLQ 79
           LSS   FS+    +  S R S I+    V+  S  +  + ++ +H       +RR+ MLQ
Sbjct: 8   LSSPQSFSNPRVTITDSRRCSSISAAISVLDSSNEEQHRISSRDH----VGMKRRDVMLQ 67

Query: 80  IAFSAVFQVATAAAVSSPAVALDEFRVYSDDANKYKISIPQDWQVGVGETDGIKSITAFY 139
           IA S  F     +   +   A + FRVY+D+ NK++ISIPQDWQVG  E +G KSITAFY
Sbjct: 68  IASSVFFLPLAISPAFAETNASEAFRVYTDETNKFEISIPQDWQVGQAEPNGFKSITAFY 127

Query: 140 P-EASTSNVSVAITGIGPDFTKLESFGNVDTFAENLVNGLDRSWQRPPGIAAKLIDCKSK 199
           P E STSNVS+AITG+GPDFT++ESFG V+ FAE LV+GLDRSWQ+P G+ AKLID ++ 
Sbjct: 128 PQETSTSNVSIAITGLGPDFTRMESFGKVEAFAETLVSGLDRSWQKPVGVTAKLIDSRAS 187

Query: 200 NGLYYVEYTLQNPGESRRHIYSATGMAQNGWYNRLYTVTGQFVEDDSDKFGSKIQKAVQS 258
            G YY+EYTLQNPGE+R+H+YSA GMA NGWYNRLYTVTGQF +++S +  SKIQK V+S
Sbjct: 188 KGFYYIEYTLQNPGEARKHLYSAIGMATNGWYNRLYTVTGQFTDEESAEQSSKIQKTVKS 245

[Close]

BLAST of Spo25439.1 vs. TAIR (Arabidopsis)
Match: AT1G76450.1 (Photosystem II reaction center PsbP family protein)

HSP 1 Score: 253.1 bits (645), Expect = 1.900e-67
Identity = 132/242 (54.55%), Postives = 171/242 (70.66%), Query Frame = 1


		  
Query: 20  LSSSFPFSS---RVRTSGRLSFITRKQPVIFCSLPKTQQTTATEHGVESSSTRRREAMLQ 79
           LSS   FS+    +  S R S I+    V+  S  +  + ++ +H       +RR+ MLQ
Sbjct: 8   LSSPQSFSNPRVTITDSRRCSSISAAISVLDSSNEEQHRISSRDH----VGMKRRDVMLQ 67

Query: 80  IAFSAVFQVATAAAVSSPAVALDEFRVYSDDANKYKISIPQDWQVGVGETDGIKSITAFY 139
           IA S  F     +   +   A + FRVY+D+ NK++ISIPQDWQVG  E +G KSITAFY
Sbjct: 68  IASSVFFLPLAISPAFAETNASEAFRVYTDETNKFEISIPQDWQVGQAEPNGFKSITAFY 127

Query: 140 P-EASTSNVSVAITGIGPDFTKLESFGNVDTFAENLVNGLDRSWQRPPGIAAKLIDCKSK 199
           P E STSNVS+AITG+GPDFT++ESFG V+ FAE LV+GLDRSWQ+P G+ AKLID ++ 
Sbjct: 128 PQETSTSNVSIAITGLGPDFTRMESFGKVEAFAETLVSGLDRSWQKPVGVTAKLIDSRAS 187

Query: 200 NGLYYVEYTLQNPGESRRHIYSATGMAQNGWYNRLYTVTGQFVEDDSDKFGSKIQKAVQS 258
            G YY+EYTLQNPGE+R+H+YSA GMA NGWYNRLYTVTGQF +++S +  SKIQK V+S
Sbjct: 188 KGFYYIEYTLQNPGEARKHLYSAIGMATNGWYNRLYTVTGQFTDEESAEQSSKIQKTVKS 245

The following BLAST results are available for this feature:

BLAST of Spo25439.1 vs. NCBI nr
BLAST of Spo25439.1 vs. UniProtKB/TrEMBL
BLAST of Spo25439.1 vs. ExPASy Swiss-Prot
BLAST of Spo25439.1 vs. TAIR (Arabidopsis)

BLAST of Spo25439.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902209259\|gb\|KNA16164.1\|	6.0e-140	100.	hypothetical protein SOVF_0915...	[more]
gi\|731314440\|ref\|XP_010686613.1\|	7.2e-101	75.9	PREDICTED: psbP domain-contain...	[more]
gi\|731314438\|ref\|XP_010686605.1\|	9.4e-101	75.6	PREDICTED: psbP domain-contain...	[more]
gi\|225457650\|ref\|XP_002273332.1\|	1.6e-71	59.4	PREDICTED: psbP domain-contain...	[more]
gi\|568839775\|ref\|XP_006473854.1\|	7.8e-71	59.8	PREDICTED: psbP domain-contain...	[more]

BLAST of Spo25439.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9RAY3_SPIOL	4.2e-140	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8D059_BETVU	6.6e-101	75.6	Uncharacterized protein OS=Bet...	[more]
D7UDF1_VITVI	1.1e-71	59.4	Putative uncharacterized prote...	[more]
A0A061FGP5_THECC	5.4e-71	63.0	Photosystem II reaction center...	[more]
A0A067H085_CITSI	2.1e-70	59.8	Uncharacterized protein OS=Cit...	[more]

BLAST of Spo25439.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 1


Match Name	E-value	Identity	Description
PPD3_ARATH	3.4e-66	54.5	PsbP domain-containing protein...	[more]

BLAST of Spo25439.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1


Match Name	E-value	Identity	Description
AT1G76450.1	1.9e-67	54.5	Photosystem II reaction center...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002683	PsbP family	PFAM	PF01789	PsbP	coord: 86..257 score: 1.9
IPR016123	Mog1/PsbP, alpha/beta/alpha sandwich	GENE3D	3.40.1000.10		coord: 99..258 score: 8.6
IPR016123	Mog1/PsbP, alpha/beta/alpha sandwich	unknown	SSF55724	Mog1p/PsbP-like	coord: 101..258 score: 8.89
None	No IPR available	PANTHER	PTHR31407	FAMILY NOT NAMED	coord: 5..258 score: 1.3
None	No IPR available	PANTHER	PTHR31407:SF17	PSBP DOMAIN-CONTAINING PROTEIN 3, CHLOROPLASTIC	coord: 5..258 score: 1.3

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
biological_process	GO:0009637	response to blue light
biological_process	GO:0010027	thylakoid membrane organization
biological_process	GO:0019252	starch biosynthetic process
biological_process	GO:0006364	rRNA processing
biological_process	GO:0010114	response to red light
biological_process	GO:0010218	response to far red light
biological_process	GO:0042793	plastid transcription
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0000023	maltose metabolic process
biological_process	GO:0009902	chloroplast relocation
biological_process	GO:0015995	chlorophyll biosynthetic process
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0009543	chloroplast thylakoid lumen
cellular_component	GO:0009535	chloroplast thylakoid membrane
molecular_function	GO:0005509	calcium ion binding