Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGATGCTTTTCCCTATTTTGATTCTCGTATTGGGAATTACAATAGGTGTACTAGTAATTGTATGGTTAGAAAGAGAAATATCCGCAAGTATACAACAACGTATTGGACCTGAATATGCTGGTCCTTTGGGGATTCTTCAAGCTTTAGCGGACGGAACAAAACTGCTTTTTNGAGAAATATCCGCAAGTATACAACAACGTATTGGACCTGAATATGCTGGTCCTTTGGGGATTCTTCAAGCTTTAGCGGACGGAACAAAACTGCTTTTTAAAGAAAACCTTCTTCCATCTAGGGGGGATACATATTTATTTAGTATTGGACCTTCTATAGCAGTCATATCGATTCTACTAGGTTACTTAATAATTCCTTTTGGGTCTCGCCTTGTTCTAGCCGATCTCAGTATTGGTGTTTTTTTATGGATCGCTGTTTCAAGCATTGCTCCGATTGGACTTCTTATGTCAGGATATGGATCANNNNNNNNNNACCCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTTTGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCTTTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCTGAAGATCCTGAATTTGAAACTTTTTACACCAAAAATATTCTCTTAAACGAGGGTATCCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCTTTAA ATGGATGCTTTTCCCTATTTTGATTCTCGTATTGGGAATTACAATAGGTGTACTATAACCGGTTTTTGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCTTTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCTGAAGATCCTGAATTTGAAACTTTTTACACCAAAAATATTCTCTTAAACGAGGGTATCCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCTTTAA ATGGATGCTTTTCCCTATTTTGATTCTCGTATTGGGAATTACAATAGGTGTACTATAACCGGTTTTTGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCTTTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCTGAAGATCCTGAATTTGAAACTTTTTACACCAAAAATATTCTCTTAAACGAGGGTATCCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCTTTAA MDAFPYFDSRIGNYNRCTITGFWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVLPRGNAL Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of Spo22445.1 vs. NCBI nr
Match: gi|985430945|ref|XP_015387348.1| (PREDICTED: uncharacterized protein LOC107177670 [Citrus sinensis]) HSP 1 Score: 162.2 bits (409), Expect = 4.600e-37 Identity = 77/78 (98.72%), Postives = 77/78 (98.72%), Query Frame = 1
BLAST of Spo22445.1 vs. NCBI nr
Match: gi|816377432|gb|AKF00091.1| (photosystem II protein D2 (chloroplast) [Orania palindan]) HSP 1 Score: 160.2 bits (404), Expect = 1.700e-36 Identity = 76/77 (98.70%), Postives = 76/77 (98.70%), Query Frame = 1
BLAST of Spo22445.1 vs. NCBI nr
Match: gi|511265852|gb|AGN71959.1| (photosystem II protein D2 [Dasiphora fruticosa subsp. floribunda]) HSP 1 Score: 159.8 bits (403), Expect = 2.300e-36 Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 1
BLAST of Spo22445.1 vs. NCBI nr
Match: gi|11497520|ref|NP_054928.1| (photosystem II protein D2 [Spinacia oleracea]) HSP 1 Score: 159.8 bits (403), Expect = 2.300e-36 Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 1
BLAST of Spo22445.1 vs. NCBI nr
Match: gi|628819103|gb|AHY80536.1| (photosystem II protein D2 (plastid) [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 159.8 bits (403), Expect = 2.300e-36 Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 1
BLAST of Spo22445.1 vs. UniProtKB/TrEMBL
Match: A0A0H3VQ29_9LILI (Photosystem II D2 protein OS=Orania palindan GN=psbD PE=3 SV=1) HSP 1 Score: 160.2 bits (404), Expect = 1.200e-36 Identity = 76/77 (98.70%), Postives = 76/77 (98.70%), Query Frame = 1
BLAST of Spo22445.1 vs. UniProtKB/TrEMBL
Match: S4T0Y5_MEDTR (Photosystem II D2 protein OS=Medicago truncatula GN=psbD PE=3 SV=1) HSP 1 Score: 159.8 bits (403), Expect = 1.600e-36 Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 1
BLAST of Spo22445.1 vs. UniProtKB/TrEMBL
Match: A0A0K1ZA94_MONFI (Photosystem II D2 protein OS=Monarda fistulosa var. mollis GN=psbD PE=3 SV=1) HSP 1 Score: 159.8 bits (403), Expect = 1.600e-36 Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 1
BLAST of Spo22445.1 vs. UniProtKB/TrEMBL
Match: A0A0G2YEU1_9ROSI (Photosystem II D2 protein OS=Geranium incanum GN=psbD PE=3 SV=1) HSP 1 Score: 159.8 bits (403), Expect = 1.600e-36 Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 1
BLAST of Spo22445.1 vs. UniProtKB/TrEMBL
Match: F6I8M7_OLEEU (Photosystem II D2 protein OS=Olea europaea subsp. cuspidata GN=psbD PE=3 SV=1) HSP 1 Score: 159.8 bits (403), Expect = 1.600e-36 Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 1
BLAST of Spo22445.1 vs. ExPASy Swiss-Prot
Match: PSBD_AETGR (Photosystem II D2 protein OS=Aethionema grandiflorum GN=psbD PE=3 SV=1) HSP 1 Score: 159.8 bits (403), Expect = 1.400e-38 Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 1
BLAST of Spo22445.1 vs. ExPASy Swiss-Prot
Match: PSBD_NUPAD (Photosystem II D2 protein OS=Nuphar advena GN=psbD PE=3 SV=1) HSP 1 Score: 159.8 bits (403), Expect = 1.400e-38 Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 1
BLAST of Spo22445.1 vs. ExPASy Swiss-Prot
Match: PSBD_NYMAL (Photosystem II D2 protein OS=Nymphaea alba GN=psbD PE=3 SV=1) HSP 1 Score: 159.8 bits (403), Expect = 1.400e-38 Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 1
BLAST of Spo22445.1 vs. ExPASy Swiss-Prot
Match: PSBD_VITVI (Photosystem II D2 protein OS=Vitis vinifera GN=psbD PE=3 SV=1) HSP 1 Score: 159.8 bits (403), Expect = 1.400e-38 Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 1
BLAST of Spo22445.1 vs. ExPASy Swiss-Prot
Match: PSBD_ACOAM (Photosystem II D2 protein OS=Acorus americanus GN=psbD PE=3 SV=1) HSP 1 Score: 159.8 bits (403), Expect = 1.400e-38 Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 1
BLAST of Spo22445.1 vs. TAIR (Arabidopsis)
Match: ATCG00270.1 (photosystem II reaction center protein D) HSP 1 Score: 159.8 bits (403), Expect = 8.000e-40 Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo22445.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo22445.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo22445.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo22445.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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