Spo14866.1 (mRNA) | SpinachBase

Overview


Name	Spo14866.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	50S ribosomal protein L28
Location	Super_scaffold_65 : 1528514 .. 1531246 (+)
Sequence length	970

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCATATTATCATCCACCTATTTCAATCTTCAAAAAAGCAGATAACAAGACACAAGGAGAAGAGGAGAGAGAAAAACAGCAATGGCAGCTTCAGGAATGTTGATAAGCAACCCAAGCAATGTGTGCTTCCGCAAACCCCAATTCTCATGCTCATTGAAACCCAAAGCAACAGTTTCAGAGCTAGGGTTTCTCACTTCCCAACTCAGTGGCATTCAAATTTCGCCTTCTCCACTCTTCCCCATCATTAGCAAACCCATTTCCGCGCCTCTCAAACCTTCGCTTCAGCCTGTTGCTCGTAAGTACCCTTTTCTCAATTTTGTATTCAATCCTCTGTTTGTTGGAATTGCTGTGGTTTAACTTTTGTAGGTTTGCAATTTTTCTGAGTTTTGTTGCTCGCCCCCCAATTTTTTCATTAGTTCTCTGGTTAATACAGTATTGTGTTCAAATTGTTTGCATCTTTTGTGATTTTTCGGTCTGTGATTAAATTTTGCAATTGGCTTAATTGCTAATATTCGAGCTGAGAATTTGAGCTAAAATTAAGGGCATTATCTGAATTATTATTGGGGTAGAATTGGAGAGCATAATTCTTGTATGTTGAGGAACTTTATGAGCGGTGAATTAACTAGGGATGCTCTTGATTTTCGCCAAATGCTGTTTGGTTGAACATGTTTTTGATCATGGATTCATGCTATACCCTTACTTTAGCTTCACCACCAGGTTGTGTTTTCTGGTAAACCTTTAATACACAAAGTATGTGTAGGTAACACACTACAAGATAATCACTTTATAGAGATGAGGGATTCTTCTCTAATTACGACCTCCCTGTAGAGGTGGTCTCAACATTTTTTAGGACGGATTTTTGGCAAATCTATTACAAATTTGACACGGAATTTTGGAACTCCATATACAATTCCATCTCAGTTATTATTTAGAGACAAAATGTTAGTAACCATCTCAAGTTTGAGATGTTTATAGTATCCGTCTCTAATAATGCATAGTTTTGTAGTGACACCGTTTCTCCATGTCGGTGTTATTTGTTTGAGGTGAGGGTTGGGGTTAGCAAAGGAAAAAGTTTAGTTATCTTGCAAATTTGGGCCATGTTGTTGGATGAACCTGTCACATGTTGCTATGAGATTTTTGTTATGATGGATGATGTTAATTGGGTTTGAGTTGCTCTAGGAGCCTTGAGAAGATTGAGTAGCTGTTAATTTAGGTTCTAGTGGATTTGCCCCCATAAAGACCTGAGAGAAATGAAAATTCTATTCCCATGTCCCCTTCTGTTGCTCGAGATGTTACATGTTAATTGTTATTGTCATCTTTGCTGATGGCATTTCAGGTTGCAGAATTTTGATATTGGGGACTAGTTTTAAATTTCTATTGGAACTTTTTCTTTTAGAATTTGATTTGTGTAGCCTTTGAAACTAAGGTTTTCAAGTTCAATTTTCGTTTTATACTTGTATGATAAAAAGCTTGTTTGAAGTAGAAAAGGATGTTTTGAAATGTATGAAATCTGTTTGCATAGGGCACATTTGGTATGTGGGAATAAATGAAGGTGATGGTAATGAATTAGATGTTAATTTGGAAGGAAAGTCATATGCCAAAGTCCATGATAATACTTGTCCTTCTTCAAATATCTTTTTTTCTTCATAAATTTTCATTACGGAGTACTACTTTTATGATATGGAGTGGTAATACTGGTAAAGGAAATTTATGAAAAATAACACATGGTTGGACTTTGGAGATGAAATTGTATTACTACGTACTATGTAATATGTATACATACTATCGAGAATTAAGATGGAGTTAATCTTAAAGAATTACAGAGTACATGTTTGTTTTTATTAGCATGATTCATCATCCCTATCAAAAGGAGCCGTAAGCAGATCTGGCAGAAGTAGTGATATTATGCCACTGTGTATGAATCTGAATAATTGTTGATTGTCTTCTAATTCCCTGGCAACGATTTCAATTTGATCTGATATTGGTGTCTAACCCACTACTGTCTGTGATACTTATTGTGATTGAGGTTATTAATTTAACGAGTTGAGTAATTATCAGGCAGAATATGTCCGTTCACTGGGAAGAAGTCGAACAAGGCTAACAGGGTTTCCCACTCAAACCACAAAACAAAAAGATTGCAGTTTGTGAACCTGCAATACAAGAGAGTGTGGTGGGAAGCTGGTAAAAGGTTTGTGAAACTCAGGTTATCAACCAAGGCTTTGAAGACCATAGAGAAGAACGGGTTGGATGCTGTTGCGAAGAAGGCAGGGATAGACCTTAGAAAGGAATAATAGGATGGACGTGTTTGTAAAGCACGAACAAGGCCGAATTTTCTTGTTTTGTTATCCTACCTTGTTAGTGATTGTCTTATATTGTAATCAACATTTTCCCTAAGCTAGGTTTTTTTTATAATCTGTAGCATGTTGAGCAAATTAATGAAAAAGAAAATTCAGGAGGTCAGTGTTGCAATATTTGGTTAATTGTTTTGTAAAGCAGGCATTACTGATCAGTAAATTTGGTTCTGCATAACAATTTTGCATTTCACTTGATGGTGTTTGTATTGTACTATTGTATTGATGTAAAGCTTTAGACAGTGAATTGCATATGGTAGAGAGCGAACAACTCGATATACTCTCAGTTAAAGAAAGTCCTGTAACGGAGTCTCTTCTCCATCGGAACTGGTTTTGCAGCTGTAATTGAAGTTGTTTGACTAAAATGCGATTTATGTACCCG

mRNA sequence

ATCATATTATCATCCACCTATTTCAATCTTCAAAAAAGCAGATAACAAGACACAAGGAGAAGAGGAGAGAGAAAAACAGCAATGGCAGCTTCAGGAATGTTGATAAGCAACCCAAGCAATGTGTGCTTCCGCAAACCCCAATTCTCATGCTCATTGAAACCCAAAGCAACAGTTTCAGAGCTAGGGTTTCTCACTTCCCAACTCAGTGGCATTCAAATTTCGCCTTCTCCACTCTTCCCCATCATTAGCAAACCCATTTCCGCGCCTCTCAAACCTTCGCTTCAGCCTGTTGCTCGCAGAATATGTCCGTTCACTGGGAAGAAGTCGAACAAGGCTAACAGGGTTTCCCACTCAAACCACAAAACAAAAAGATTGCAGTTTGTGAACCTGCAATACAAGAGAGTGTGGTGGGAAGCTGGTAAAAGGTTTGTGAAACTCAGGTTATCAACCAAGGCTTTGAAGACCATAGAGAAGAACGGGTTGGATGCTGTTGCGAAGAAGGCAGGGATAGACCTTAGAAAGGAATAATAGGATGGACGTGTTTGTAAAGCACGAACAAGGCCGAATTTTCTTGTTTTGTTATCCTACCTTGTTAGTGATTGTCTTATATTGTAATCAACATTTTCCCTAAGCTAGGTTTTTTTTATAATCTGTAGCATGTTGAGCAAATTAATGAAAAAGAAAATTCAGGAGGTCAGTGTTGCAATATTTGGTTAATTGTTTTGTAAAGCAGGCATTACTGATCAGTAAATTTGGTTCTGCATAACAATTTTGCATTTCACTTGATGGTGTTTGTATTGTACTATTGTATTGATGTAAAGCTTTAGACAGTGAATTGCATATGGTAGAGAGCGAACAACTCGATATACTCTCAGTTAAAGAAAGTCCTGTAACGGAGTCTCTTCTCCATCGGAACTGGTTTTGCAGCTGTAATTGAAGTTGTTTGACTAAAATGCGATTTATGTACCCG

Coding sequence (CDS)

ATGGCAGCTTCAGGAATGTTGATAAGCAACCCAAGCAATGTGTGCTTCCGCAAACCCCAATTCTCATGCTCATTGAAACCCAAAGCAACAGTTTCAGAGCTAGGGTTTCTCACTTCCCAACTCAGTGGCATTCAAATTTCGCCTTCTCCACTCTTCCCCATCATTAGCAAACCCATTTCCGCGCCTCTCAAACCTTCGCTTCAGCCTGTTGCTCGCAGAATATGTCCGTTCACTGGGAAGAAGTCGAACAAGGCTAACAGGGTTTCCCACTCAAACCACAAAACAAAAAGATTGCAGTTTGTGAACCTGCAATACAAGAGAGTGTGGTGGGAAGCTGGTAAAAGGTTTGTGAAACTCAGGTTATCAACCAAGGCTTTGAAGACCATAGAGAAGAACGGGTTGGATGCTGTTGCGAAGAAGGCAGGGATAGACCTTAGAAAGGAATAA

Protein sequence

MAASGMLISNPSNVCFRKPQFSCSLKPKATVSELGFLTSQLSGIQISPSPLFPIISKPISAPLKPSLQPVARRICPFTGKKSNKANRVSHSNHKTKRLQFVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo14866	Spo14866	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo14866.1	Spo14866.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo14866.1.exon.1	Spo14866.1.exon.1	exon
Spo14866.1.exon.2	Spo14866.1.exon.2	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo14866.1.utr5p.1	Spo14866.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo14866.1.CDS.1	Spo14866.1.CDS.1	CDS
Spo14866.1.CDS.2	Spo14866.1.CDS.2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo14866.1.utr3p.1	Spo14866.1.utr3p.1	three_prime_UTR

Homology

[Close]

BLAST of Spo14866.1 vs. NCBI nr
Match: gi|902212074|gb|KNA16864.1| (hypothetical protein SOVF_085320 [Spinacia oleracea])

HSP 1 Score: 290.0 bits (741), Expect = 2.300e-75
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 1


		  
Query: 1   MAASGMLISNPSNVCFRKPQFSCSLKPKATVSELGFLTSQLSGIQISPSPLFPIISKPIS 60
           MAASGMLISNPSNVCFRKPQFSCSLKPKATVSELGFLTSQLSGIQISPSPLFPIISKPIS
Sbjct: 1   MAASGMLISNPSNVCFRKPQFSCSLKPKATVSELGFLTSQLSGIQISPSPLFPIISKPIS 60

Query: 61  APLKPSLQPVARRICPFTGKKSNKANRVSHSNHKTKRLQFVNLQYKRVWWEAGKRFVKLR 120
           APLKPSLQPVARRICPFTGKKSNKANRVSHSNHKTKRLQFVNLQYKRVWWEAGKRFVKLR
Sbjct: 61  APLKPSLQPVARRICPFTGKKSNKANRVSHSNHKTKRLQFVNLQYKRVWWEAGKRFVKLR 120

Query: 121 LSTKALKTIEKNGLDAVAKKAGIDLRKE 149
           LSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LSTKALKTIEKNGLDAVAKKAGIDLRKE 148

[Close]

BLAST of Spo14866.1 vs. NCBI nr
Match: gi|731320744|ref|XP_010670975.1| (PREDICTED: 50S ribosomal protein L28, chloroplastic [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 241.1 bits (614), Expect = 1.200e-60
Identity = 128/150 (85.33%), Postives = 137/150 (91.33%), Query Frame = 1


		  
Query: 2   AASGMLISNPS--NVCFRKPQFSCSLKPKATVSELGFLTSQLSGIQISPSPLFPII-SKP 61
           AASGMLISN +  NVCFRKPQFS S KPK+T+SELGFLTS+LSGI+IS SPL  II +KP
Sbjct: 5   AASGMLISNSTINNVCFRKPQFSTSFKPKSTISELGFLTSKLSGIKISLSPLSSIIINKP 64

Query: 62  ISAPLKPSLQPVARRICPFTGKKSNKANRVSHSNHKTKRLQFVNLQYKRVWWEAGKRFVK 121
           IS PLKPSLQPVARRICPFTGKK N+AN+VSHSNHKTKR QFVNLQYKRVWWEAGKRF+K
Sbjct: 65  ISLPLKPSLQPVARRICPFTGKKPNRANKVSHSNHKTKRRQFVNLQYKRVWWEAGKRFLK 124

Query: 122 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 149
           LRLSTKALKTIEKNGLDAVAKKAGIDL KE
Sbjct: 125 LRLSTKALKTIEKNGLDAVAKKAGIDLSKE 154

[Close]

BLAST of Spo14866.1 vs. NCBI nr
Match: gi|118487864|gb|ABK95755.1| (unknown [Populus trichocarpa])

HSP 1 Score: 194.9 bits (494), Expect = 1.000e-46
Identity = 106/150 (70.67%), Postives = 124/150 (82.67%), Query Frame = 1


		  
Query: 1   MAASGMLISNPSNVCFRKP-QFSCSLKPKATVSELGFLTSQLSGIQISPSPLFPIISKPI 60
           +   G+L+ N  ++CFRK  Q S S     +VSE+GF+TSQLSGI+IS +P      KP+
Sbjct: 8   VGVGGVLLGN--SICFRKTRQLSISKTSLVSVSEIGFVTSQLSGIRISYNP-----PKPL 67

Query: 61  SAPLKPSLQPV-ARRICPFTGKKSNKANRVSHSNHKTKRLQFVNLQYKRVWWEAGKRFVK 120
           SAP  P+LQPV ARRICPFTGKK+N+AN+VS SNHKTK+LQFVNLQYKRVWWEAGKR+VK
Sbjct: 68  SAPFSPALQPVIARRICPFTGKKANRANKVSFSNHKTKKLQFVNLQYKRVWWEAGKRYVK 127

Query: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 149
           LRLSTKALKTIEKNGLDAVAKKAGIDLRK+
Sbjct: 128 LRLSTKALKTIEKNGLDAVAKKAGIDLRKK 150

[Close]

BLAST of Spo14866.1 vs. NCBI nr
Match: gi|566189686|ref|XP_002315574.2| (hypothetical protein POPTR_0010s07920g [Populus trichocarpa])

HSP 1 Score: 194.5 bits (493), Expect = 1.300e-46
Identity = 106/146 (72.60%), Postives = 123/146 (84.25%), Query Frame = 1


		  
Query: 5   GMLISNPSNVCFRKPQ-FSCSLKPKATVSELGFLTSQLSGIQISPSPLFPIISKPISAPL 64
           G+L+ N  ++CFRK Q  S S     +VSE+GF+TSQLSGI+IS +P      KP+SAP 
Sbjct: 15  GVLLGN--SICFRKTQQLSISKTSLVSVSEIGFVTSQLSGIRISYNP-----PKPLSAPF 74

Query: 65  KPSLQPV-ARRICPFTGKKSNKANRVSHSNHKTKRLQFVNLQYKRVWWEAGKRFVKLRLS 124
            P+LQPV ARRICPFTGKK+N+AN+VS SNHKTK+LQFVNLQYKRVWWEAGKR+VKLRLS
Sbjct: 75  SPALQPVIARRICPFTGKKANRANKVSFSNHKTKKLQFVNLQYKRVWWEAGKRYVKLRLS 134

Query: 125 TKALKTIEKNGLDAVAKKAGIDLRKE 149
           TKALKTIEKNGLDAVAKKAGIDLRK+
Sbjct: 135 TKALKTIEKNGLDAVAKKAGIDLRKK 153

[Close]

BLAST of Spo14866.1 vs. NCBI nr
Match: gi|118489930|gb|ABK96762.1| (unknown [Populus trichocarpa x Populus deltoides])

HSP 1 Score: 193.0 bits (489), Expect = 3.800e-46
Identity = 105/146 (71.92%), Postives = 123/146 (84.25%), Query Frame = 1


		  
Query: 5   GMLISNPSNVCFRKPQ-FSCSLKPKATVSELGFLTSQLSGIQISPSPLFPIISKPISAPL 64
           G+L+ N  ++CFRK Q  S S     +VSE+GF+TSQLSGI+IS +P      +P+SAP 
Sbjct: 15  GVLLGN--SICFRKTQQLSISKTSLVSVSEIGFVTSQLSGIRISYNP-----PEPLSAPF 74

Query: 65  KPSLQPV-ARRICPFTGKKSNKANRVSHSNHKTKRLQFVNLQYKRVWWEAGKRFVKLRLS 124
            P+LQPV ARRICPFTGKK+N+AN+VS SNHKTK+LQFVNLQYKRVWWEAGKR+VKLRLS
Sbjct: 75  SPALQPVIARRICPFTGKKANRANKVSFSNHKTKKLQFVNLQYKRVWWEAGKRYVKLRLS 134

Query: 125 TKALKTIEKNGLDAVAKKAGIDLRKE 149
           TKALKTIEKNGLDAVAKKAGIDLRK+
Sbjct: 135 TKALKTIEKNGLDAVAKKAGIDLRKK 153

[Close]

BLAST of Spo14866.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RD02_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_085320 PE=3 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 1.600e-75
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 1


		  
Query: 1   MAASGMLISNPSNVCFRKPQFSCSLKPKATVSELGFLTSQLSGIQISPSPLFPIISKPIS 60
           MAASGMLISNPSNVCFRKPQFSCSLKPKATVSELGFLTSQLSGIQISPSPLFPIISKPIS
Sbjct: 1   MAASGMLISNPSNVCFRKPQFSCSLKPKATVSELGFLTSQLSGIQISPSPLFPIISKPIS 60

Query: 61  APLKPSLQPVARRICPFTGKKSNKANRVSHSNHKTKRLQFVNLQYKRVWWEAGKRFVKLR 120
           APLKPSLQPVARRICPFTGKKSNKANRVSHSNHKTKRLQFVNLQYKRVWWEAGKRFVKLR
Sbjct: 61  APLKPSLQPVARRICPFTGKKSNKANRVSHSNHKTKRLQFVNLQYKRVWWEAGKRFVKLR 120

Query: 121 LSTKALKTIEKNGLDAVAKKAGIDLRKE 149
           LSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LSTKALKTIEKNGLDAVAKKAGIDLRKE 148

[Close]

BLAST of Spo14866.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CWV5_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g048600 PE=3 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 8.500e-61
Identity = 128/150 (85.33%), Postives = 137/150 (91.33%), Query Frame = 1


		  
Query: 2   AASGMLISNPS--NVCFRKPQFSCSLKPKATVSELGFLTSQLSGIQISPSPLFPII-SKP 61
           AASGMLISN +  NVCFRKPQFS S KPK+T+SELGFLTS+LSGI+IS SPL  II +KP
Sbjct: 5   AASGMLISNSTINNVCFRKPQFSTSFKPKSTISELGFLTSKLSGIKISLSPLSSIIINKP 64

Query: 62  ISAPLKPSLQPVARRICPFTGKKSNKANRVSHSNHKTKRLQFVNLQYKRVWWEAGKRFVK 121
           IS PLKPSLQPVARRICPFTGKK N+AN+VSHSNHKTKR QFVNLQYKRVWWEAGKRF+K
Sbjct: 65  ISLPLKPSLQPVARRICPFTGKKPNRANKVSHSNHKTKRRQFVNLQYKRVWWEAGKRFLK 124

Query: 122 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 149
           LRLSTKALKTIEKNGLDAVAKKAGIDL KE
Sbjct: 125 LRLSTKALKTIEKNGLDAVAKKAGIDLSKE 154

[Close]

BLAST of Spo14866.1 vs. UniProtKB/TrEMBL
Match: A9PHA2_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 6.900e-47
Identity = 106/150 (70.67%), Postives = 124/150 (82.67%), Query Frame = 1


		  
Query: 1   MAASGMLISNPSNVCFRKP-QFSCSLKPKATVSELGFLTSQLSGIQISPSPLFPIISKPI 60
           +   G+L+ N  ++CFRK  Q S S     +VSE+GF+TSQLSGI+IS +P      KP+
Sbjct: 8   VGVGGVLLGN--SICFRKTRQLSISKTSLVSVSEIGFVTSQLSGIRISYNP-----PKPL 67

Query: 61  SAPLKPSLQPV-ARRICPFTGKKSNKANRVSHSNHKTKRLQFVNLQYKRVWWEAGKRFVK 120
           SAP  P+LQPV ARRICPFTGKK+N+AN+VS SNHKTK+LQFVNLQYKRVWWEAGKR+VK
Sbjct: 68  SAPFSPALQPVIARRICPFTGKKANRANKVSFSNHKTKKLQFVNLQYKRVWWEAGKRYVK 127

Query: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 149
           LRLSTKALKTIEKNGLDAVAKKAGIDLRK+
Sbjct: 128 LRLSTKALKTIEKNGLDAVAKKAGIDLRKK 150

[Close]

BLAST of Spo14866.1 vs. UniProtKB/TrEMBL
Match: B9HSH5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s07920g PE=3 SV=2)

HSP 1 Score: 194.5 bits (493), Expect = 9.100e-47
Identity = 106/146 (72.60%), Postives = 123/146 (84.25%), Query Frame = 1


		  
Query: 5   GMLISNPSNVCFRKPQ-FSCSLKPKATVSELGFLTSQLSGIQISPSPLFPIISKPISAPL 64
           G+L+ N  ++CFRK Q  S S     +VSE+GF+TSQLSGI+IS +P      KP+SAP 
Sbjct: 15  GVLLGN--SICFRKTQQLSISKTSLVSVSEIGFVTSQLSGIRISYNP-----PKPLSAPF 74

Query: 65  KPSLQPV-ARRICPFTGKKSNKANRVSHSNHKTKRLQFVNLQYKRVWWEAGKRFVKLRLS 124
            P+LQPV ARRICPFTGKK+N+AN+VS SNHKTK+LQFVNLQYKRVWWEAGKR+VKLRLS
Sbjct: 75  SPALQPVIARRICPFTGKKANRANKVSFSNHKTKKLQFVNLQYKRVWWEAGKRYVKLRLS 134

Query: 125 TKALKTIEKNGLDAVAKKAGIDLRKE 149
           TKALKTIEKNGLDAVAKKAGIDLRK+
Sbjct: 135 TKALKTIEKNGLDAVAKKAGIDLRKK 153

[Close]

BLAST of Spo14866.1 vs. UniProtKB/TrEMBL
Match: A9PK59_9ROSI (Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 2.600e-46
Identity = 105/146 (71.92%), Postives = 123/146 (84.25%), Query Frame = 1


		  
Query: 5   GMLISNPSNVCFRKPQ-FSCSLKPKATVSELGFLTSQLSGIQISPSPLFPIISKPISAPL 64
           G+L+ N  ++CFRK Q  S S     +VSE+GF+TSQLSGI+IS +P      +P+SAP 
Sbjct: 15  GVLLGN--SICFRKTQQLSISKTSLVSVSEIGFVTSQLSGIRISYNP-----PEPLSAPF 74

Query: 65  KPSLQPV-ARRICPFTGKKSNKANRVSHSNHKTKRLQFVNLQYKRVWWEAGKRFVKLRLS 124
            P+LQPV ARRICPFTGKK+N+AN+VS SNHKTK+LQFVNLQYKRVWWEAGKR+VKLRLS
Sbjct: 75  SPALQPVIARRICPFTGKKANRANKVSFSNHKTKKLQFVNLQYKRVWWEAGKRYVKLRLS 134

Query: 125 TKALKTIEKNGLDAVAKKAGIDLRKE 149
           TKALKTIEKNGLDAVAKKAGIDLRK+
Sbjct: 135 TKALKTIEKNGLDAVAKKAGIDLRKK 153

[Close]

BLAST of Spo14866.1 vs. ExPASy Swiss-Prot
Match: RK28_TOBAC (50S ribosomal protein L28, chloroplastic OS=Nicotiana tabacum GN=RPL28 PE=1 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 2.900e-46
Identity = 97/125 (77.60%), Postives = 108/125 (86.40%), Query Frame = 1


		  
Query: 24  SLKPKATVSELGFLTSQLSGIQISPSPLFPIISKPISAPLKPSLQPVARRICPFTGKKSN 83
           SL      SEL F+TSQLSG++IS S  F   S P+S P KPSLQPVARRICPFTGKKSN
Sbjct: 28  SLPQSKLSSELSFVTSQLSGLKIS-STHFISSSAPLSVPFKPSLQPVARRICPFTGKKSN 87

Query: 84  KANRVSHSNHKTKRLQFVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGI 143
           +AN+VSHSNHKTK+LQFVNLQYKR+WWEAGKR+VKLRLSTKA+KTIEKNGLDAVAKKAGI
Sbjct: 88  RANKVSHSNHKTKKLQFVNLQYKRIWWEAGKRYVKLRLSTKAIKTIEKNGLDAVAKKAGI 147

Query: 144 DLRKE 149
           DL K+
Sbjct: 148 DLSKK 151

[Close]

BLAST of Spo14866.1 vs. ExPASy Swiss-Prot
Match: RK28_ARATH (50S ribosomal protein L28, chloroplastic OS=Arabidopsis thaliana GN=RPL28 PE=2 SV=2)

HSP 1 Score: 176.0 bits (445), Expect = 3.000e-43
Identity = 96/124 (77.42%), Postives = 108/124 (87.10%), Query Frame = 1


		  
Query: 26  KPKATVSELGFLTSQLSGIQISPSPLFPIISKPISAPLKPSLQP-VARRICPFTGKKSNK 85
           K   T  ELGFLTSQLSG++IS +P   +I++ IS P  P +QP VARRICPFTGKK+N+
Sbjct: 22  KSTVTSKELGFLTSQLSGLRISYTPS-DVINR-ISLPSFPGIQPIVARRICPFTGKKANR 81

Query: 86  ANRVSHSNHKTKRLQFVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGID 145
           AN+VS SNHKTK+LQFVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGID
Sbjct: 82  ANKVSFSNHKTKKLQFVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGID 141

Query: 146 LRKE 149
           LRK+
Sbjct: 142 LRKK 143

[Close]

BLAST of Spo14866.1 vs. ExPASy Swiss-Prot
Match: RL28_THEEB (50S ribosomal protein L28 OS=Thermosynechococcus elongatus (strain BP-1) GN=rpmB PE=3 SV=2)

HSP 1 Score: 103.2 bits (256), Expect = 2.500e-21
Identity = 48/75 (64.00%), Postives = 62/75 (82.67%), Query Frame = 1


		  
Query: 73  RICPFTGKKSNKANRVSHSNHKTKRLQFVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKN 132
           R+C  TGKK+N A  +SHS+ +TK+LQ VNLQ+KRVWW  GKR+V+LRLSTKA+KT+E+ 
Sbjct: 3   RVCQLTGKKANNAYAISHSHRRTKKLQQVNLQWKRVWWPEGKRWVRLRLSTKAIKTLERK 62

Query: 133 GLDAVAKKAGIDLRK 148
           GL A AK+AG+DL K
Sbjct: 63  GLSAFAKEAGLDLNK 77

[Close]

BLAST of Spo14866.1 vs. ExPASy Swiss-Prot
Match: RL28_CYAP4 (50S ribosomal protein L28 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rpmB PE=3 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 4.200e-21
Identity = 48/75 (64.00%), Postives = 62/75 (82.67%), Query Frame = 1


		  
Query: 73  RICPFTGKKSNKANRVSHSNHKTKRLQFVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKN 132
           R+C  TGK++N A  VSHS+ +TK+LQ VNLQ+KR+WW  GKR+V+LRLSTKALKT+E  
Sbjct: 3   RVCQLTGKRANNAYAVSHSHRRTKKLQEVNLQWKRIWWPQGKRWVRLRLSTKALKTLEHK 62

Query: 133 GLDAVAKKAGIDLRK 148
           GLD+ A++AGIDL K
Sbjct: 63  GLDSFAREAGIDLNK 77

[Close]

BLAST of Spo14866.1 vs. ExPASy Swiss-Prot
Match: RL28_SYNP2 (50S ribosomal protein L28 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rpmB PE=3 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 4.200e-21
Identity = 49/75 (65.33%), Postives = 62/75 (82.67%), Query Frame = 1


		  
Query: 73  RICPFTGKKSNKANRVSHSNHKTKRLQFVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKN 132
           R C  TGKK+N A  VSHS+ +TK+LQ VNLQ+KRVWW  G RFV+LRLSTKA+KT+EK 
Sbjct: 3   RKCQITGKKANNAMAVSHSHRRTKKLQEVNLQWKRVWWPEGNRFVRLRLSTKAIKTLEKK 62

Query: 133 GLDAVAKKAGIDLRK 148
           G+DA+A++AGI+L K
Sbjct: 63  GIDAMAREAGINLNK 77

[Close]

BLAST of Spo14866.1 vs. TAIR (Arabidopsis)
Match: AT2G33450.1 (Ribosomal L28 family)

HSP 1 Score: 176.0 bits (445), Expect = 1.700e-44
Identity = 96/124 (77.42%), Postives = 108/124 (87.10%), Query Frame = 1


		  
Query: 26  KPKATVSELGFLTSQLSGIQISPSPLFPIISKPISAPLKPSLQP-VARRICPFTGKKSNK 85
           K   T  ELGFLTSQLSG++IS +P   +I++ IS P  P +QP VARRICPFTGKK+N+
Sbjct: 22  KSTVTSKELGFLTSQLSGLRISYTPS-DVINR-ISLPSFPGIQPIVARRICPFTGKKANR 81

Query: 86  ANRVSHSNHKTKRLQFVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGID 145
           AN+VS SNHKTK+LQFVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGID
Sbjct: 82  ANKVSFSNHKTKKLQFVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGID 141

Query: 146 LRKE 149
           LRK+
Sbjct: 142 LRKK 143

The following BLAST results are available for this feature:

BLAST of Spo14866.1 vs. NCBI nr
BLAST of Spo14866.1 vs. UniProtKB/TrEMBL
BLAST of Spo14866.1 vs. ExPASy Swiss-Prot
BLAST of Spo14866.1 vs. TAIR (Arabidopsis)

BLAST of Spo14866.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902212074\|gb\|KNA16864.1\|	2.3e-75	100.	hypothetical protein SOVF_0853...	[more]
gi\|731320744\|ref\|XP_010670975.1\|	1.2e-60	85.3	PREDICTED: 50S ribosomal prote...	[more]
gi\|118487864\|gb\|ABK95755.1\|	1.0e-46	70.6	unknown [Populus trichocarpa]	[more]
gi\|566189686\|ref\|XP_002315574.2\|	1.3e-46	72.6	hypothetical protein POPTR_001...	[more]
gi\|118489930\|gb\|ABK96762.1\|	3.8e-46	71.9	unknown [Populus trichocarpa x...	[more]

BLAST of Spo14866.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9RD02_SPIOL	1.6e-75	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8CWV5_BETVU	8.5e-61	85.3	Uncharacterized protein OS=Bet...	[more]
A9PHA2_POPTR	6.9e-47	70.6	Putative uncharacterized prote...	[more]
B9HSH5_POPTR	9.1e-47	72.6	Uncharacterized protein OS=Pop...	[more]
A9PK59_9ROSI	2.6e-46	71.9	Putative uncharacterized prote...	[more]

BLAST of Spo14866.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
RK28_TOBAC	2.9e-46	77.6	50S ribosomal protein L28, chl...	[more]
RK28_ARATH	3.0e-43	77.4	50S ribosomal protein L28, chl...	[more]
RL28_THEEB	2.5e-21	64.0	50S ribosomal protein L28 OS=T...	[more]
RL28_CYAP4	4.2e-21	64.0	50S ribosomal protein L28 OS=C...	[more]
RL28_SYNP2	4.2e-21	65.3	50S ribosomal protein L28 OS=S...	[more]

BLAST of Spo14866.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1


Match Name	E-value	Identity	Description
AT2G33450.1	1.7e-44	77.4	Ribosomal L28 family	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001383	Ribosomal protein L28	HAMAP	MF_00373	Ribosomal_L28	coord: 70..146 score: 1
IPR001383	Ribosomal protein L28	TIGRFAMs	TIGR00009	TIGR00009	coord: 73..128 score: 6.4
IPR026569	Ribosomal protein L28/L24	PANTHER	PTHR13528	39S RIBOSOMAL PROTEIN L28, MITOCHONDRIAL	coord: 5..147 score: 6.3
IPR026569	Ribosomal protein L28/L24	PFAM	PF00830	Ribosomal_L28	coord: 73..131 score: 1.0
None	No IPR available	GENE3D	2.30.170.40		coord: 73..146 score: 4.6
None	No IPR available	PANTHER	PTHR13528:SF6	50S RIBOSOMAL PROTEIN L28, CHLOROPLASTIC	coord: 5..147 score: 6.3
None	No IPR available	unknown	SSF143800	L28p-like	coord: 73..145 score: 3.92

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003735	structural constituent of ribosome