Spo14104.1 (mRNA) | SpinachBase

Overview


Name	Spo14104.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	(BnaC09g16480D protein) (BnaC09g26880D protein) (BnaC09g29120D protein) (BnaUnng00820D protein)
Location	Super_scaffold_89 : 239626 .. 240100 (+)
Sequence length	417

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGGCGAGTGCCTGATCGAATTGATCGGGCCATGTAGGAACAAGGTTCAAGTCTGTGGGTCTGTTAGGATGCCTCAGCTGCATACATTACTGCACTTCCACTTGACACCTATCGTAATGATAAACGACTCGTCTCGTCGTGACCTTCTCTTTCCAAACTTCTGTCGCTCAACCCTCAGGGGCAACGAAGAGAAGCCATCGCTGGGGTCAGAGAACCCGTCGCTGCCTCAGTTGTGCTATCGGCGGCTCTGGGGAAGTAGGAATCGGTGAGCACTTATCTTGGGGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCGTTTACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACTAGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACGGGATATGGACCAAACTGTCTCACGACGTTCTGA

mRNA sequence

ATGGATGGCGAGTGCCTGATCGAATTGATCGGGCCATGTAGGAACAAGGTTCAAGTCTGTGGGTCTGTTAGGATGCCTCAGCTGCATACATTACTGCACTTCCACTTGACACCTATCGTAATGATAAACGACTCGTCTCGTCGTGACCTTCTCTTTCCAAACTTCTGTCGCTCAACCCTCAGGGGCAACGAAGAGAAGCCATCGCTGGGGTCAGAGAACCCGTCGCTGCCTCAGTTGTGCTATCGGCGGCTCTGGGGAATTATCCGCTCCGCACTTGGCTACCCAGCGTTTACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACTAGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACGGGATATGGACCAAACTGTCTCACGACGTTCTGA

Coding sequence (CDS)

ATGGATGGCGAGTGCCTGATCGAATTGATCGGGCCATGTAGGAACAAGGTTCAAGTCTGTGGGTCTGTTAGGATGCCTCAGCTGCATACATTACTGCACTTCCACTTGACACCTATCGTAATGATAAACGACTCGTCTCGTCGTGACCTTCTCTTTCCAAACTTCTGTCGCTCAACCCTCAGGGGCAACGAAGAGAAGCCATCGCTGGGGTCAGAGAACCCGTCGCTGCCTCAGTTGTGCTATCGGCGGCTCTGGGGAATTATCCGCTCCGCACTTGGCTACCCAGCGTTTACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACTAGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACGGGATATGGACCAAACTGTCTCACGACGTTCTGA

Protein sequence

MDGECLIELIGPCRNKVQVCGSVRMPQLHTLLHFHLTPIVMINDSSRRDLLFPNFCRSTLRGNEEKPSLGSENPSLPQLCYRRLWGIIRSALGYPAFTVGTITGTPEVRPSRSSRTRERSSQCSNAHTGYGPNCLTTF

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo14104	Spo14104	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo14104.1	Spo14104.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo14104.1.exon.1	Spo14104.1.exon.1	exon
Spo14104.1.exon.2	Spo14104.1.exon.2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo14104.1.CDS.1	Spo14104.1.CDS.1	CDS
Spo14104.1.CDS.2	Spo14104.1.CDS.2	CDS

Homology

[Close]

BLAST of Spo14104.1 vs. NCBI nr
Match: gi|675895250|ref|YP_009049724.1| (hypothetical protein (mitochondrion) [Capsicum annuum])

HSP 1 Score: 120.9 bits (302), Expect = 1.700e-24
Identity = 62/89 (69.66%), Postives = 66/89 (74.16%), Query Frame = 1

		  
Query: 1  MDGECLIELIGPCRNKVQVCGSVRMPQLHTLLHFHLTPIVMINDSSRRDLLF---PNFCR 60
          +DGECLIELI  CRNKVQV  SVRMPQLHT LHFHLTPIVMIN SSRRDLL     NFCR
Sbjct: 3  IDGECLIELIRSCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQKNFCR 62

Query: 61 STLRGNEEKPSLGSENPSLPQLCYRRLWG 87
          S           G+ENPSL +LCYR+LWG
Sbjct: 63 SI--------PAGAENPSLSRLCYRKLWG 83

[Close]

BLAST of Spo14104.1 vs. NCBI nr
Match: gi|763808938|gb|KJB75840.1| (hypothetical protein B456_012G060700 [Gossypium raimondii])

HSP 1 Score: 119.4 bits (298), Expect = 5.000e-24
Identity = 60/88 (68.18%), Postives = 64/88 (72.73%), Query Frame = 1

		  
Query: 1  MDGECLIELIGPCRNKVQVCGSVRMPQLHTLLHFHLTPIVMINDSSRRDLLF--PNFCRS 60
          +DGECLIELIG CRNKVQ+  SVRMPQLHTLLHFHLTPIVMIN  SRRDLL    NFC S
Sbjct: 3  IDGECLIELIGSCRNKVQIYRSVRMPQLHTLLHFHLTPIVMINSPSRRDLLLNSQNFCHS 62

Query: 61 TLRGNEEKPSLGSENPSLPQLCYRRLWG 87
                     G+ENP   +LCYRRLWG
Sbjct: 63 I--------PAGTENPLSSRLCYRRLWG 82

[Close]

BLAST of Spo14104.1 vs. NCBI nr
Match: gi|674871092|emb|CDY63594.1| (BnaUnng00820D [Brassica napus])

HSP 1 Score: 118.2 bits (295), Expect = 1.100e-23
Identity = 61/88 (69.32%), Postives = 64/88 (72.73%), Query Frame = 1

		  
Query: 1  MDGECLIELIGPCRNKVQVCGSVRMPQLHTLLHFHLTPIVMINDSSRRDLLF--PNFCRS 60
          +DGECLIELI  CRNKVQV  SVRMPQLHT LHFHLTPIVMIN SSRRDLL    NFC S
Sbjct: 3  IDGECLIELIRSCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQNFCHS 62

Query: 61 TLRGNEEKPSLGSENPSLPQLCYRRLWG 87
                     G+ENP L +LCYRRLWG
Sbjct: 63 I--------PAGAENPLLSRLCYRRLWG 82

[Close]

BLAST of Spo14104.1 vs. NCBI nr
Match: gi|78103323|ref|YP_358637.1| (hypothetical protein PhapfoPp091 [Phalaenopsis aphrodite subsp. formosana])

HSP 1 Score: 117.9 bits (294), Expect = 1.400e-23
Identity = 59/88 (67.05%), Postives = 65/88 (73.86%), Query Frame = 1

		  
Query: 1  MDGECLIELIGPCRNKVQVCGSVRMPQLHTLLHFHLTPIVMINDSSRRDLLFPN--FCRS 60
          +DGECLIELI  CRNKVQ+  SVRMPQLHT LHFHLTPIVMIN SSRRDL+  +  FCRS
Sbjct: 3  IDGECLIELIRSCRNKVQISRSVRMPQLHTSLHFHLTPIVMINGSSRRDLILDSQYFCRS 62

Query: 61 TLRGNEEKPSLGSENPSLPQLCYRRLWG 87
                     G+ENP L +LCYRRLWG
Sbjct: 63 I--------PTGAENPPLSRLCYRRLWG 82

[Close]

BLAST of Spo14104.1 vs. NCBI nr
Match: gi|703133119|ref|XP_010105288.1| (hypothetical protein L484_000614 [Morus notabilis])

HSP 1 Score: 117.1 bits (292), Expect = 2.500e-23
Identity = 63/90 (70.00%), Postives = 65/90 (72.22%), Query Frame = 1

		  
Query: 1  MDGECLIELIGPCRNKVQV--CGSVRMPQLHTLLHFHLTPIVMINDSSRRDLLF--PNFC 60
          +DGECLIELIG CRNKVQV  C  VRMPQLHT LHFHLTPIVMIN SSRRDLL    NF 
Sbjct: 3  IDGECLIELIGSCRNKVQVYRCIPVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQNFY 62

Query: 61 RSTLRGNEEKPSLGSENPSLPQLCYRRLWG 87
           ST          G+ENPSL  LCYRRLWG
Sbjct: 63 HST--------PAGAENPSLSWLCYRRLWG 84

[Close]

BLAST of Spo14104.1 vs. UniProtKB/TrEMBL
Match: M1D939_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400034831 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.200e-24
Identity = 62/89 (69.66%), Postives = 66/89 (74.16%), Query Frame = 1

		  
Query: 1  MDGECLIELIGPCRNKVQVCGSVRMPQLHTLLHFHLTPIVMINDSSRRDLLF---PNFCR 60
          +DGECLIELI  CRNKVQV  SVRMPQLHT LHFHLTPIVMIN SSRRDLL     NFCR
Sbjct: 3  IDGECLIELIRSCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQKNFCR 62

Query: 61 STLRGNEEKPSLGSENPSLPQLCYRRLWG 87
          S           G+ENPSL +LCYR+LWG
Sbjct: 63 SI--------PAGAENPSLSRLCYRKLWG 83

[Close]

BLAST of Spo14104.1 vs. UniProtKB/TrEMBL
Match: A0A075VX86_CAPAN (Uncharacterized protein OS=Capsicum annuum GN=orf132a PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.200e-24
Identity = 62/89 (69.66%), Postives = 66/89 (74.16%), Query Frame = 1

		  
Query: 1  MDGECLIELIGPCRNKVQVCGSVRMPQLHTLLHFHLTPIVMINDSSRRDLLF---PNFCR 60
          +DGECLIELI  CRNKVQV  SVRMPQLHT LHFHLTPIVMIN SSRRDLL     NFCR
Sbjct: 3  IDGECLIELIRSCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQKNFCR 62

Query: 61 STLRGNEEKPSLGSENPSLPQLCYRRLWG 87
          S           G+ENPSL +LCYR+LWG
Sbjct: 63 SI--------PAGAENPSLSRLCYRKLWG 83

[Close]

BLAST of Spo14104.1 vs. UniProtKB/TrEMBL
Match: A0A0D2VW10_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G060700 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 3.500e-24
Identity = 60/88 (68.18%), Postives = 64/88 (72.73%), Query Frame = 1

		  
Query: 1  MDGECLIELIGPCRNKVQVCGSVRMPQLHTLLHFHLTPIVMINDSSRRDLLF--PNFCRS 60
          +DGECLIELIG CRNKVQ+  SVRMPQLHTLLHFHLTPIVMIN  SRRDLL    NFC S
Sbjct: 3  IDGECLIELIGSCRNKVQIYRSVRMPQLHTLLHFHLTPIVMINSPSRRDLLLNSQNFCHS 62

Query: 61 TLRGNEEKPSLGSENPSLPQLCYRRLWG 87
                     G+ENP   +LCYRRLWG
Sbjct: 63 I--------PAGTENPLSSRLCYRRLWG 82

[Close]

BLAST of Spo14104.1 vs. UniProtKB/TrEMBL
Match: A0A078G2W2_BRANA (BnaC09g16480D protein OS=Brassica napus GN=BnaC09g29120D PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 7.700e-24
Identity = 61/88 (69.32%), Postives = 64/88 (72.73%), Query Frame = 1

		  
Query: 1  MDGECLIELIGPCRNKVQVCGSVRMPQLHTLLHFHLTPIVMINDSSRRDLLF--PNFCRS 60
          +DGECLIELI  CRNKVQV  SVRMPQLHT LHFHLTPIVMIN SSRRDLL    NFC S
Sbjct: 3  IDGECLIELIRSCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQNFCHS 62

Query: 61 TLRGNEEKPSLGSENPSLPQLCYRRLWG 87
                     G+ENP L +LCYRRLWG
Sbjct: 63 I--------PAGAENPLLSRLCYRRLWG 82

[Close]

BLAST of Spo14104.1 vs. UniProtKB/TrEMBL
Match: A0A0D2ZTA1_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 7.700e-24
Identity = 61/88 (69.32%), Postives = 64/88 (72.73%), Query Frame = 1

		  
Query: 1  MDGECLIELIGPCRNKVQVCGSVRMPQLHTLLHFHLTPIVMINDSSRRDLLF--PNFCRS 60
          +DGECLIELI  CRNKVQV  SVRMPQLHT LHFHLTPIVMIN SSRRDLL    NFC S
Sbjct: 3  IDGECLIELIRSCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQNFCHS 62

Query: 61 TLRGNEEKPSLGSENPSLPQLCYRRLWG 87
                     G+ENP L +LCYRRLWG
Sbjct: 63 I--------PAGAENPLLSRLCYRRLWG 82

The following BLAST results are available for this feature:

BLAST of Spo14104.1 vs. NCBI nr
BLAST of Spo14104.1 vs. UniProtKB/TrEMBL
BLAST of Spo14104.1 vs. ExPASy Swiss-Prot
BLAST of Spo14104.1 vs. TAIR (Arabidopsis)

BLAST of Spo14104.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
gi\|675895250\|ref\|YP_009049724.1\|	1.7e-24	69.6	hypothetical protein (mitochon...	[more]
gi\|763808938\|gb\|KJB75840.1\|	5.0e-24	68.1	hypothetical protein B456_012G...	[more]
gi\|674871092\|emb\|CDY63594.1\|	1.1e-23	69.3	BnaUnng00820D [Brassica napus]	[more]
gi\|78103323\|ref\|YP_358637.1\|	1.4e-23	67.0	hypothetical protein PhapfoPp0...	[more]
gi\|703133119\|ref\|XP_010105288.1\|	2.5e-23	70.0	hypothetical protein L484_0006...	[more]

BLAST of Spo14104.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
M1D939_SOLTU	1.2e-24	69.6	Uncharacterized protein OS=Sol...	[more]
A0A075VX86_CAPAN	1.2e-24	69.6	Uncharacterized protein OS=Cap...	[more]
A0A0D2VW10_GOSRA	3.5e-24	68.1	Uncharacterized protein OS=Gos...	[more]
A0A078G2W2_BRANA	7.7e-24	69.3	BnaC09g16480D protein OS=Brass...	[more]
A0A0D2ZTA1_BRAOL	7.7e-24	69.3	Uncharacterized protein OS=Bra...	[more]

BLAST of Spo14104.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo14104.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009507	chloroplast