Spo17519.1 (mRNA) | SpinachBase

Overview


Name	Spo17519.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	chr1 : 2734147 .. 2735204 (+)
Sequence length	806

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTACACTTCATGCAACAACTGCAAATCAAGAGTAGATGAGAATCAATACAACAACAAATGCCAAGATTTCCCAGAATTCCCCATCAACAGGTGGAGTACCATTACTATATCCAATATAATATACCACAATAACATCAACATATCTAATATCATCTACTGTAGGTACCGAATAATTGCCACAATTGATGACGGAAACGCAACGATGACTGTGGCGATCTTTGACAAAGACGTGGAAAAAATTATTGCAAACCCTATAGCATCAATGATGAAGATTTATGATCAGGTAAGACATTCACAATAATCAAATACACAAAGATAACAAAATGCGATGACATACACAATAATTACAATGCAAATCCAGGAAAAGGGGGTCGAGAAGGTTTCAAATGAACTACAACAATGCGTAGGGAAGACATGTACACTCAAGCTCAAAGTCAACAACAAAAGCTACATACAAGAGTTAACTGCTATAAAGGTCTTCCATGTTGAGACAGAGGAAAAAATAACAACAAAACGACACGGGAAGGAGAAACTCAAAGAAATAAAAAAAAGGAGGGCCAACCAAACAAAAAACACAAGAACAATAGGTAATGACTCGGAAAAACATATTAAAATAACAAACCCAAAATACTAGCAACAGCCGTAGTGTTTATAAAATGTAACACTAACATGTTCATAAAATGAAACAGGGTCGACACACCAACAGAGGAGATCCCTACAACGAGCATATCACCAACTACAAACCAAGACCCAATACAACAGGCGGACGACGAAACCAACTACTAAATGATGAGCAAAGTTCAAACGCTCATGTGCGTTGCATGAGTCCTTACTTTTATAAATTTCAAAACCATCTTAACAAATTACTTTTACATATTTAATAGATTTGGTTACTATTTAACCTTCATAGATTTTGGGGTTAAACAATAGAGATAAATACAATAAATAAAGAAAATTTCAGTGGCAGAAACAAAGGTGCAAAGTGTGCAAAGTGTGGGACTTACAGGAGATTACATACATATTAGTGGTATGACAACAATTAATAATAGTACTTAT

mRNA sequence

ATGTACACTTCATGCAACAACTGCAAATCAAGAGTAGATGAGAATCAATACAACAACAAATGCCAAGATTTCCCAGAATTCCCCATCAACAGGTACCGAATAATTGCCACAATTGATGACGGAAACGCAACGATGACTGTGGCGATCTTTGACAAAGACGTGGAAAAAATTATTGCAAACCCTATAGCATCAATGATGAAGATTTATGATCAGGAAAAGGGGGTCGAGAAGGTTTCAAATGAACTACAACAATGCGTAGGGAAGACATGTACACTCAAGCTCAAAGTCAACAACAAAAGCTACATACAAGAGTTAACTGCTATAAAGGTCTTCCATGTTGAGACAGAGGAAAAAATAACAACAAAACGACACGGGAAGGAGAAACTCAAAGAAATAAAAAAAAGGAGGGCCAACCAAACAAAAAACACAAGAACAATAGGGTCGACACACCAACAGAGGAGATCCCTACAACGAGCATATCACCAACTACAAACCAAGACCCAATACAACAGGCGGACGACGAAACCAACTACTAAATGATGAGCAAAGTTCAAACGCTCATGTGCGTTGCATGAGTCCTTACTTTTATAAATTTCAAAACCATCTTAACAAATTACTTTTACATATTTAATAGATTTGGTTACTATTTAACCTTCATAGATTTTGGGGTTAAACAATAGAGATAAATACAATAAATAAAGAAAATTTCAGTGGCAGAAACAAAGGTGCAAAGTGTGCAAAGTGTGGGACTTACAGGAGATTACATACATATTAGTGGTATGACAACAATTAATAATAGTACTTAT

Coding sequence (CDS)

ATGTACACTTCATGCAACAACTGCAAATCAAGAGTAGATGAGAATCAATACAACAACAAATGCCAAGATTTCCCAGAATTCCCCATCAACAGGTACCGAATAATTGCCACAATTGATGACGGAAACGCAACGATGACTGTGGCGATCTTTGACAAAGACGTGGAAAAAATTATTGCAAACCCTATAGCATCAATGATGAAGATTTATGATCAGGAAAAGGGGGTCGAGAAGGTTTCAAATGAACTACAACAATGCGTAGGGAAGACATGTACACTCAAGCTCAAAGTCAACAACAAAAGCTACATACAAGAGTTAACTGCTATAAAGGTCTTCCATGTTGAGACAGAGGAAAAAATAACAACAAAACGACACGGGAAGGAGAAACTCAAAGAAATAAAAAAAAGGAGGGCCAACCAAACAAAAAACACAAGAACAATAGGGTCGACACACCAACAGAGGAGATCCCTACAACGAGCATATCACCAACTACAAACCAAGACCCAATACAACAGGCGGACGACGAAACCAACTACTAAATGA

Protein sequence

MYTSCNNCKSRVDENQYNNKCQDFPEFPINRYRIIATIDDGNATMTVAIFDKDVEKIIANPIASMMKIYDQEKGVEKVSNELQQCVGKTCTLKLKVNNKSYIQELTAIKVFHVETEEKITTKRHGKEKLKEIKKRRANQTKNTRTIGSTHQQRRSLQRAYHQLQTKTQYNRRTTKPTTK

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo17519	Spo17519	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo17519.1	Spo17519.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo17519.1.exon.1	Spo17519.1.exon.1	exon
Spo17519.1.exon.2	Spo17519.1.exon.2	exon
Spo17519.1.exon.3	Spo17519.1.exon.3	exon
Spo17519.1.exon.4	Spo17519.1.exon.4	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo17519.1.CDS.1	Spo17519.1.CDS.1	CDS
Spo17519.1.CDS.2	Spo17519.1.CDS.2	CDS
Spo17519.1.CDS.3	Spo17519.1.CDS.3	CDS
Spo17519.1.CDS.4	Spo17519.1.CDS.4	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo17519.1.utr3p.1	Spo17519.1.utr3p.1	three_prime_UTR

Homology

[Close]

BLAST of Spo17519.1 vs. NCBI nr
Match: gi|731344925|ref|XP_010683662.1| (PREDICTED: replication factor A protein 1-like isoform X1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 84.7 bits (208), Expect = 1.800e-13
Identity = 49/173 (28.32%), Postives = 91/173 (52.60%), Query Frame = 1

		  
Query: 2   YTSCNNCKSRVDENQYNNKCQDFPEFPINRYRIIATIDDGNATMTVAIFDKDVEKIIANP 61
           Y SC+ CK+++DE  Y  KC    ++P  RY +   IDDG+A + +A+FDK+ E++I +P
Sbjct: 300 YNSCDACKTKIDETSYCTKCDVVVKYPKIRYLLTVDIDDGSACVPLALFDKEAERVIGSP 359

Query: 62  IASMMKIYDQEKGVEKVSNELQQCVGKTCTLKLKVNNKSYIQELTAIKVFHVETEEKITT 121
           +  ++ +  +E G EKV+  LQ C+GK    ++K++ +S   EL   + F    + + + 
Sbjct: 360 VNKLLDLQKKENGNEKVTERLQICIGKNFAFRVKLSTRSETTELICQRTFETNYQLEKSF 419

Query: 122 KRHGKEKLKEIKKRRAN-----QTKNTRTIGSTHQQRRSLQRAYHQLQTKTQY 170
           +    + +  IKK +         KN  T+ +  Q  + L  +      ++Q+
Sbjct: 420 EEQQHKDMASIKKEKGQDADIINAKNPTTVETGSQGSQVLDDSGEDTNIESQF 472

[Close]

BLAST of Spo17519.1 vs. NCBI nr
Match: gi|731316030|ref|XP_010693938.1| (PREDICTED: replication factor A protein 1-like isoform X1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 84.7 bits (208), Expect = 1.800e-13
Identity = 49/173 (28.32%), Postives = 91/173 (52.60%), Query Frame = 1

		  
Query: 2   YTSCNNCKSRVDENQYNNKCQDFPEFPINRYRIIATIDDGNATMTVAIFDKDVEKIIANP 61
           Y SC+ CK+++DE  Y  KC    ++P  RY +   IDDG+A + +A+FDK+ E++I +P
Sbjct: 300 YNSCDACKTKIDETSYCTKCDVVVKYPKIRYLLTVDIDDGSACVPLALFDKEAERVIGSP 359

Query: 62  IASMMKIYDQEKGVEKVSNELQQCVGKTCTLKLKVNNKSYIQELTAIKVFHVETEEKITT 121
           +  ++ +  +E G EKV+  LQ C+GK    ++K++ +S   EL   + F    + + + 
Sbjct: 360 VNKLLDLQKKENGNEKVTERLQICIGKNFAFRVKLSTRSETTELICQRTFETNYQLEKSF 419

Query: 122 KRHGKEKLKEIKKRRAN-----QTKNTRTIGSTHQQRRSLQRAYHQLQTKTQY 170
           +    + +  IKK +         KN  T+ +  Q  + L  +      ++Q+
Sbjct: 420 EEQQHKDMASIKKEKGQDADIINAKNPTTVETGSQGSQVLDDSGEDTNIESQF 472

[Close]

BLAST of Spo17519.1 vs. NCBI nr
Match: gi|731316032|ref|XP_010693948.1| (PREDICTED: replication factor A protein 1-like isoform X2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 81.6 bits (200), Expect = 1.500e-12
Identity = 46/168 (27.38%), Postives = 90/168 (53.57%), Query Frame = 1

		  
Query: 2   YTSCNNCKSRVDENQYNNKCQDFPEFPINRYRIIATIDDGNATMTVAIFDKDVEKIIANP 61
           Y SC+ CK+++DE  Y  KC    ++P  RY +   IDDG+A + +A+FDK+ E++I +P
Sbjct: 300 YNSCDACKTKIDETSYCTKCDVVVKYPKIRYLLTVDIDDGSACVPLALFDKEAERVIGSP 359

Query: 62  IASMMKIYDQEKGVEKVSNELQQCVGKTCTLKLKVNNKSYIQELTAIKVFHVETEEKITT 121
           +  ++ +  +E G EKV+  LQ C+GK    ++K++ +S   EL   + F    + + + 
Sbjct: 360 VNKLLDLQKKENGNEKVTERLQICIGKNFAFRVKLSTRSETTELICQRTFETNYQLEKSF 419

Query: 122 KRHGKEKLKEIKKRRANQTKNTRTIGSTHQQRRSLQRAYHQLQTKTQY 170
           +    + +++ +       KN  T+ +  Q  + L  +      ++Q+
Sbjct: 420 EEQQHKDMEKGQDADIINAKNPTTVETGSQGSQVLDDSGEDTNIESQF 467

[Close]

BLAST of Spo17519.1 vs. NCBI nr
Match: gi|731344929|ref|XP_010683664.1| (PREDICTED: replication factor A protein 1-like isoform X2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 81.6 bits (200), Expect = 1.500e-12
Identity = 46/168 (27.38%), Postives = 90/168 (53.57%), Query Frame = 1

		  
Query: 2   YTSCNNCKSRVDENQYNNKCQDFPEFPINRYRIIATIDDGNATMTVAIFDKDVEKIIANP 61
           Y SC+ CK+++DE  Y  KC    ++P  RY +   IDDG+A + +A+FDK+ E++I +P
Sbjct: 300 YNSCDACKTKIDETSYCTKCDVVVKYPKIRYLLTVDIDDGSACVPLALFDKEAERVIGSP 359

Query: 62  IASMMKIYDQEKGVEKVSNELQQCVGKTCTLKLKVNNKSYIQELTAIKVFHVETEEKITT 121
           +  ++ +  +E G EKV+  LQ C+GK    ++K++ +S   EL   + F    + + + 
Sbjct: 360 VNKLLDLQKKENGNEKVTERLQICIGKNFAFRVKLSTRSETTELICQRTFETNYQLEKSF 419

Query: 122 KRHGKEKLKEIKKRRANQTKNTRTIGSTHQQRRSLQRAYHQLQTKTQY 170
           +    + +++ +       KN  T+ +  Q  + L  +      ++Q+
Sbjct: 420 EEQQHKDMEKGQDADIINAKNPTTVETGSQGSQVLDDSGEDTNIESQF 467

[Close]

BLAST of Spo17519.1 vs. NCBI nr
Match: gi|731365697|ref|XP_010694665.1| (PREDICTED: replication factor A protein 1-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 77.8 bits (190), Expect = 2.100e-11
Identity = 45/168 (26.79%), Postives = 89/168 (52.98%), Query Frame = 1

		  
Query: 2   YTSCNNCKSRVDENQYNNKCQDFPEFPINRYRIIATIDDGNATMTVAIFDKDVEKIIANP 61
           Y SC+ CK+++DE  Y  KC    ++P  RY +   IDDG+A + +A+FDK+ E++I + 
Sbjct: 259 YNSCDACKTKIDETSYCTKCDVVVKYPKIRYLLTVDIDDGSACVPLALFDKEAERVIGSL 318

Query: 62  IASMMKIYDQEKGVEKVSNELQQCVGKTCTLKLKVNNKSYIQELTAIKVFHVETEEKITT 121
           +  ++ +  +E G EKV+  LQ C+GK    ++K++ +S   EL   + F    + + + 
Sbjct: 319 VNKLLDLQKKENGNEKVTERLQICIGKNFAFRVKLSTRSETTELICQRTFETNYQLEKSF 378

Query: 122 KRHGKEKLKEIKKRRANQTKNTRTIGSTHQQRRSLQRAYHQLQTKTQY 170
           +    + +++ +       KN  T+ +  Q  + L  +      ++Q+
Sbjct: 379 EEQQHKDMEKGQDADIINAKNPTTVETGSQGSQVLDDSGEDTNIESQF 426

[Close]

BLAST of Spo17519.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QBQ8_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_197310 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 6.300e-10
Identity = 45/129 (34.88%), Postives = 76/129 (58.91%), Query Frame = 1

		  
Query: 34  IIATIDDGNATMTVAIFDKDVEKIIANPIASMMKIYDQEKGVEKVSNELQQCVGKTCTLK 93
           ++ T+ +G+A M + +FDK VEKI+  PI++M+KI  Q+ G EKV    + C+G +   K
Sbjct: 163 LVITVKEGDAYMRIGMFDKTVEKIVQMPISAMIKISTQQYGDEKVHERFENCIGNSFVFK 222

Query: 94  LKVNNKSYIQELTAIKVFHVETEEKITTKRHGKEKLKEIKKRRANQTKNTR----TIGST 153
           ++VN + + QELTAIKVF ++ EEK   +    +  + + +   N+   T     T  ST
Sbjct: 223 VQVNKRGFTQELTAIKVFTLD-EEKEDNQTQSTDLTQTLVQMATNKRSATEIEASTSIST 282

Query: 154 HQQRRSLQR 159
           HQ  + +++
Sbjct: 283 HQGLKKIKQ 290

The following BLAST results are available for this feature:

BLAST of Spo17519.1 vs. NCBI nr
BLAST of Spo17519.1 vs. UniProtKB/TrEMBL
BLAST of Spo17519.1 vs. ExPASy Swiss-Prot
BLAST of Spo17519.1 vs. TAIR (Arabidopsis)

BLAST of Spo17519.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
gi\|731344925\|ref\|XP_010683662.1\|	1.8e-13	28.3	PREDICTED: replication factor ...	[more]
gi\|731316030\|ref\|XP_010693938.1\|	1.8e-13	28.3	PREDICTED: replication factor ...	[more]
gi\|731316032\|ref\|XP_010693948.1\|	1.5e-12	27.3	PREDICTED: replication factor ...	[more]
gi\|731344929\|ref\|XP_010683664.1\|	1.5e-12	27.3	PREDICTED: replication factor ...	[more]
gi\|731365697\|ref\|XP_010694665.1\|	2.1e-11	26.7	PREDICTED: replication factor ...	[more]

BLAST of Spo17519.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0K9QBQ8_SPIOL	6.3e-10	34.8	Uncharacterized protein (Fragm...	[more]

BLAST of Spo17519.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo17519.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012340	Nucleic acid-binding, OB-fold	GENE3D	2.40.50.140		coord: 1..134 score: 7.1
IPR012340	Nucleic acid-binding, OB-fold	unknown	SSF50249	Nucleic acid-binding proteins	coord: 1..116 score: 9.59
IPR013955	Replication factor A, C-terminal	PFAM	PF08646	Rep_fac-A_C	coord: 1..106 score: 1.