Spo18314.1 (mRNA)

Overview
NameSpo18314.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_01269 : 125380 .. 129162 (+)
Sequence length1180
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGATCAATTGGAAAAAAAAAAAAAAACTAAACTCGGGTCTACCCACTTACCCACGAAATACTGCAGTTCCTTAAAAAATAAACTCCAATTCCCTCAATCCCAATTCCCATTTCCTTAAAAGATCAACTACAATTCCCTCATTCTCAATTCCCTAAATCCCAATTATACCAAATCCCAAATCTTAATCAATCTAAACATTTTTTAGCGAGCTCCCTTCAATTCGAAATTTGTCCAAGTTCCATTCAATCCAAAATTTGTTGAGGTCATTTGCGATTTGGTTTCTTCTCCGATAAACCTTTATCAACGGTTGTGATGAAATCTGTCTGGCGTACTTCTTCAAATTGTAAATCTGCTATGAATTATCAATTTTGATAAGTGAGTATGCATATCTTTTAAATTTTCAAGTTAATAGCTTTTTACAGGTTTATCAATTGCAATTTGCGAGGTTACATGTGTGAATTGTTGTTTTCTGGTTTCTTTCTATTGAATTTGATGTNTGCAATTTGCGAGGTTACATGTGTGAATTGTTGTTTTCTGGTTTCTTTCTATTGAATTTGATGTTTTCCCCCAATTTAGTGATTCTGACACTTAATTAAGTTGTAAATCTGCTTTGAATTATCAATTTTGATAAGTGAGTACGCATATCTTTTAAATTTTCAAGTTAATAGCTTTTTACAGGTTTATCAATTGCAATTTGCGAGGTTACATGTGTGAATTGTTGTTTTCTGGTTTCTTTCTATTGAATTTGATGTTTTCCCCCAATTTAGTGATTCTGACACTTAATTAAGTTGTAAATCTGCTTTGAATTATCAATTTTGATAAGTGAGTACGCATATCTTTTAAATTTTCAAGTTAATATCTTTTTACAGGTTTATCAATTGCAATTTGCGGGGTTACATGTGTGAATTGTTGTTTTCTGGTTTCTTTCTATTGAATTTGATGTTTTCCCCCAATTTAGTGATTCTGACACTTAATTAAGTTGTAAATCTGCTTTGAATTATCAATTTTGATAAGTGAGTACGCATATCTTTTAAATTTTCAAGTTAATATCTTTTTACAGGTTTATCAATTGCAATTTGCGGGGTTACATGTGTGAATTGTTGTTTTCTGGTTTCTTTCTATTGAATTTGATGTTTTCTCCCAATTTAGTGATTCTGACANCAGGTTTATCAATTGCAATTTGCGGGGTTACATGTGTGAATTGTTGTTTTCTGGTTTCTTTCTATTGAATTTGATGTTTTCTCCCAATTTAGTGATTCTGACAAGTTTTATTCGACAATTTTGGCTGAAGATATGACTCGATCTACTGAACTTTTATCGATCTTTCAGGTTTTAAATGGATGGATTCCAAGAGGAATTTGAAGAATCTCAAGGATAAACAAAATATNGATCTTTCAGGTTTTAAATGGATGGATTCCAAGAGGAATTTGAAGAATCTCAAGGATAAACAAAATATCCTCCTGCTTCCTTAATGCTGGTATAATTTGATTGTAATCTTGTTCAGTCGCGTTATTATTGATATTGAGAATTAGATTATGATTTTATATTCATCCTATGTTTGATTCAATATTTCATTGCTAGATAATATATTGCATTGCTGGGGATTTTGGGATGTATAATAACTAAACTTATAACCACTACTTGTTCCATGCACTTTTCTGGTGTTCTCCGCTTGAAGGTTTAGTGAAGTGTGAACTCGTATGTGCCACTTAGAGAGGTTGGGTGGTCTGGTGTTGGTGTAGCTTTAATATGCAACTACTTATTAACTAGTGTACCACCGTCCGATGCTTTGGAAGTTGCATCTAATGTTTAAAATTGAATCTTATGGTTGCTAATATATACTGACTATCCTGATGGTGTATCAACGTCTAACTTCTTCGAGTGATGTATGATTTTCACTAACAACTAGACTGCTAATCCAATAAATTTCAAAACCCCAACGTCTTTCCAATTCATCAAATGTTTTCCAAGTTCTAATTACCCAATACTTTTTCATCTTTATATGCAGAAACTTATTCGTATACTCGTTTCCGACATATAGTCCTTAAATTTTAGAGCTCTTTGCTTGTTGGTTGCTGCATATTCAGATGGGTATACAATCATTGCTAGTTCTTATAGAGCTTAAAAAATCCAGGACAAAAAGTGCATGTGTATATTGAGGTACTGAGGTAGTAACATATAAAGAATGTAGTCTAGACAGATCAAACTTGCTCCTCTTTGTTCATCAATACTCACAATTACCAGTAGTTCTTCTTTCTGATTACAAGTATTGTTCGTGTATACGTGCTCTATTATCTTCCCACCAAACTCTAGCATGCATCTCTCCAAATACTTGTTCTTTCTGATTAATTACAAGTATTAATTCGTGTAGATAACACGTACAAACACTGTAATGCAGATTATGGTAACTTAGGTAATAAAGAAAGAGGTACAGTTTAGCTATTCTGTTTACTATGGCGGGCGAGAAGTGTACGCTAAATCATCTACTACTCAGACTTCCACTCTATACCCTACAGTAAGTCCTGAATATATCCATTTTGTAATAACGACTGCTTTAGAATAATATTATGGGCCGATCTAGGATTTTAATAATAGATGAAGGATAAAGTTGTATACTCAAGTTCTATTATTCTATACTTATCTACTGTACTCTATATAATAATGTCATATTGTTATGTGTATTATTAGTTCCCTAGGAGTTACTTATAAAGAACTATCATATATATAGAATAACTAAAAGATTACCGGCTGATTTTTTTGTTTATTATGATAAAACCTGGTTTGCTTATTCGTATAGATGATCCAAGTGGTACTTCAAGGGGAAATTGGTGGTAATCCACAACCATCTCTATTATTGTACTTATTAAATCTAACATTACTGGTGTTGCTTTCAAACACTAACAGAGGAATTAGTATGAGGATTTTCGTCTTTTATCCACCGTGGTGTCAGTTCTTCCAGGTTGGATACTCGTTATCTCTTGCTTCCACTTGCTTTGGTTTTTATTGAGCTGAATGTAGGTTATGTTAACTGAATATTTTTGTTTGAACAGACAATGAAAGTTCATACCTGTAGCTGGATGATACATATGGGTTGGAAGTGGTGTCAAGGTAGGAAAGTTCAGGGCATATCGTGATCAGAATGCATTTTCTAAAAGTGAATTTCACCTGAGAAGATGACTAAGAAACAGAGATCTCAATGCACTCGTGGCTTTCACTATTCTCTAAGATGATGACCAGGTTTGCAGTTAGTAGATTATGTATGTGATAGTTCAACATTTGGGTAATCAGAAAGAAAATACCTCAATCCCATACTTGATCTCTCGACCAATTGTTTGCAGATAAAGAGATAAATGTAATAGGTTAATTTGTGTATTTTTTTAACTAATTATTAATTGACATTTTTTTTTATTTCATAGTGCTCTCGGCAAAATGGCATTGATTTTGGATTATATGGCACTGGCTTCATGAAAGGAGATTCTCAACCACAAGCATACCCATATTCATGAAGATGTGTAGTTCAAATAATGGTTTAATGATCAAGATCAGATTAATGAAACCAGGACTCATTGGATGTGTTTTGTTTTTCTTTTATGCTTATGTGTAGTCATTTTTTTTTCCAATTTGTGACAATGAATATTGTACATGGGTATGAGATGTTTATTTGATGTAATTGAGATATGAAATGACTTTTGTTATTTATACTGAATTGTTGTTAATGGATTTAGAATATTGTATATTGTAATATTATGATAATATATCTATTTTAATTTGCAATTGTTGGT

mRNA sequence

AAGATCAATTGGAAAAAAAAAAAAAAACTAAACTCGGGTCTACCCACTTACCCACGAAATACTGCAGTTCCTTAAAAAATAAACTCCAATTCCCTCAATCCCAATTCCCATTTCCTTAAAAGATCAACTACAATTCCCTCATTCTCAATTCCCTAAATCCCAATTATACCAAATCCCAAATCTTAATCAATCTAAACATTTTTTAGCGAGCTCCCTTCAATTCGAAATTTGTCCAAGTTCCATTCAATCCAAAATTTGTTGAGGTCATTTGCGATTTGGTTTCTTCTCCGATAAACCTTTATCAACGGTTGTGATGAAATCTGTCTGGCGTACTTCTTCAAATTGTAAATCTGCTATGAATTATCAATTTTGATAAGTTTTAAATGGATGGATTCCAAGAGGAATTTGAAGAATCTCAAGGATAAACAAAATATCCTCCTGCTTCCTTAATGCTGATTATGGTAACTTAGGTAATAAAGAAAGAGGTACAGTTTAGCTATTCTGTTTACTATGGCGGGCGAGAAGTGTACGCTAAATCATCTACTACTCAGACTTCCACTCTATACCCTACAAGGAATTAGTATGAGGATTTTCGTCTTTTATCCACCGTGGTGTCAGTTCTTCCAGACAATGAAAGTTCATACCTGTAGCTGGATGATACATATGGGTTGGAAGTGGTGTCAAGGTAGGAAAGTTCAGGGCATATCGTGATCAGAATGCATTTTCTAAAAGTGAATTTCACCTGAGAAGATGACTAAGAAACAGAGATCTCAATGCACTCGTGGCTTTCACTATTCTCTAAGATGATGACCAGTGCTCTCGGCAAAATGGCATTGATTTTGGATTATATGGCACTGGCTTCATGAAAGGAGATTCTCAACCACAAGCATACCCATATTCATGAAGATGTGTAGTTCAAATAATGGTTTAATGATCAAGATCAGATTAATGAAACCAGGACTCATTGGATGTGTTTTGTTTTTCTTTTATGCTTATGTGTAGTCATTTTTTTTTCCAATTTGTGACAATGAATATTGTACATGGGTATGAGATGTTTATTTGATGTAATTGAGATATGAAATGACTTTTGTTATTTATACTGAATTGTTGTTAATGGATTTAGAATATTGTATATTGTAATATTATGATAATATATCTATTTTAATTTGCAATTGTTGGT

Coding sequence (CDS)

ATGGCGGGCGAGAAGTGTACGCTAAATCATCTACTACTCAGACTTCCACTCTATACCCTACAAGGAATTAGTATGAGGATTTTCGTCTTTTATCCACCGTGGTGTCAGTTCTTCCAGACAATGAAAGTTCATACCTGTAGCTGGATGATACATATGGGTTGGAAGTGGTGTCAAGGTAGGAAAGTTCAGGGCATATCGTGA

Protein sequence

MAGEKCTLNHLLLRLPLYTLQGISMRIFVFYPPWCQFFQTMKVHTCSWMIHMGWKWCQGRKVQGIS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo18314Spo18314gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo18314.1Spo18314.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo18314.1.exon.1Spo18314.1.exon.1exon
Spo18314.1.exon.2Spo18314.1.exon.2exon
Spo18314.1.exon.3Spo18314.1.exon.3exon
Spo18314.1.exon.4Spo18314.1.exon.4exon
Spo18314.1.exon.5Spo18314.1.exon.5exon
Spo18314.1.exon.6Spo18314.1.exon.6exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo18314.1.utr5p.1Spo18314.1.utr5p.1five_prime_UTR
Spo18314.1.utr5p.2Spo18314.1.utr5p.2five_prime_UTR
Spo18314.1.utr5p.3Spo18314.1.utr5p.3five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo18314.1.CDS.1Spo18314.1.CDS.1CDS
Spo18314.1.CDS.2Spo18314.1.CDS.2CDS
Spo18314.1.CDS.3Spo18314.1.CDS.3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo18314.1.utr3p.1Spo18314.1.utr3p.1three_prime_UTR
Spo18314.1.utr3p.2Spo18314.1.utr3p.2three_prime_UTR


Homology
The following BLAST results are available for this feature:
BLAST of Spo18314.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo18314.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo18314.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo18314.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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