Spo27163.1 (mRNA)

Overview
NameSpo27163.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
Description50S ribosomal protein L1
Locationchr1 : 10787609 .. 10790950 (+)
Sequence length1521
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACTCTCTCCCTCTTCTTATCTGCTTATATTTCTGGATAGCCAAAGTTCAGTTTCCTTTGAACTTCATCACTCTCTCTCTCTTCGGTGAGCAACAATGGCTACCGCTGCACCTCCATCTTTAAGCCTCTGCTACGCTTCTTCCTCCTTCCAATACCAGCAAGACCCCTCTTTTCAAACCCATTTTAAACCCCTTCTCCTTAATTCTTCTCTATGCCGTTTAACTCTTAATCAAAGGGAACGCAGTTGTCTGAAATGGGTTGATTTCACTTCTCAGAAACAATCACCCAAGTCTGTTTCTTTCCGTGTTTTGGCGGCTGTTGCTGCGGAAGCTGAGGTTGCGGACATGGAGGAGGAGGAAGGAGAGAGCGGCGGTGTTGCTACTTTACCTTCGCCTACTAAGCCTAAAAAGGGGAAAGCTGCTTTGCCTTTGAAGAGTGACAGGGTATCATTTTTTCTCTTTTCTTCCATTTTTTTAGTTTAATTTTGGGAATTATTTGCTTACTGATTAATTCCGATTCTGGGTTTCATTTAAATTTTGTTTGTGTATTATCAGAAATATATGTTTATTCATTGATGAATTGAATTATGATCACTGTTTTTCTGGGTGAAAACTGATAAATAAGCCCAATTCAAAACCGGGGTATAAAACCTTGTCTAAATTTGTTACAATTCTGCTTCCTTTGGTTAATATAAGATGAATTTACTGATTAGCCATGTATTATTACTTATTGTTGTGGTATAGGAGAGATTGTTAGTTTTTAAAGGGATGTTTAGCATGTTTTCCTTGGACCTTTTTTAGGGTTGGACTTCTATTATTAGTGTACTGATGCTTGTTTAATAAATTGTCAGACGAGGTCGAAGAGGTTCTTAGAGATTCAAAAGCTCAGAGAAATCAAGCAAGAATATGACTTGAAGACGGCGTTATCATTGATGAAGCAAATGTCGTCTACAAAGTTCGTAGAGACTGCAGAGGCCCATTTTCGCTTGAATATTGATCCCAAGTACAATGATCAACAGCTGAGAGCAACTGTATGTCTCCTCAATAACTACCTTTGCCCCTTTCCTGAGAACTTGCTTGTTTCTTCTTCATTTGTTTTTGGATTGATGTACGTAGCTTGAAAGTTTGGATGCTAAGAGTTAATATTATACAGGTGAGTTTGCCCAAGGGAACTGGAAAAACTGTTAAAATAGCCGTGCTTGCCCAAGGTATGGGTTCTAATGATTTTTTGGGATTCAATTGCTTAGTTGCTTGCCAAATTTGGAGTGAATTCTATACCGATATTACTTGATAAGGTCCTTTTGTTCGGATTCAATTGCTTAGTTGCTTTTCAAATGTAGAGTGCATTCTATACCGATATTACTTGATAAGGTCCTTGTAAAGATATGTTATCAACATATATAGGCATCAAAGGAAGTGTAAATATATGTGGATCAATTATAGATGATGTAACTAGGACCTATGAGATAATGATTATGATGTCCAGTAAAGTTGCACAAACAGATGTGTGGTAGAGTGAAGACTCAGATCAGATGTTAGGAGTTGTATTCAACTTTAGGCAATGCTTGCAGATTTGGTATGATTTTTGTTGTACCCAAAAAAATAAAGATCACTCAAAAAGTGAGGATTACACATCTGGGAAAAGAGACTGTAAGCCTTAGATATCAATTATATGTCTTAGCAAATAATGTCAGCATGTGAAACATTTGGAGAATGTTACCACAGAATTGCTGTAAATGGCAGTAGTTTTTATATTTTCATAATGAAGCTCTGAAGTCGCAAAATTGTCCAACTTCCTGATTGCATTTTGTGTGAGAATAATTGTTACATATCATGAAAAGACAAGTAATTAGAACTTCTGAATCCTCCTAGTCCTTTGCTCTGGCCAAGGCAAGAGCCCTGTTTAAGGCATCAGTATCCCTTCCCTCCATTTCTCTCCATTTCCTCGTATCCAGACAAAGTGCGAGTCCCCTGACATCCTCATCTGGGAAGTAAGAAGATAGTCTTGAGTTGGAAGGAGCATTTATTGATTTCATTTCTTTGTGTTTCTACTTATTTTGTTCTTGAGGATTGTATCTCATCCCAGAAGTGTAAAATGGCAGGCGACAAAATTGACGAAGCAAAAGCAGCAGGAGCAGATATAGTTGGTGGAGAAGAATTAATAGAACAAATAAAGGGGGGATTCATGGACTTTGATAAGTTGATTGCAACATCTGACATGATGGCTAAGGTGGTGTTTCTCTTCTGTTACTTTTATATGTGAAACTGTAAAGTATTCTAGAATACGGCTGCTGAATCCATCATGTGCTGTTTGCATAAGTCCTTATTGAATCTGATATCATGAATAACTTGAGTAGTCAAAACAGACTTCAGAGCTGTTTGACAAATATAGACTATTTGCCTCCAATCCAGTGTTCCTAAACTAATCATCTTGGTATTTGCCACAGGTTGCAAGTCTAGGAAGGATTCTGGGGCCACGAGGGCTCATGCCAACTCCAAAAGCTGGAACGGTCACACCAAATGTAGCTCAGGTAAAACAAATGTGTCCTATTAAAAGGAAATAGGTGTTATATTTTGGACTTGTTAAGTGTGACTGAAAGCTAAAATGTTGTGCTCTATGATATTCCAGGCTGTGGAGGAATTCAAGAAAGGCAAGGTCGAGTTTAGAGTTGATAAAACAGGAATTGTTCACATTCCCTTTGGAAAGTTGAACTTCGAGGAGGAGGATCTTCTTATAAACTTGTTTGCCACAATTGTATGTTCTTTGGTCCTTAAATCTATAAATTATTTCATGCACCTTTCTTCAAATAATTTTTAACCTTTAACACTATGTTTCAGAAATCAGTGGAGACCAACAAGCCAACCGGTGCTAAGGGGGTTTACTGGAAAAGTGCCCATATCAGCTCATCAATGGGACCTTCTATTCGGTTAAACATTAGGGAGATGCTTGATTATAAGCCTCCTTCAAATGCTTAGACAGCCTTGTGTAATCTTTGTTTGTCATTTTTTGAGGCACTTCGATAATTTCAGAAGCAGCATTTCAAGAACGAAGACTTCATATGTAGCAGATTTCTTCAGTGACGTGGATGTTCTTCACTAGCAGGCTGACAAGTTATTGTAATTTCAAAGTTGATACTTGTACAATAGCTGTATCTTAGTTTTGGATAGTGAATTGGAAATAGTATGATTGTGGCTCGTGTATAGCTTCATTGTGCAAGAGTTTTGCCACTGAGATTGAGAATATACAAGTAATATTTCAAAAATAAGAATTGCAATTTAGATGTTATACATACATGAATAAACTTCAACGTCAGATAAAAGACCAACGTCTAAAAATTTTCAAG

mRNA sequence

ACTCTCTCCCTCTTCTTATCTGCTTATATTTCTGGATAGCCAAAGTTCAGTTTCCTTTGAACTTCATCACTCTCTCTCTCTTCGGTGAGCAACAATGGCTACCGCTGCACCTCCATCTTTAAGCCTCTGCTACGCTTCTTCCTCCTTCCAATACCAGCAAGACCCCTCTTTTCAAACCCATTTTAAACCCCTTCTCCTTAATTCTTCTCTATGCCGTTTAACTCTTAATCAAAGGGAACGCAGTTGTCTGAAATGGGTTGATTTCACTTCTCAGAAACAATCACCCAAGTCTGTTTCTTTCCGTGTTTTGGCGGCTGTTGCTGCGGAAGCTGAGGTTGCGGACATGGAGGAGGAGGAAGGAGAGAGCGGCGGTGTTGCTACTTTACCTTCGCCTACTAAGCCTAAAAAGGGGAAAGCTGCTTTGCCTTTGAAGAGTGACAGGACGAGGTCGAAGAGGTTCTTAGAGATTCAAAAGCTCAGAGAAATCAAGCAAGAATATGACTTGAAGACGGCGTTATCATTGATGAAGCAAATGTCGTCTACAAAGTTCGTAGAGACTGCAGAGGCCCATTTTCGCTTGAATATTGATCCCAAGTACAATGATCAACAGCTGAGAGCAACTGTGAGTTTGCCCAAGGGAACTGGAAAAACTGTTAAAATAGCCGTGCTTGCCCAAGGCGACAAAATTGACGAAGCAAAAGCAGCAGGAGCAGATATAGTTGGTGGAGAAGAATTAATAGAACAAATAAAGGGGGGATTCATGGACTTTGATAAGTTGATTGCAACATCTGACATGATGGCTAAGGTTGCAAGTCTAGGAAGGATTCTGGGGCCACGAGGGCTCATGCCAACTCCAAAAGCTGGAACGGTCACACCAAATGTAGCTCAGGCTGTGGAGGAATTCAAGAAAGGCAAGGTCGAGTTTAGAGTTGATAAAACAGGAATTGTTCACATTCCCTTTGGAAAGTTGAACTTCGAGGAGGAGGATCTTCTTATAAACTTGTTTGCCACAATTAAATCAGTGGAGACCAACAAGCCAACCGGTGCTAAGGGGGTTTACTGGAAAAGTGCCCATATCAGCTCATCAATGGGACCTTCTATTCGGTTAAACATTAGGGAGATGCTTGATTATAAGCCTCCTTCAAATGCTTAGACAGCCTTGTGTAATCTTTGTTTGTCATTTTTTGAGGCACTTCGATAATTTCAGAAGCAGCATTTCAAGAACGAAGACTTCATATGTAGCAGATTTCTTCAGTGACGTGGATGTTCTTCACTAGCAGGCTGACAAGTTATTGTAATTTCAAAGTTGATACTTGTACAATAGCTGTATCTTAGTTTTGGATAGTGAATTGGAAATAGTATGATTGTGGCTCGTGTATAGCTTCATTGTGCAAGAGTTTTGCCACTGAGATTGAGAATATACAAGTAATATTTCAAAAATAAGAATTGCAATTTAGATGTTATACATACATGAATAAACTTCAACGTCAGATAAAAGACCAACGTCTAAAAATTTTCAAG

Coding sequence (CDS)

ATGGCTACCGCTGCACCTCCATCTTTAAGCCTCTGCTACGCTTCTTCCTCCTTCCAATACCAGCAAGACCCCTCTTTTCAAACCCATTTTAAACCCCTTCTCCTTAATTCTTCTCTATGCCGTTTAACTCTTAATCAAAGGGAACGCAGTTGTCTGAAATGGGTTGATTTCACTTCTCAGAAACAATCACCCAAGTCTGTTTCTTTCCGTGTTTTGGCGGCTGTTGCTGCGGAAGCTGAGGTTGCGGACATGGAGGAGGAGGAAGGAGAGAGCGGCGGTGTTGCTACTTTACCTTCGCCTACTAAGCCTAAAAAGGGGAAAGCTGCTTTGCCTTTGAAGAGTGACAGGACGAGGTCGAAGAGGTTCTTAGAGATTCAAAAGCTCAGAGAAATCAAGCAAGAATATGACTTGAAGACGGCGTTATCATTGATGAAGCAAATGTCGTCTACAAAGTTCGTAGAGACTGCAGAGGCCCATTTTCGCTTGAATATTGATCCCAAGTACAATGATCAACAGCTGAGAGCAACTGTGAGTTTGCCCAAGGGAACTGGAAAAACTGTTAAAATAGCCGTGCTTGCCCAAGGCGACAAAATTGACGAAGCAAAAGCAGCAGGAGCAGATATAGTTGGTGGAGAAGAATTAATAGAACAAATAAAGGGGGGATTCATGGACTTTGATAAGTTGATTGCAACATCTGACATGATGGCTAAGGTTGCAAGTCTAGGAAGGATTCTGGGGCCACGAGGGCTCATGCCAACTCCAAAAGCTGGAACGGTCACACCAAATGTAGCTCAGGCTGTGGAGGAATTCAAGAAAGGCAAGGTCGAGTTTAGAGTTGATAAAACAGGAATTGTTCACATTCCCTTTGGAAAGTTGAACTTCGAGGAGGAGGATCTTCTTATAAACTTGTTTGCCACAATTAAATCAGTGGAGACCAACAAGCCAACCGGTGCTAAGGGGGTTTACTGGAAAAGTGCCCATATCAGCTCATCAATGGGACCTTCTATTCGGTTAAACATTAGGGAGATGCTTGATTATAAGCCTCCTTCAAATGCTTAG

Protein sequence

MATAAPPSLSLCYASSSFQYQQDPSFQTHFKPLLLNSSLCRLTLNQRERSCLKWVDFTSQKQSPKSVSFRVLAAVAAEAEVADMEEEEGESGGVATLPSPTKPKKGKAALPLKSDRTRSKRFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIKGGFMDFDKLIATSDMMAKVASLGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLNFEEEDLLINLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREMLDYKPPSNA
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo27163Spo27163gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo27163.1Spo27163.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo27163.1.exon.1Spo27163.1.exon.1exon
Spo27163.1.exon.2Spo27163.1.exon.2exon
Spo27163.1.exon.3Spo27163.1.exon.3exon
Spo27163.1.exon.4Spo27163.1.exon.4exon
Spo27163.1.exon.5Spo27163.1.exon.5exon
Spo27163.1.exon.6Spo27163.1.exon.6exon
Spo27163.1.exon.7Spo27163.1.exon.7exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo27163.1.utr5p.1Spo27163.1.utr5p.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo27163.1.CDS.1Spo27163.1.CDS.1CDS
Spo27163.1.CDS.2Spo27163.1.CDS.2CDS
Spo27163.1.CDS.3Spo27163.1.CDS.3CDS
Spo27163.1.CDS.4Spo27163.1.CDS.4CDS
Spo27163.1.CDS.5Spo27163.1.CDS.5CDS
Spo27163.1.CDS.6Spo27163.1.CDS.6CDS
Spo27163.1.CDS.7Spo27163.1.CDS.7CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo27163.1.utr3p.1Spo27163.1.utr3p.1three_prime_UTR


Homology
[Close]
BLAST of Spo27163.1 vs. NCBI nr
Match: gi|75311086|sp|Q9LE95.1|RK1_SPIOL (RecName: Full=50S ribosomal protein L1, chloroplastic; AltName: Full=CL1; Flags: Precursor)

HSP 1 Score: 678.3 bits (1749), Expect = 7.100e-192
Identity = 352/352 (100.00%), Postives = 352/352 (100.00%), Query Frame = 1 

		  

Query: 1   MATAAPPSLSLCYASSSFQYQQDPSFQTHFKPLLLNSSLCRLTLNQRERSCLKWVDFTSQ 60
           MATAAPPSLSLCYASSSFQYQQDPSFQTHFKPLLLNSSLCRLTLNQRERSCLKWVDFTSQ
Sbjct: 1   MATAAPPSLSLCYASSSFQYQQDPSFQTHFKPLLLNSSLCRLTLNQRERSCLKWVDFTSQ 60

Query: 61  KQSPKSVSFRVLAAVAAEAEVADMEEEEGESGGVATLPSPTKPKKGKAALPLKSDRTRSK 120
           KQSPKSVSFRVLAAVAAEAEVADMEEEEGESGGVATLPSPTKPKKGKAALPLKSDRTRSK
Sbjct: 61  KQSPKSVSFRVLAAVAAEAEVADMEEEEGESGGVATLPSPTKPKKGKAALPLKSDRTRSK 120

Query: 121 RFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQLRATVSLP 180
           RFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQLRATVSLP
Sbjct: 121 RFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQLRATVSLP 180

Query: 181 KGTGKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIKGGFMDFDKLIATSDMMAKVAS 240
           KGTGKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIKGGFMDFDKLIATSDMMAKVAS
Sbjct: 181 KGTGKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIKGGFMDFDKLIATSDMMAKVAS 240

Query: 241 LGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLNFEEEDLL 300
           LGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLNFEEEDLL
Sbjct: 241 LGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLNFEEEDLL 300

Query: 301 INLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREMLDYKPPSNA 353
           INLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREMLDYKPPSNA
Sbjct: 301 INLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREMLDYKPPSNA 352
[Close]
BLAST of Spo27163.1 vs. NCBI nr
Match: gi|902155062|gb|KNA05869.1| (hypothetical protein SOVF_186350 [Spinacia oleracea])

HSP 1 Score: 676.8 bits (1745), Expect = 2.100e-191
Identity = 351/352 (99.72%), Postives = 352/352 (100.00%), Query Frame = 1 

		  

Query: 1   MATAAPPSLSLCYASSSFQYQQDPSFQTHFKPLLLNSSLCRLTLNQRERSCLKWVDFTSQ 60
           MATAAPPSLSLCYASSSFQYQQDPSFQTHFKPLLLNSSLCRLTLNQRERSCLKWVDFTSQ
Sbjct: 1   MATAAPPSLSLCYASSSFQYQQDPSFQTHFKPLLLNSSLCRLTLNQRERSCLKWVDFTSQ 60

Query: 61  KQSPKSVSFRVLAAVAAEAEVADMEEEEGESGGVATLPSPTKPKKGKAALPLKSDRTRSK 120
           KQSPKSVSFRVLAAVAAEAEVADMEEEEGESGGVATLPSPTKPKKGKAALPLKSDRTRSK
Sbjct: 61  KQSPKSVSFRVLAAVAAEAEVADMEEEEGESGGVATLPSPTKPKKGKAALPLKSDRTRSK 120

Query: 121 RFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQLRATVSLP 180
           RFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQLRATVSLP
Sbjct: 121 RFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQLRATVSLP 180

Query: 181 KGTGKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIKGGFMDFDKLIATSDMMAKVAS 240
           KGTGKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIKGGFMDFDKLIATSDMMAKVAS
Sbjct: 181 KGTGKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIKGGFMDFDKLIATSDMMAKVAS 240

Query: 241 LGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLNFEEEDLL 300
           LGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLNF+EEDLL
Sbjct: 241 LGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLNFKEEDLL 300

Query: 301 INLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREMLDYKPPSNA 353
           INLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREMLDYKPPSNA
Sbjct: 301 INLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREMLDYKPPSNA 352
[Close]
BLAST of Spo27163.1 vs. NCBI nr
Match: gi|731316270|ref|XP_010694860.1| (PREDICTED: 50S ribosomal protein L1, chloroplastic [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 570.9 bits (1470), Expect = 1.600e-159
Identity = 309/359 (86.07%), Postives = 321/359 (89.42%), Query Frame = 1 

		  

Query: 1   MATAAPPSLSLCYASSS-FQYQQD----PSFQTHFKPLLLNSSLCRLTLNQRERSCLKWV 60
           MA+ APPSL+L YASSS F YQQD    PSFQTH KP  LNSSL  LTLNQRER CLKWV
Sbjct: 1   MASIAPPSLTLSYASSSSFNYQQDLTFYPSFQTH-KPFFLNSSLYPLTLNQRERKCLKWV 60

Query: 61  DFTSQKQSPKSVSFRVLAAVAAEAEVADMEEEEGESGG--VATLPSPTKPKKGKAALPLK 120
           D  SQKQ        V+AAVAAEAEVA+ EEEE ESGG  V TLP  TKPK GKAALPLK
Sbjct: 61  DVNSQKQPKFGSLHVVVAAVAAEAEVAETEEEERESGGGGVVTLPKSTKPKTGKAALPLK 120

Query: 121 SDRTRSKRFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQL 180
            DRTRSKRFLEIQ+LREIKQEYDLKTA+SLMKQMS+TKFVETAEAHFRLNIDPKYNDQQL
Sbjct: 121 RDRTRSKRFLEIQRLREIKQEYDLKTAISLMKQMSTTKFVETAEAHFRLNIDPKYNDQQL 180

Query: 181 RATVSLPKGTGKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIKGGFMDFDKLIATSD 240
           RATVSLPKGTG  VKIAVLAQGDKIDEAKAAGADIVGGE+LIEQIKGGFMDFDKLIATSD
Sbjct: 181 RATVSLPKGTGTIVKIAVLAQGDKIDEAKAAGADIVGGEDLIEQIKGGFMDFDKLIATSD 240

Query: 241 MMAKVASLGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLN 300
           MMAKVASLGRILGPRGLMPTPKAGTVTPN+AQAVEEFKKGKVEFRVDKTGIVHIPFGKLN
Sbjct: 241 MMAKVASLGRILGPRGLMPTPKAGTVTPNIAQAVEEFKKGKVEFRVDKTGIVHIPFGKLN 300

Query: 301 FEEEDLLINLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREMLDYKPPSNA 353
           FEE+DLLINL AT+KSVE NKPTGAKGVYWKSAHISSSMGPSI+LNIREMLDYK PSNA
Sbjct: 301 FEEDDLLINLLATVKSVEANKPTGAKGVYWKSAHISSSMGPSIKLNIREMLDYKLPSNA 358
[Close]
BLAST of Spo27163.1 vs. NCBI nr
Match: gi|720044107|ref|XP_010269778.1| (PREDICTED: 50S ribosomal protein L1, chloroplastic-like [Nelumbo nucifera])

HSP 1 Score: 459.1 bits (1180), Expect = 6.700e-126
Identity = 243/352 (69.03%), Postives = 282/352 (80.11%), Query Frame = 1 

		  

Query: 5   APPSLSLCYASSSFQYQQDPSFQTHFKPLLLNS-----SLCRLTLNQRERSCLKWVDFTS 64
           A  S+ L +++++    + PS    FKP  ++S     S+  L L+ R R    WV  TS
Sbjct: 2   ASSSVMLTHSATTILPSEAPSLC--FKPNPISSCSSCFSVFPLVLHSRGRKSCNWVQVTS 61

Query: 65  QKQSPKSVSFRVLAAVAAEAEVADMEEEEGESGGVATLPSPTKPKKGKAALPLKSDRTRS 124
            +++    S  V AA+AAEAEVA+   +E   G  A   SPTKPKKGKAALPLK DRTRS
Sbjct: 62  WREAKFESSIFVAAALAAEAEVAEDVTQEAVEGSAAAAASPTKPKKGKAALPLKRDRTRS 121

Query: 125 KRFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQLRATVSL 184
           KRFLEIQKLRE K+EYDL TA+SL+KQM+STKFVET E HFRLNIDPKYNDQQLRATV+L
Sbjct: 122 KRFLEIQKLRENKKEYDLPTAISLLKQMASTKFVETVEVHFRLNIDPKYNDQQLRATVNL 181

Query: 185 PKGTGKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIKGGFMDFDKLIATSDMMAKVA 244
           PKGTG+TV++AVL QG+K+DEAK AGAD+VGGE+LIEQIKGGFMDFDKLIA+ DMM KVA
Sbjct: 182 PKGTGQTVRVAVLTQGEKVDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMMPKVA 241

Query: 245 SLGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLNFEEEDL 304
           SLG+ILGPRGLMP PKAGTV  ++ QA+ EFKKGKVE+R DKTGIVHIPFGK NF EEDL
Sbjct: 242 SLGKILGPRGLMPNPKAGTVATDIPQAISEFKKGKVEYRADKTGIVHIPFGKANFSEEDL 301

Query: 305 LINLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREMLDYKPPSN 352
           L+NL A ++SVETNKP+GAKGVYWKSAHI SSMGPSIRLNIREMLDYKPPSN
Sbjct: 302 LVNLMAAVRSVETNKPSGAKGVYWKSAHICSSMGPSIRLNIREMLDYKPPSN 351
[Close]
BLAST of Spo27163.1 vs. NCBI nr
Match: gi|720095626|ref|XP_010246738.1| (PREDICTED: 50S ribosomal protein L1, chloroplastic-like [Nelumbo nucifera])

HSP 1 Score: 458.8 bits (1179), Expect = 8.800e-126
Identity = 246/355 (69.30%), Postives = 284/355 (80.00%), Query Frame = 1 

		  

Query: 1   MATAAPPSLSLCYASSSFQYQQDPSFQTHFKPLLLNS---SLCRLTLNQRERSCLKWVDF 60
           MA+AA  SL L YAS +    + PS      P+  +S   S+  L L  R R    WV  
Sbjct: 1   MASAAS-SLMLTYASPTVFPSETPSLCFKSSPVSPSSRSFSVYPLVLQSRGRKSFNWVQV 60

Query: 61  TSQKQSPKSVSFRVLAAVAAEAEVADMEEEEGESGGVATL-PSPTKPKKGKAALPLKSDR 120
           +S+K+S    S  V AAVAAEAEVA+  E+EG  G    + P+P+KPKKGKAALPLK DR
Sbjct: 61  SSRKESKFDSSLVVAAAVAAEAEVAEDVEQEGTEGSATAIAPAPSKPKKGKAALPLKRDR 120

Query: 121 TRSKRFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQLRAT 180
           TRSKRFLEIQKLRE K+EYDL TA+SLMKQ + +KFVETAEAHFRLNIDPKYNDQQLRAT
Sbjct: 121 TRSKRFLEIQKLRENKKEYDLPTAISLMKQTAKSKFVETAEAHFRLNIDPKYNDQQLRAT 180

Query: 181 VSLPKGTGKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIKGGFMDFDKLIATSDMMA 240
           V+LPKGTG+T+++AVL QG+K+DEAK AGAD+VGGE+LIEQIKGGFM+FDKLIA+ DMM 
Sbjct: 181 VNLPKGTGQTIRVAVLTQGEKVDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMMP 240

Query: 241 KVASLGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLNFEE 300
           KVASLG+ILGPRGLMP PKAGTV  ++ QA+ EFKKGKVE+R DKTGIVHIPFGK NF E
Sbjct: 241 KVASLGKILGPRGLMPNPKAGTVATDIPQAIGEFKKGKVEYRADKTGIVHIPFGKANFSE 300

Query: 301 EDLLINLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREMLDYKPPSN 352
           EDLL+NL A +KS+E NKP+GAKGVYWKSAHI SSMGPSIRLNIREMLDYK PSN
Sbjct: 301 EDLLVNLIAAVKSIEANKPSGAKGVYWKSAHICSSMGPSIRLNIREMLDYKLPSN 354
[Close]
BLAST of Spo27163.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QF10_SPIOL (Ribosomal protein OS=Spinacia oleracea GN=SOVF_186350 PE=3 SV=1)

HSP 1 Score: 676.8 bits (1745), Expect = 1.400e-191
Identity = 351/352 (99.72%), Postives = 352/352 (100.00%), Query Frame = 1 

		  

Query: 1   MATAAPPSLSLCYASSSFQYQQDPSFQTHFKPLLLNSSLCRLTLNQRERSCLKWVDFTSQ 60
           MATAAPPSLSLCYASSSFQYQQDPSFQTHFKPLLLNSSLCRLTLNQRERSCLKWVDFTSQ
Sbjct: 1   MATAAPPSLSLCYASSSFQYQQDPSFQTHFKPLLLNSSLCRLTLNQRERSCLKWVDFTSQ 60

Query: 61  KQSPKSVSFRVLAAVAAEAEVADMEEEEGESGGVATLPSPTKPKKGKAALPLKSDRTRSK 120
           KQSPKSVSFRVLAAVAAEAEVADMEEEEGESGGVATLPSPTKPKKGKAALPLKSDRTRSK
Sbjct: 61  KQSPKSVSFRVLAAVAAEAEVADMEEEEGESGGVATLPSPTKPKKGKAALPLKSDRTRSK 120

Query: 121 RFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQLRATVSLP 180
           RFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQLRATVSLP
Sbjct: 121 RFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQLRATVSLP 180

Query: 181 KGTGKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIKGGFMDFDKLIATSDMMAKVAS 240
           KGTGKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIKGGFMDFDKLIATSDMMAKVAS
Sbjct: 181 KGTGKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIKGGFMDFDKLIATSDMMAKVAS 240

Query: 241 LGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLNFEEEDLL 300
           LGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLNF+EEDLL
Sbjct: 241 LGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLNFKEEDLL 300

Query: 301 INLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREMLDYKPPSNA 353
           INLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREMLDYKPPSNA
Sbjct: 301 INLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREMLDYKPPSNA 352
[Close]
BLAST of Spo27163.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CYE7_BETVU (Ribosomal protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g028990 PE=3 SV=1)

HSP 1 Score: 570.9 bits (1470), Expect = 1.100e-159
Identity = 309/359 (86.07%), Postives = 321/359 (89.42%), Query Frame = 1 

		  

Query: 1   MATAAPPSLSLCYASSS-FQYQQD----PSFQTHFKPLLLNSSLCRLTLNQRERSCLKWV 60
           MA+ APPSL+L YASSS F YQQD    PSFQTH KP  LNSSL  LTLNQRER CLKWV
Sbjct: 1   MASIAPPSLTLSYASSSSFNYQQDLTFYPSFQTH-KPFFLNSSLYPLTLNQRERKCLKWV 60

Query: 61  DFTSQKQSPKSVSFRVLAAVAAEAEVADMEEEEGESGG--VATLPSPTKPKKGKAALPLK 120
           D  SQKQ        V+AAVAAEAEVA+ EEEE ESGG  V TLP  TKPK GKAALPLK
Sbjct: 61  DVNSQKQPKFGSLHVVVAAVAAEAEVAETEEEERESGGGGVVTLPKSTKPKTGKAALPLK 120

Query: 121 SDRTRSKRFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQL 180
            DRTRSKRFLEIQ+LREIKQEYDLKTA+SLMKQMS+TKFVETAEAHFRLNIDPKYNDQQL
Sbjct: 121 RDRTRSKRFLEIQRLREIKQEYDLKTAISLMKQMSTTKFVETAEAHFRLNIDPKYNDQQL 180

Query: 181 RATVSLPKGTGKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIKGGFMDFDKLIATSD 240
           RATVSLPKGTG  VKIAVLAQGDKIDEAKAAGADIVGGE+LIEQIKGGFMDFDKLIATSD
Sbjct: 181 RATVSLPKGTGTIVKIAVLAQGDKIDEAKAAGADIVGGEDLIEQIKGGFMDFDKLIATSD 240

Query: 241 MMAKVASLGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLN 300
           MMAKVASLGRILGPRGLMPTPKAGTVTPN+AQAVEEFKKGKVEFRVDKTGIVHIPFGKLN
Sbjct: 241 MMAKVASLGRILGPRGLMPTPKAGTVTPNIAQAVEEFKKGKVEFRVDKTGIVHIPFGKLN 300

Query: 301 FEEEDLLINLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREMLDYKPPSNA 353
           FEE+DLLINL AT+KSVE NKPTGAKGVYWKSAHISSSMGPSI+LNIREMLDYK PSNA
Sbjct: 301 FEEDDLLINLLATVKSVEANKPTGAKGVYWKSAHISSSMGPSIKLNIREMLDYKLPSNA 358
[Close]
BLAST of Spo27163.1 vs. UniProtKB/TrEMBL
Match: A0A0D2QZ58_GOSRA (Ribosomal protein OS=Gossypium raimondii GN=B456_004G170500 PE=3 SV=1)

HSP 1 Score: 453.0 bits (1164), Expect = 3.400e-124
Identity = 247/366 (67.49%), Postives = 285/366 (77.87%), Query Frame = 1 

		  

Query: 3   TAAPPSLSLCYASSSFQYQQ------------DPSFQTHFKPLLLNSSLCRLTLNQRERS 62
           T    SL + YA++S  + Q             P+F  +  PL L +S+ R       +S
Sbjct: 6   TTPSSSLMITYAAASTVHAQALTPSVLSFKSNKPTFSIN--PLALKTSIDR-------KS 65

Query: 63  CLKWVDFTSQKQSPKSVSFRVLAAVAAEAEVADMEEEE---GESGGVATL--PSPTKPKK 122
            +KW +   Q+ S       V+AAVAAEAEVA+  +E       GG AT    +P KPKK
Sbjct: 66  GIKWANLCPQRDS----KHHVVAAVAAEAEVAEATDENDGVAAEGGTATAIATAPPKPKK 125

Query: 123 GKAALPLKSDRTRSKRFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNID 182
           GKAALPLK DRTRSKRFLEIQKLRE K+EYDLKTA+SL+K+MSSTKFVETAEAHFRLNID
Sbjct: 126 GKAALPLKRDRTRSKRFLEIQKLRETKKEYDLKTAISLLKEMSSTKFVETAEAHFRLNID 185

Query: 183 PKYNDQQLRATVSLPKGTGKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIKGGFMDF 242
           PKYNDQQLRATV+LPKGTG+ VK+AVL QG+K DEAK AGADIVGGE+LIEQIKGGFMDF
Sbjct: 186 PKYNDQQLRATVNLPKGTGQKVKVAVLTQGEKFDEAKNAGADIVGGEDLIEQIKGGFMDF 245

Query: 243 DKLIATSDMMAKVASLGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIV 302
           DKLIA+ DMM KVA LG+ILGPRGLMP PKAGTVTPN+ QA+EEFKKGKVE+R DKTGIV
Sbjct: 246 DKLIASPDMMVKVAGLGKILGPRGLMPNPKAGTVTPNIPQAIEEFKKGKVEYRADKTGIV 305

Query: 303 HIPFGKLNFEEEDLLINLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREMLD 352
           HIPFGK++F E+DLL+NL A +KS+ETNKP GAKGVYWKSAHI +SMGPSI+LNIREMLD
Sbjct: 306 HIPFGKVDFLEDDLLVNLLAAVKSIETNKPKGAKGVYWKSAHICTSMGPSIKLNIREMLD 358
[Close]
BLAST of Spo27163.1 vs. UniProtKB/TrEMBL
Match: K4AYG3_SOLLC (Ribosomal protein OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 453.0 bits (1164), Expect = 3.400e-124
Identity = 248/354 (70.06%), Postives = 281/354 (79.38%), Query Frame = 1 

		  

Query: 2   ATAAPPSLSLCYASSSFQYQQDP-SFQTHFKPLLLNS----SLCRLTLNQRERSCLKWVD 61
           +TA P +L+L   SS F  + +P S     KPLL  S    SL  L+L  +ER       
Sbjct: 3   STATPSTLTL---SSIFSQELNPNSLIFKSKPLLFTSHKSFSLHPLSLQYKER------- 62

Query: 62  FTSQKQSPKSVSFRVLAAVAAEAEVADMEEEEGESGGVATLPSPTKPKKGKAALPLKSDR 121
               K  P      V+AA+AAEAEV D  E+EGE G VA L  P+KPKKGKAALPLK DR
Sbjct: 63  ----KNGPL-----VVAAMAAEAEVEDAVEQEGEEGAVAVLIPPSKPKKGKAALPLKRDR 122

Query: 122 TRSKRFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQLRAT 181
           TRSKRFLEIQKLREIK+EYDLKTA+ L+KQ +S KFVETAEAHFRLNIDPKYNDQQLRAT
Sbjct: 123 TRSKRFLEIQKLREIKKEYDLKTAIELLKQTASLKFVETAEAHFRLNIDPKYNDQQLRAT 182

Query: 182 VSLPKGTGKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIKGGFMDFDKLIATSDMMA 241
           V+LPKGTG+TVK+AVL QG+K DEAK AGADIVGGE+LIEQIKGGFM+FDKLIAT DMM 
Sbjct: 183 VNLPKGTGQTVKVAVLTQGEKFDEAKNAGADIVGGEDLIEQIKGGFMEFDKLIATPDMMP 242

Query: 242 KVASLGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLNFEE 301
           KVASLGR+LGPRGLMP PKAGTVT N+ QA+EEFKKGKVE+R DKTGIVH+PFGK NF E
Sbjct: 243 KVASLGRVLGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHLPFGKANFSE 302

Query: 302 EDLLINLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREMLDYKPPS 351
           EDL+IN  A +KSVE NKP+GAKGVYWKSAH+ SSMGPSIRLN+REML+YK P+
Sbjct: 303 EDLIINFIAAVKSVEANKPSGAKGVYWKSAHVCSSMGPSIRLNVREMLEYKLPN 337
[Close]
BLAST of Spo27163.1 vs. UniProtKB/TrEMBL
Match: A0A061DV91_THECC (Ribosomal protein OS=Theobroma cacao GN=TCM_005841 PE=3 SV=1)

HSP 1 Score: 451.8 bits (1161), Expect = 7.500e-124
Identity = 250/359 (69.64%), Postives = 287/359 (79.94%), Query Frame = 1 

		  

Query: 1   MATAAPPS--LSLCYASSSFQYQQDPSFQTHFKPLLLNSSLCRLTL--NQRERSCLKWVD 60
           M T   PS  L L YA+S+   Q        FK      SL  L L  ++  +S LKW +
Sbjct: 1   MTTCTTPSSSLMLAYAASTVHGQDLTPSLLSFKSNKPTFSLYPLVLKTSKDRKSSLKWAN 60

Query: 61  FTSQKQSPKSVSFRVLAAVAAEAEVADMEE-EEGESGGV---ATLPSPTKPKKGKAALPL 120
              Q+ S K V   V+AAVAAEAEVA+  E +EG + G    AT P+P KPK+GKAALPL
Sbjct: 61  LCPQRDS-KHV---VVAAVAAEAEVAEAAEGKEGVAEGATATATAPAPPKPKRGKAALPL 120

Query: 121 KSDRTRSKRFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQ 180
           K DRTRSKRFLEIQKLRE K+EYDLKTA+SL+K+M+S KFVE+AEAHFRLNIDPKYNDQQ
Sbjct: 121 KRDRTRSKRFLEIQKLRENKKEYDLKTAISLLKEMTSAKFVESAEAHFRLNIDPKYNDQQ 180

Query: 181 LRATVSLPKGTGKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIKGGFMDFDKLIATS 240
           LRATV+LPKGTG+TVK+AVL QG+K DEAK AGADIVGGE+LIEQIK GFM+FDKLIA+ 
Sbjct: 181 LRATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADIVGGEDLIEQIKKGFMEFDKLIASP 240

Query: 241 DMMAKVASLGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGKL 300
           DMM KVASLG+ILGPRGLMP PKAGTVTPN+ QA+EEFKKGKVE+R DKTGIVHIPFGK+
Sbjct: 241 DMMVKVASLGKILGPRGLMPNPKAGTVTPNLPQAIEEFKKGKVEYRADKTGIVHIPFGKV 300

Query: 301 NFEEEDLLINLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREMLDYKPPSN 352
           +F EEDLL+N  A +KS+ETNKP GAKGVYWKSAHI +SMGPSIRL+IREMLDYKPPSN
Sbjct: 301 DFSEEDLLLNFLAAVKSIETNKPKGAKGVYWKSAHICTSMGPSIRLSIREMLDYKPPSN 355
[Close]
BLAST of Spo27163.1 vs. ExPASy Swiss-Prot
Match: RK1_SPIOL (50S ribosomal protein L1, chloroplastic OS=Spinacia oleracea GN=RPL1 PE=1 SV=1)

HSP 1 Score: 678.3 bits (1749), Expect = 4.400e-194
Identity = 352/352 (100.00%), Postives = 352/352 (100.00%), Query Frame = 1 

		  

Query: 1   MATAAPPSLSLCYASSSFQYQQDPSFQTHFKPLLLNSSLCRLTLNQRERSCLKWVDFTSQ 60
           MATAAPPSLSLCYASSSFQYQQDPSFQTHFKPLLLNSSLCRLTLNQRERSCLKWVDFTSQ
Sbjct: 1   MATAAPPSLSLCYASSSFQYQQDPSFQTHFKPLLLNSSLCRLTLNQRERSCLKWVDFTSQ 60

Query: 61  KQSPKSVSFRVLAAVAAEAEVADMEEEEGESGGVATLPSPTKPKKGKAALPLKSDRTRSK 120
           KQSPKSVSFRVLAAVAAEAEVADMEEEEGESGGVATLPSPTKPKKGKAALPLKSDRTRSK
Sbjct: 61  KQSPKSVSFRVLAAVAAEAEVADMEEEEGESGGVATLPSPTKPKKGKAALPLKSDRTRSK 120

Query: 121 RFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQLRATVSLP 180
           RFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQLRATVSLP
Sbjct: 121 RFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQLRATVSLP 180

Query: 181 KGTGKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIKGGFMDFDKLIATSDMMAKVAS 240
           KGTGKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIKGGFMDFDKLIATSDMMAKVAS
Sbjct: 181 KGTGKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIKGGFMDFDKLIATSDMMAKVAS 240

Query: 241 LGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLNFEEEDLL 300
           LGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLNFEEEDLL
Sbjct: 241 LGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLNFEEEDLL 300

Query: 301 INLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREMLDYKPPSNA 353
           INLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREMLDYKPPSNA
Sbjct: 301 INLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREMLDYKPPSNA 352
[Close]
BLAST of Spo27163.1 vs. ExPASy Swiss-Prot
Match: RK1_ARATH (50S ribosomal protein L1, chloroplastic OS=Arabidopsis thaliana GN=RPL1 PE=1 SV=1)

HSP 1 Score: 418.3 bits (1074), Expect = 8.300e-116
Identity = 231/354 (65.25%), Postives = 272/354 (76.84%), Query Frame = 1 

		  

Query: 2   ATAAPPSLSLCYASSSFQYQQDPSFQTHF-----KPLLLNSSLCRLTLNQRERSCLKWVD 61
           A A   SL L YA++S + Q      + F     +P  L+  L  L    R+R C   +D
Sbjct: 3   ACATHSSLMLAYAAASTRSQDLTPTPSLFSFASSRPNHLSFPLLLLG-GSRDRRCAA-ID 62

Query: 62  FTSQKQSPKSVSFRVLAAVAAEAEVADMEEEEGESGGVATLPSPTKPKKGKAALPLKSDR 121
             S  +        +++AVAAEA   D++ EE        +  P KPKKGKAAL LK DR
Sbjct: 63  RASNHKF-------IVSAVAAEA---DLDTEEDLEQTATAVLDPPKPKKGKAALVLKRDR 122

Query: 122 TRSKRFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQLRAT 181
           TRSKRFLEIQKLRE K+EYD+ TA+SL+KQ ++T+FVE+ EAHFRLNIDPKYNDQQLRAT
Sbjct: 123 TRSKRFLEIQKLRETKKEYDVNTAISLLKQTANTRFVESVEAHFRLNIDPKYNDQQLRAT 182

Query: 182 VSLPKGTGKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIKGGFMDFDKLIATSDMMA 241
           VSLPKGTG+TV +AVLAQG+K+DEAK+AGADIVG ++LIEQIKGGFM+FDKLIA+ DMM 
Sbjct: 183 VSLPKGTGQTVIVAVLAQGEKVDEAKSAGADIVGSDDLIEQIKGGFMEFDKLIASPDMMV 242

Query: 242 KVASLGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLNFEE 301
           KVA LG+ILGPRGLMP PKAGTVT N+ QA+EEFKKGKVEFR DKTGIVHIPFGK+NF E
Sbjct: 243 KVAGLGKILGPRGLMPNPKAGTVTANIPQAIEEFKKGKVEFRADKTGIVHIPFGKVNFTE 302

Query: 302 EDLLINLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREMLDYKPPS 351
           EDLLIN  A +KSVETNKP GAKGVYWKSAHI SSMGPSI+LNIREM+D+KPP+
Sbjct: 303 EDLLINFLAAVKSVETNKPKGAKGVYWKSAHICSSMGPSIKLNIREMIDFKPPT 344
[Close]
BLAST of Spo27163.1 vs. ExPASy Swiss-Prot
Match: RK1_GRATL (50S ribosomal protein L1, chloroplastic OS=Gracilaria tenuistipitata var. liui GN=rpl1 PE=3 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 2.500e-72
Identity = 133/226 (58.85%), Postives = 176/226 (77.88%), Query Frame = 1 

		  

Query: 116 RTRSKRFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQLRA 175
           + RS+RF  + K  E  + Y    AL+LMK +S+ KF+ETAE H  L +DPKY DQQLR 
Sbjct: 2   KKRSRRFSTLLKQIEADKLYSPLDALNLMKNLSNVKFIETAEVHIVLGLDPKYADQQLRT 61

Query: 176 TVSLPKGTGKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIKGGFMDFDKLIATSDMM 235
           TV LPKGTGK +++AV+ Q +K  EAK++GADIVGGE+LI++IK G +DFDKLIAT DMM
Sbjct: 62  TVMLPKGTGKIMRVAVITQNNKTHEAKSSGADIVGGEDLIDEIKKGRLDFDKLIATPDMM 121

Query: 236 AKVASLGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLNFE 295
             +A LG+ILGP+GLMP+PKAGTVT N+   ++EFK GK+E+++D++GI+HIPFGKLNF 
Sbjct: 122 MSIAKLGKILGPKGLMPSPKAGTVTHNLITTIKEFKAGKLEYKIDRSGILHIPFGKLNFN 181

Query: 296 EEDLLINLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIR 342
            EDL INL    +S++ N+P G+KG YWKS HI+S+MGPSI L+I+
Sbjct: 182 VEDLHINLITLQESIDRNRPQGSKGKYWKSVHINSTMGPSIPLDIQ 227
[Close]
BLAST of Spo27163.1 vs. ExPASy Swiss-Prot
Match: RL1_CYAP7 (50S ribosomal protein L1 OS=Cyanothece sp. (strain PCC 7424) GN=rplA PE=3 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 7.300e-72
Identity = 131/229 (57.21%), Postives = 178/229 (77.73%), Query Frame = 1 

		  

Query: 119 SKRFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQLRATVS 178
           S+RF E     +  + Y+   AL+L+K+ ++ KF ETAE H RL IDPKY DQQLR TV+
Sbjct: 6   SRRFKEALAKVDQDKAYEPLEALNLLKETATAKFDETAEVHVRLGIDPKYTDQQLRTTVT 65

Query: 179 LPKGTGKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIKGGFMDFDKLIATSDMMAKV 238
            PKGTG+TV++AV+A+G+K+ EA +AGADIVG EELI++I+ G MDF+ LIAT DMM KV
Sbjct: 66  FPKGTGQTVRVAVIARGEKVQEASSAGADIVGSEELIDEIQNGMMDFEVLIATPDMMPKV 125

Query: 239 ASLGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLNFEEED 298
           A LGR+LGPRGLMP+PK GTVT ++A A++EFK GK EFR D+TGIVH+ FGK +F  ED
Sbjct: 126 AKLGRLLGPRGLMPSPKGGTVTTDLAAAIQEFKAGKQEFRADRTGIVHVMFGKASFTAED 185

Query: 299 LLINLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREMLDYK 348
           LL+NL A  ++++ N+P+GAKG YW++  +S+SMGPSI++++  + D K
Sbjct: 186 LLVNLKALQETIDRNRPSGAKGRYWRTVFVSASMGPSIQVDVNSLRDLK 234
[Close]
BLAST of Spo27163.1 vs. ExPASy Swiss-Prot
Match: RL1_MICAN (50S ribosomal protein L1 OS=Microcystis aeruginosa (strain NIES-843) GN=rplA PE=3 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 7.300e-72
Identity = 137/229 (59.83%), Postives = 177/229 (77.29%), Query Frame = 1 

		  

Query: 119 SKRFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQLRATVS 178
           S+R  + Q   E K  Y+   AL+L+K++++ KF ETAEAH RL IDPKY DQQLR TVS
Sbjct: 6   SRRLRDAQAKVENKA-YEPLEALTLLKELATAKFDETAEAHIRLGIDPKYTDQQLRTTVS 65

Query: 179 LPKGTGKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIKGGFMDFDKLIATSDMMAKV 238
           LPKGTG+TV++AV+ +G+K+ EA  AGADIVG EELIE+I  G MDF+ LIAT DMM KV
Sbjct: 66  LPKGTGRTVRVAVITRGEKVQEANNAGADIVGSEELIEEIAKGMMDFEVLIATPDMMPKV 125

Query: 239 ASLGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLNFEEED 298
           A LGR LGPRGLMP+PK GTVT ++  A+ EFK GK+EFR D+TGIVH+ FGK +F  ED
Sbjct: 126 AKLGRQLGPRGLMPSPKGGTVTTDLTGAIAEFKAGKLEFRADRTGIVHVQFGKASFSAED 185

Query: 299 LLINLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREMLDYK 348
           LL+NL A  ++V+ N+P+GAKG YW++ ++SSSMGPSI+++I  + D K
Sbjct: 186 LLVNLKALQETVDRNRPSGAKGRYWRTVYVSSSMGPSIQVDISALRDLK 233
[Close]
BLAST of Spo27163.1 vs. TAIR (Arabidopsis)
Match: AT3G63490.1 (Ribosomal protein L1p/L10e family)

HSP 1 Score: 418.3 bits (1074), Expect = 4.700e-117
Identity = 231/354 (65.25%), Postives = 272/354 (76.84%), Query Frame = 1 

		  

Query: 2   ATAAPPSLSLCYASSSFQYQQDPSFQTHF-----KPLLLNSSLCRLTLNQRERSCLKWVD 61
           A A   SL L YA++S + Q      + F     +P  L+  L  L    R+R C   +D
Sbjct: 3   ACATHSSLMLAYAAASTRSQDLTPTPSLFSFASSRPNHLSFPLLLLG-GSRDRRCAA-ID 62

Query: 62  FTSQKQSPKSVSFRVLAAVAAEAEVADMEEEEGESGGVATLPSPTKPKKGKAALPLKSDR 121
             S  +        +++AVAAEA   D++ EE        +  P KPKKGKAAL LK DR
Sbjct: 63  RASNHKF-------IVSAVAAEA---DLDTEEDLEQTATAVLDPPKPKKGKAALVLKRDR 122

Query: 122 TRSKRFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQLRAT 181
           TRSKRFLEIQKLRE K+EYD+ TA+SL+KQ ++T+FVE+ EAHFRLNIDPKYNDQQLRAT
Sbjct: 123 TRSKRFLEIQKLRETKKEYDVNTAISLLKQTANTRFVESVEAHFRLNIDPKYNDQQLRAT 182

Query: 182 VSLPKGTGKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIKGGFMDFDKLIATSDMMA 241
           VSLPKGTG+TV +AVLAQG+K+DEAK+AGADIVG ++LIEQIKGGFM+FDKLIA+ DMM 
Sbjct: 183 VSLPKGTGQTVIVAVLAQGEKVDEAKSAGADIVGSDDLIEQIKGGFMEFDKLIASPDMMV 242

Query: 242 KVASLGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLNFEE 301
           KVA LG+ILGPRGLMP PKAGTVT N+ QA+EEFKKGKVEFR DKTGIVHIPFGK+NF E
Sbjct: 243 KVAGLGKILGPRGLMPNPKAGTVTANIPQAIEEFKKGKVEFRADKTGIVHIPFGKVNFTE 302

Query: 302 EDLLINLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREMLDYKPPS 351
           EDLLIN  A +KSVETNKP GAKGVYWKSAHI SSMGPSI+LNIREM+D+KPP+
Sbjct: 303 EDLLINFLAAVKSVETNKPKGAKGVYWKSAHICSSMGPSIKLNIREMIDFKPPT 344
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BLAST of Spo27163.1 vs. TAIR (Arabidopsis)
Match: AT2G42710.1 (Ribosomal protein L1p/L10e family)

HSP 1 Score: 160.2 bits (404), Expect = 2.300e-39
Identity = 117/333 (35.14%), Postives = 180/333 (54.05%), Query Frame = 1 

		  

Query: 48  ERSCLKWVDFTSQKQSPKSVSFR-----------VLAAVAAEAEVADMEEEE--GESGGV 107
           ++S  K V+ T   QSP+S ++             +  V+    VA + E+   GE+ G 
Sbjct: 75  QKSEPKNVESTENLQSPESANWTREEIRYVKDSPSINPVSYAQRVAPLPEDRVAGENEGD 134

Query: 108 ATLPSPTKPKKGKAALPLKSDRTRSKRFLEIQKLRE----------IKQE--------YD 167
            T   P + ++ +  + L++   R  RFL    + E          +K E        +D
Sbjct: 135 RT---PEEMERERKRIELENRARR--RFLRANAVEEDTSSLPLPTLLKPELKHGKKPIFD 194

Query: 168 LKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKTVKIAVLAQGD 227
           L  A+  +K  +  KF ET EAH RL I+   ++  +R T++LP    K VK+A  A+G 
Sbjct: 195 LMEAIREIKGNAKAKFDETLEAHVRLGIEKGRSELIVRGTLALPHSVKKDVKVAFFAEGA 254

Query: 228 KIDEAKAAGADIVGGEELIEQI-KGGFMDFDKLIATSDMMAKVASLGRILGPRGLMPTPK 287
             ++AKAAGAD+VGG ELIE+I K G +DFD+ +AT  MM +V  + RIL   GLMP PK
Sbjct: 255 DAEDAKAAGADVVGGLELIEEILKSGKIDFDRCLATPKMMPRVYKISRILNNHGLMPNPK 314

Query: 288 AGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLNFEEEDLLINLFATIKSVETNKP 344
            G+VT +V +AV++ K G  +FR+DKT I+H+P GK++F EE L  N+ A + ++   KP
Sbjct: 315 QGSVTKDVTKAVKDAKAGHTKFRMDKTSILHVPLGKMSFSEEALRENVGAFMNALLLAKP 374
The following BLAST results are available for this feature:
BLAST of Spo27163.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|75311086|sp|Q9LE95.1|RK1_SPIOL7.1e-192100.RecName: Full=50S ribosomal pr... [more]
gi|902155062|gb|KNA05869.1|2.1e-19199.7hypothetical protein SOVF_1863... [more]
gi|731316270|ref|XP_010694860.1|1.6e-15986.0PREDICTED: 50S ribosomal prote... [more]
gi|720044107|ref|XP_010269778.1|6.7e-12669.0PREDICTED: 50S ribosomal prote... [more]
gi|720095626|ref|XP_010246738.1|8.8e-12669.3PREDICTED: 50S ribosomal prote... [more]
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BLAST of Spo27163.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9QF10_SPIOL1.4e-19199.7Ribosomal protein OS=Spinacia ... [more]
A0A0J8CYE7_BETVU1.1e-15986.0Ribosomal protein OS=Beta vulg... [more]
A0A0D2QZ58_GOSRA3.4e-12467.4Ribosomal protein OS=Gossypium... [more]
K4AYG3_SOLLC3.4e-12470.0Ribosomal protein OS=Solanum l... [more]
A0A061DV91_THECC7.5e-12469.6Ribosomal protein OS=Theobroma... [more]
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BLAST of Spo27163.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RK1_SPIOL4.4e-194100.50S ribosomal protein L1, chlo... [more]
RK1_ARATH8.3e-11665.250S ribosomal protein L1, chlo... [more]
RK1_GRATL2.5e-7258.850S ribosomal protein L1, chlo... [more]
RL1_CYAP77.3e-7257.250S ribosomal protein L1 OS=Cy... [more]
RL1_MICAN7.3e-7259.850S ribosomal protein L1 OS=Mi... [more]
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BLAST of Spo27163.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2
Match NameE-valueIdentityDescription
AT3G63490.14.7e-11765.2Ribosomal protein L1p/L10e fam... [more]
AT2G42710.12.3e-3935.1Ribosomal protein L1p/L10e fam... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005878Ribosomal protein L1, bacterial-typeHAMAPMF_01318_BRibosomal_L1_Bcoord: 115..343
score: 3
IPR005878Ribosomal protein L1, bacterial-typeTIGRFAMsTIGR01169TIGR01169coord: 118..342
score: 1.1
IPR016094Ribosomal protein L1, 2-layer alpha/beta-sandwichGENE3D3.30.190.20coord: 132..182
score: 2.1E-41coord: 275..341
score: 2.1
IPR016095Ribosomal protein L1, 3-layer alpha/beta-sandwichGENE3D3.40.50.790coord: 183..273
score: 1.9
IPR023673Ribosomal protein L1, conserved sitePROSITEPS01199RIBOSOMAL_L1coord: 235..253
scor
IPR023674Ribosomal protein L1-likeunknownSSF56808Ribosomal protein L1coord: 122..340
score: 8.24
NoneNo IPR availablePANTHERPTHR23105RIBOSOMAL PROTEIN L7AE FAMILY MEMBERcoord: 66..346
score: 2.3
NoneNo IPR availablePANTHERPTHR23105:SF539S RIBOSOMAL PROTEIN L1, MITOCHONDRIALcoord: 66..346
score: 2.3

GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
biological_process GO:0034660 ncRNA metabolic process
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0045036 protein targeting to chloroplast
biological_process GO:0042793 plastid transcription
biological_process GO:0015979 photosynthesis
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0016226 iron-sulfur cluster assembly
biological_process GO:0006354 DNA-templated transcription, elongation
biological_process GO:0009902 chloroplast relocation
biological_process GO:0009073 aromatic amino acid family biosynthetic process
cellular_component GO:0015934 large ribosomal subunit
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0005634 nucleus
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003723 RNA binding
molecular_function GO:0019843 rRNA binding