Spo24554.1 (mRNA) | SpinachBase

Overview


Name	Spo24554.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	chr1 : 11013808 .. 11018470 (+)
Sequence length	1010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGAAATAACAAGTTCATCGTTAATGTTCACGAAAAGATAAAGAGAAATTAGAAAAAGAAAAATTGTGTTCGTCGTTATTCTCAATTCCCAGTAGCGCCATGTTTTTATTTTCGTTGGCCGACGCCGCCGACCTCAAAATTCACTCATCTCCATCTCTCGGACCTAAAACCTTCAATTGAATTCGCAGTTTTGCGATTCATGTTATTCTAAATGAAAATAATGGCTTTTCTATCTTCCCCCTCTCTATATCCTTGACCAAAGATGCAATGGAATTAGTCCATGTACGGCGGGCGCCATTAACCTTGAATTCGATCGCCCTATGCGCAACAACATTTGCTTATTTGGTAATGTTTTCTCCCTCTTCTATACTTTCATGATCTTTTCCTTTAAAAATAAATTAGGGTTTGATTTAGCCTCTTTGGTTCAAGTGATTGAAATTGTGTTCAGATAACGCTGACAATTTTTTGAATTGCCATTATCTAATTCGTTCTTTGTATGTTCCGTAAGGTATTTTTCTTTAATTAATAATTTAATACCATTAATATCAAGCCTTTTTTGTATGAATTGAATTATTAGTTGAATCTTGTATTCCAGATTGAAACTCCTGTAATTTATTCAAATTGGAAGGCAAAACTGATTTTATTCTCTTCTGCGTTTGGGGTAAATCTTGGGCATACGGGTTATAGTGATTGTGAAGAAATTGATTCCAACATGAGAGAACGATATTGAATGATTTAGAGCTGTTAGACACTAGGCTTGCTAAGTAGAGGTTTTCTCATACTGAAACTTTGGTGGAAGGAAATGGAAAGGGTTTGGCTGAAGAATTGGATGGTTCTAGAAGGATATATGAAACTTACAAGCAGGATTTACTTCTTGTTAATAGTTGTAATTATAGTTTTGGAGCTCACGATGTAAAAGAACAGGTTTTTCACTACTCTTTCTTGTAGGGAATATGGAAGTCGTGCCTAATATATTTTCTTTTATTATAGAAGTTACAACTTTGTTTTTTTCACCTTTCAAAGTTTGAGAAAAATATGTTTCCAAGTTCAAATTCAGTTGATCATAACGAAAAATAGATGTGATAAGTACAGATAAGTTAATTTCAAGTGAAAAGAATGAATTTTTAGTAATCAGAGTGGTAGTCTTCTTAAGCTAGCTCAACTGAGTACAAAATTTGACTATGCTCTAGATTTCATATACACTTTTCCTGTAATTTTCAGGACATGTTTTGAAGAGAGTAGTGGCACACAGTCGTTGCGGGGTGATACTGCATTACTGAGTACCTGGAATCTGCGGCTTTCAGCAAAGTTGTTCAGGCTCATGATATCCAGACTGGAGTTTATGTTTGCCTGAAAGTCATTAGAAATGACAGATTTTGTTTGTAAAAGTTTGGACGAAATCGAACTTCTCAAGTATGTCAACAAGAATGATCCTGCAGATAAGCACCTTTTACATCTCTATGACTACTTTTACCATCTCTTCCCCCCCCCCCCCCCGNTCCCCCCCCCCCCCATGGGTCCGTGACATGCAGGCTTAGATTTTTATTGTCCTATACGAAGTGATTAATTCCAGATTCTTGTTTACGTATACAGAAGCACCTTTTCATTGTATGTGAACTTCTTCGAGCTAATATATATGACTTTCAGAAATATAATATAGAATCTGGTGGAGAACCCTACTTTACAATGAGTAGATTGCAGGTACTTGTTCTACTAAGTTGCATTTATCTGTTAATGGAACCCATGAAACTGGTTTTTAACGATGTTTTTTAGCATTTAAATGTAAGGAGCTCCTATAAATCCTGTTTTTGTAAATCATAGCACGGGTCCTAATTGTCGTTGGCGCTTTTCACCCTAATATCACTTCAAGTTGTTTTCTATTTCCTGCCTGGTTTTAAGTATGGCATCACGACCCTAATATTTTTTCTTTGATATATGAAGATTTGTTTTAATTTTATAAGAACCAATTAGTCTATGGTTAGGTGGGATTCAATTTGCCTCAGCGCAATTGCCTCATCTGGAGCACTTATAGGCTTTTTGGACTTTTCATATGTGACTTTGTTTCTGAGTTAGGTAGTTAAACAAAATGCAGGCTCTAAATTTAAACGATCCAGAGCTCAAAGACCTGAACCTTACTTCATGTAGAAACTTGCAGGTTTGTATTTTAGATGGTCTAATTTACAATGGATGATTTTAGCAAATACTGCTAGTTGTTAAGGTTTCTAATGAGGTTTCTTGCTTTATTTAGAGAGGTTACTACTCTAGTTTCCCAATTTGGAATGCGTCAAATTTCCTTGCGTTAGATTATTGAAACTGAGGTTATATCAATTCCCTTGTACAAGTTCAATGATAAACCTTCCCCTGACTATGTTGGTCTTAATTACTGTTGTTTCATATGTTGATTATGAAGTATAACATGAAAAGGGTTCCATTGAAATTTTATGCAATAAAAAAATCTTCTTGTAAAGAAGCTGGCCAATGCCTAGTAAGTTAGTAGCCTTAGTAAAGAAATCTAGTGGATAATTTGGTCAGAAGCTTTTGTTTGTTAGTGTTATGTTCAAAATGAAAGCAACCTTGTTTATATTAACTGAAAAGATCAATCAGTTTTGACATTCATTGTGAAATTCTTGCAGATAAGAAAGTTCCACTAGAAAGCCAATTTCTAAGCAAGCGCATGGCTGGTGGAGATCCAAGAGAGTTGGATTTCCTCACATTCTCATCTAGCAAGTACATATTATACTTTGTATTACTTGCATAAGATACTAAATTATCATGGTTTTTATGTTTAAATTGCCGGTGCGGTGGTGCAAAGTCTTTTTTGTTTGTTAAATTGTCGGTGCGATAGTACATACCCATCCTGCTCATGTTTGTCAAAGAATTTAGATTTATTTTGGATTGTTTTGCAAAAGAGTTATTCTATAGTATGAGCTAGATTGGTTTAAGAAATAACTTTGCTTGTTTCTTTGCTAGTTTTTTGCAAGCTATAATTTTGTTTTAATTTAACCGAGCAACGCTTTAATGTGAATCAACAAAACTAGTATTACTAGGTAGCATTCGGCATAACTTACCAGGGTTTTGAACATTGTTGTTGGGGGATGAAGAAGATGTACATTACTTTTCCATATAGCACTTTCTTTCGGACGTTCATCTCATCTTGAACTTACCTACCTGGCAACGTAAAAGTATTTTTTGTTCCATATACTGCGACAAAGGAATACTTTCAGTTGCTCTAAATTTTTTTTGTTCCTTAGTTCTAAGTTTCTAATGTCTGGCAAGAGATAGTACATAGTCATGCAATAATCCCCTTTCATTCCTTCCCCTGTTATCAGCATGCAATATTGTTCTATTGTTAAAATATTACCTGAAAAGAAAACCTAGTATATTTAATTTCTTTTATTCCACCACTTTGCTGATTAACTATATATGCTTAATTTTTTGTTCATTCCTGGCATGAAGACCACCAGTCACGATATTTAGGTGAATAGGTTAAGTCAGTGAATAACGTTAATTAGGCTTTATCTCCACACAAGCTAATACTGGCAGTCTTCTCAAATAGTGTGTAATAGTCGTATAGGGGCACTTTTGGCATTGCATTATGATTCTATTACTTGGTAGCTTGAGGGATAAGTTAACTGGTTAGAGTAGAGAGGGAAGAAAAAGAAGCAGAATATCTGTACATATGGAGGATATAAGTGAGAACCATAATCTTCTTTTATATTTAAATATTCAGTACATTACATAATTACATAATGGTGGTCGTATGTGGTTGCTGACATCTTTGTTTTGTACTTTTGTCAATGGTGTAGGAAGTACGTTCTGTTTTTGTATTCTTCAGATCTAGATTTGGTGCTGCAATTGCTTCACGTTTACGACAATCTGAGAAACATACAGAATTGGTTAAGGAGCAAGCTCCTGAGCCAGATGATGTGTACCGGCCATTTTCCAAGAAACGTTCTTGTAAAGATGGATGTCTAGAGTGGTAATAATAGTCGCAAGCACACATTTCTGACTGTTCTATTTCTTATACCAGTTGTGCTTGTGCAAGTCTTGCCAATCTGTCCCAACTGGAGGTCTGGTTCCCCTTCTTGGCAAGCATTTTAACCGCATAAGTGATTATTCCATCTCCCGAGTTTCTGTGAAAATTGCTAGTTCAATCTGCCTGTCATAGAAAAATTTTAGAATCGTAATTTTTTTCTTCTTTTAATCATCATTTTAATTGGGCCTTAAACTTATGTTAGATTTTAAGATTTGGAGAGAAGAAATCAAGGAGGAAGAAGGTTTATTGAAGTCTGCATGGAAGGCTACCCTGAAGAGCTCTCAAGCTTTTGTCGGACTACATTTTTGCATATAGTTGTGTGTTGATCAACTAGTTAGATTTTTATTTTTTTCTTTTCGATTGAACAAGAATTATTTATCTTTAGCTTTTTAAGAATTTTTTTATTTAAAGATGTGATTTTTGATTTACCATAACTTGAAATTCTATTGTCAAAAATATTTTGAGTAATGAAATTTTAATTTGTTTAATTGATTTATATCTATATTGGTTCACAGGGAAAATGTAGGTGCTTCGAAAAGCGCAAATAATATTATTATGATTGCAATATTAACGACATAATAGTTGGTCGTTATTGCCAAAATTCAAATTTTTTGACCGTTGGGAAGG

mRNA sequence

AAGAAATAACAAGTTCATCGTTAATGTTCACGAAAAGATAAAGAGAAATTAGAAAAAGAAAAATTGTGTTCGTCGTTATTCTCAATTCCCAGTAGCGCCATGTTTTTATTTTCGTTGGCCGACGCCGCCGACCTCAAAATTCACTCATCTCCATCTCTCGGACCTAAAACCTTCAATTGAATTCGCAGTTTTGCGATTCATGTTATTCTAAATGAAAATAATGGCTTTTCTATCTTCCCCCTCTCTATATCCTTGACCAAAGATGCAATGGAATTAGTCCATGTACGGCGGGCGCCATTAACCTTGAATTCGATCGCCCTATGCGCAACAACATTTGCTTATTTGGACATGTTTTGAAGAGAGTAGTGGCACACAGTCGTTGCGGGATTGCAGATAAGAAAGTTCCACTAGAAAGCCAATTTCTAAGCAAGCGCATGGCTGGTGGAGATCCAAGAGAGTTGGATTTCCTCACATTCTCATCTAGCAAGAAGTACGTTCTGTTTTTGTATTCTTCAGATCTAGATTTGGTGCTGCAATTGCTTCACTTGTGCTTGTGCAAGTCTTGCCAATCTGTCCCAACTGGAGATTTTAAGATTTGGAGAGAAGAAATCAAGGAGGAAGAAGGTTTATTGAAGTCTGCATGGAAGGCTACCCTGAAGAGCTCTCAAGCTTTTGTCGGACTACATTTTTGCATATAGTTGTGTGTTGATCAACTAGTTAGATTTTTATTTTTTTCTTTTCGATTGAACAAGAATTATTTATCTTTAGCTTTTTAAGAATTTTTTTATTTAAAGATGTGATTTTTGATTTACCATAACTTGAAATTCTATTGTCAAAAATATTTTGAGTAATGAAATTTTAATTTGTTTAATTGATTTATATCTATATTGGTTCACAGGGAAAATGTAGGTGCTTCGAAAAGCGCAAATAATATTATTATGATTGCAATATTAACGACATAATAGTTGGTCGTTATTGCCAAAATTCAAATTTTTTGACCGTTGGGAAGG

Coding sequence (CDS)

ATGCGCAACAACATTTGCTTATTTGGACATGTTTTGAAGAGAGTAGTGGCACACAGTCGTTGCGGGATTGCAGATAAGAAAGTTCCACTAGAAAGCCAATTTCTAAGCAAGCGCATGGCTGGTGGAGATCCAAGAGAGTTGGATTTCCTCACATTCTCATCTAGCAAGAAGTACGTTCTGTTTTTGTATTCTTCAGATCTAGATTTGGTGCTGCAATTGCTTCACTTGTGCTTGTGCAAGTCTTGCCAATCTGTCCCAACTGGAGATTTTAAGATTTGGAGAGAAGAAATCAAGGAGGAAGAAGGTTTATTGAAGTCTGCATGGAAGGCTACCCTGAAGAGCTCTCAAGCTTTTGTCGGACTACATTTTTGCATATAG

Protein sequence

MRNNICLFGHVLKRVVAHSRCGIADKKVPLESQFLSKRMAGGDPRELDFLTFSSSKKYVLFLYSSDLDLVLQLLHLCLCKSCQSVPTGDFKIWREEIKEEEGLLKSAWKATLKSSQAFVGLHFCI

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo24554	Spo24554	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo24554.1	Spo24554.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo24554.1.exon.1	Spo24554.1.exon.1	exon
Spo24554.1.exon.2	Spo24554.1.exon.2	exon
Spo24554.1.exon.3	Spo24554.1.exon.3	exon
Spo24554.1.exon.4	Spo24554.1.exon.4	exon
Spo24554.1.exon.5	Spo24554.1.exon.5	exon
Spo24554.1.exon.6	Spo24554.1.exon.6	exon
Spo24554.1.exon.7	Spo24554.1.exon.7	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo24554.1.utr5p.1	Spo24554.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo24554.1.CDS.1	Spo24554.1.CDS.1	CDS
Spo24554.1.CDS.2	Spo24554.1.CDS.2	CDS
Spo24554.1.CDS.3	Spo24554.1.CDS.3	CDS
Spo24554.1.CDS.4	Spo24554.1.CDS.4	CDS
Spo24554.1.CDS.5	Spo24554.1.CDS.5	CDS
Spo24554.1.CDS.6	Spo24554.1.CDS.6	CDS
Spo24554.1.CDS.7	Spo24554.1.CDS.7	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo24554.1.utr3p.1	Spo24554.1.utr3p.1	three_prime_UTR

Homology

[Close]

BLAST of Spo24554.1 vs. NCBI nr
Match: gi|902197033|gb|KNA13297.1| (hypothetical protein SOVF_118020 [Spinacia oleracea])

HSP 1 Score: 75.9 bits (185), Expect = 5.700e-11
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 1

		  
Query: 39 MAGGDPRELDFLTFSSSKKYVLFLYSSDLDLVLQLLHL 77
          MAGGDPRELDFLTFSSSKKYVLFLYSSDLDLVLQLLH+
Sbjct: 1  MAGGDPRELDFLTFSSSKKYVLFLYSSDLDLVLQLLHV 38

[Close]

BLAST of Spo24554.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R3B9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_118020 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 4.000e-11
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 1

		  
Query: 39 MAGGDPRELDFLTFSSSKKYVLFLYSSDLDLVLQLLHL 77
          MAGGDPRELDFLTFSSSKKYVLFLYSSDLDLVLQLLH+
Sbjct: 1  MAGGDPRELDFLTFSSSKKYVLFLYSSDLDLVLQLLHV 38

The following BLAST results are available for this feature:

BLAST of Spo24554.1 vs. NCBI nr
BLAST of Spo24554.1 vs. UniProtKB/TrEMBL
BLAST of Spo24554.1 vs. ExPASy Swiss-Prot
BLAST of Spo24554.1 vs. TAIR (Arabidopsis)

BLAST of Spo24554.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
gi\|902197033\|gb\|KNA13297.1\|	5.7e-11	97.3	hypothetical protein SOVF_1180...	[more]

BLAST of Spo24554.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0K9R3B9_SPIOL	4.0e-11	97.3	Uncharacterized protein OS=Spi...	[more]

BLAST of Spo24554.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo24554.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description