Spo24936.1 (mRNA) | SpinachBase

Overview


Name	Spo24936.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Elongation factor 1-alpha
Location	chr1 : 30205898 .. 30206465 (+)
Sequence length	501

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACCACGAGTCCCTTCCAGAGGCTCTTCCTGGTGACAATGTTGGTTTCAATGTCAAGAATGTTGCAGTCAAGGATATCAAGCGTGGATACGTTGCATCTGACTCAAAGAACGACCCTGCTAAGGAGGCAGCCAACTTCATTGCTCAGGTCATCATCATGAACCACCCTGGTCAGANACGACCCTGCTAAGGAGGCAGCCAACTTCATTGCTCAGGTCATCATCATGAACCACCCTGGTCAGATTGGAAACGGATACGCCCCAGTGTTGGACTGTCACACCTCTCACATTGCTGTCAAGTTTGCTGAGCTTGTGACTAAGATTGACAGGCGTTCCGGAAAGGAGCTTGAGAAGGAGCCCAAGTTCTTGAAGAATGGTGATGCTGGTATGGTAAAGATGATTCCCACCAAGCCAATGGTGGTGGAAACTTTCTCACAGTACCCACCCCTTGGTCGTTTTGCCGTGAGGGACATGAGACAGACCGTTGCTGTTGGTGTCATCAAGAGTGTTGAGAAGAAGGACCCAACTGGAGCCAAGGTCACCAAGGCTGCCCTAAAGAAGAAATGA

mRNA sequence

ATGCACCACGAGTCCCTTCCAGAGGCTCTTCCTGGTGACAATGTTGGTTTCAATGTCAAGAATGTTGCAGTCAAGGATATCAAGCGTGGATACGTTGCATCTGACTCAAAGAACGACCCTGCTAAGGAGGCAGCCAACTTCATTGCTCAGGTCATCATCATGAACCACCCTGGTCAGATTGGAAACGGATACGCCCCAGTGTTGGACTGTCACACCTCTCACATTGCTGTCAAGTTTGCTGAGCTTGTGACTAAGATTGACAGGCGTTCCGGAAAGGAGCTTGAGAAGGAGCCCAAGTTCTTGAAGAATGGTGATGCTGGTATGGTAAAGATGATTCCCACCAAGCCAATGGTGGTGGAAACTTTCTCACAGTACCCACCCCTTGGTCGTTTTGCCGTGAGGGACATGAGACAGACCGTTGCTGTTGGTGTCATCAAGAGTGTTGAGAAGAAGGACCCAACTGGAGCCAAGGTCACCAAGGCTGCCCTAAAGAAGAAATGA

Coding sequence (CDS)

ATGCACCACGAGTCCCTTCCAGAGGCTCTTCCTGGTGACAATGTTGGTTTCAATGTCAAGAATGTTGCAGTCAAGGATATCAAGCGTGGATACGTTGCATCTGACTCAAAGAACGACCCTGCTAAGGAGGCAGCCAACTTCATTGCTCAGGTCATCATCATGAACCACCCTGGTCAGATTGGAAACGGATACGCCCCAGTGTTGGACTGTCACACCTCTCACATTGCTGTCAAGTTTGCTGAGCTTGTGACTAAGATTGACAGGCGTTCCGGAAAGGAGCTTGAGAAGGAGCCCAAGTTCTTGAAGAATGGTGATGCTGGTATGGTAAAGATGATTCCCACCAAGCCAATGGTGGTGGAAACTTTCTCACAGTACCCACCCCTTGGTCGTTTTGCCGTGAGGGACATGAGACAGACCGTTGCTGTTGGTGTCATCAAGAGTGTTGAGAAGAAGGACCCAACTGGAGCCAAGGTCACCAAGGCTGCCCTAAAGAAGAAATGA

Protein sequence

MHHESLPEALPGDNVGFNVKNVAVKDIKRGYVASDSKNDPAKEAANFIAQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSQYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGAKVTKAALKKK

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo24936	Spo24936	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo24936.1	Spo24936.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo24936.1.exon.1	Spo24936.1.exon.1	exon
Spo24936.1.exon.2	Spo24936.1.exon.2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo24936.1.CDS.1	Spo24936.1.CDS.1	CDS
Spo24936.1.CDS.2	Spo24936.1.CDS.2	CDS

Homology

[Close]

BLAST of Spo24936.1 vs. NCBI nr
Match: gi|902236558|gb|KNA24433.1| (hypothetical protein SOVF_015920 [Spinacia oleracea])

HSP 1 Score: 332.0 bits (850), Expect = 5.900e-88
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 1


		  
Query: 1   MHHESLPEALPGDNVGFNVKNVAVKDIKRGYVASDSKNDPAKEAANFIAQVIIMNHPGQI 60
           MHHESLPEALPGDNVGFNVKNVAVKDIKRGYVASDSKNDPAKEAANFIAQVIIMNHPGQI
Sbjct: 128 MHHESLPEALPGDNVGFNVKNVAVKDIKRGYVASDSKNDPAKEAANFIAQVIIMNHPGQI 187

Query: 61  GNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVE 120
           GNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVE
Sbjct: 188 GNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVE 247

Query: 121 TFSQYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGAKVTKAALKKK 167
           TFSQYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGAKVTKAALKKK
Sbjct: 248 TFSQYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGAKVTKAALKKK 293

[Close]

BLAST of Spo24936.1 vs. NCBI nr
Match: gi|902213768|gb|KNA17332.1| (hypothetical protein SOVF_080880 [Spinacia oleracea])

HSP 1 Score: 332.0 bits (850), Expect = 5.900e-88
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 1


		  
Query: 1   MHHESLPEALPGDNVGFNVKNVAVKDIKRGYVASDSKNDPAKEAANFIAQVIIMNHPGQI 60
           MHHESLPEALPGDNVGFNVKNVAVKDIKRGYVASDSKNDPAKEAANFIAQVIIMNHPGQI
Sbjct: 282 MHHESLPEALPGDNVGFNVKNVAVKDIKRGYVASDSKNDPAKEAANFIAQVIIMNHPGQI 341

Query: 61  GNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVE 120
           GNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVE
Sbjct: 342 GNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVE 401

Query: 121 TFSQYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGAKVTKAALKKK 167
           TFSQYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGAKVTKAALKKK
Sbjct: 402 TFSQYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGAKVTKAALKKK 447

[Close]

BLAST of Spo24936.1 vs. NCBI nr
Match: gi|731318327|ref|XP_010669660.1| (PREDICTED: elongation factor 1-alpha-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 326.6 bits (836), Expect = 2.500e-86
Identity = 161/166 (96.99%), Postives = 166/166 (100.00%), Query Frame = 1


		  
Query: 1   MHHESLPEALPGDNVGFNVKNVAVKDIKRGYVASDSKNDPAKEAANFIAQVIIMNHPGQI 60
           MHHESLPEALPGDNVGFNVKNVAVKD+KRG+VASDSKNDPAKEAANFIAQVIIMNHPGQI
Sbjct: 282 MHHESLPEALPGDNVGFNVKNVAVKDLKRGFVASDSKNDPAKEAANFIAQVIIMNHPGQI 341

Query: 61  GNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVE 120
           GNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKE+EKEPKFLKNGDAGMVKMIPTKPMVVE
Sbjct: 342 GNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKEIEKEPKFLKNGDAGMVKMIPTKPMVVE 401

Query: 121 TFSQYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGAKVTKAALKKK 167
           TFS+YPPLGRFAVRDMRQTVAVGVIK+VEKKDPTGAKVTKAALKKK
Sbjct: 402 TFSEYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTGAKVTKAALKKK 447

[Close]

BLAST of Spo24936.1 vs. NCBI nr
Match: gi|24371059|dbj|BAC22127.1| (eukaryotic elongation factor 1A [Salsola komarovii])

HSP 1 Score: 325.5 bits (833), Expect = 5.500e-86
Identity = 160/166 (96.39%), Postives = 165/166 (99.40%), Query Frame = 1


		  
Query: 1   MHHESLPEALPGDNVGFNVKNVAVKDIKRGYVASDSKNDPAKEAANFIAQVIIMNHPGQI 60
           MHHESLPEALPGDNVGFNVKNVAVKDIKRG+VASDSKNDPAKEAANF AQVIIMNHPGQI
Sbjct: 282 MHHESLPEALPGDNVGFNVKNVAVKDIKRGFVASDSKNDPAKEAANFTAQVIIMNHPGQI 341

Query: 61  GNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVE 120
           GNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGM+KM+PTKPMVVE
Sbjct: 342 GNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMIKMVPTKPMVVE 401

Query: 121 TFSQYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGAKVTKAALKKK 167
           TFS+YPPLGRFAVRDMRQTVAVGVIK+VEKKDPTGAKVTKAALKKK
Sbjct: 402 TFSEYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTGAKVTKAALKKK 447

[Close]

BLAST of Spo24936.1 vs. NCBI nr
Match: gi|731318323|ref|XP_010669657.1| (PREDICTED: elongation factor 1-alpha [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 324.7 bits (831), Expect = 9.400e-86
Identity = 160/166 (96.39%), Postives = 165/166 (99.40%), Query Frame = 1


		  
Query: 1   MHHESLPEALPGDNVGFNVKNVAVKDIKRGYVASDSKNDPAKEAANFIAQVIIMNHPGQI 60
           MHHESLPEALPGDNVGFNVKNVAVKD+KRG+VASDSKNDPAKEAANF AQVIIMNHPGQI
Sbjct: 282 MHHESLPEALPGDNVGFNVKNVAVKDLKRGFVASDSKNDPAKEAANFTAQVIIMNHPGQI 341

Query: 61  GNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVE 120
           GNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKE+EKEPKFLKNGDAGMVKMIPTKPMVVE
Sbjct: 342 GNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKEIEKEPKFLKNGDAGMVKMIPTKPMVVE 401

Query: 121 TFSQYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGAKVTKAALKKK 167
           TFS+YPPLGRFAVRDMRQTVAVGVIK+VEKKDPTGAKVTKAALKKK
Sbjct: 402 TFSEYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTGAKVTKAALKKK 447

[Close]

BLAST of Spo24936.1 vs. UniProtKB/TrEMBL
Match: A0A0K9REQ2_SPIOL (Elongation factor 1-alpha OS=Spinacia oleracea GN=SOVF_080880 PE=3 SV=1)

HSP 1 Score: 332.0 bits (850), Expect = 4.100e-88
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 1


		  
Query: 1   MHHESLPEALPGDNVGFNVKNVAVKDIKRGYVASDSKNDPAKEAANFIAQVIIMNHPGQI 60
           MHHESLPEALPGDNVGFNVKNVAVKDIKRGYVASDSKNDPAKEAANFIAQVIIMNHPGQI
Sbjct: 282 MHHESLPEALPGDNVGFNVKNVAVKDIKRGYVASDSKNDPAKEAANFIAQVIIMNHPGQI 341

Query: 61  GNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVE 120
           GNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVE
Sbjct: 342 GNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVE 401

Query: 121 TFSQYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGAKVTKAALKKK 167
           TFSQYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGAKVTKAALKKK
Sbjct: 402 TFSQYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGAKVTKAALKKK 447

[Close]

BLAST of Spo24936.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RY98_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_015920 PE=4 SV=1)

HSP 1 Score: 332.0 bits (850), Expect = 4.100e-88
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 1


		  
Query: 1   MHHESLPEALPGDNVGFNVKNVAVKDIKRGYVASDSKNDPAKEAANFIAQVIIMNHPGQI 60
           MHHESLPEALPGDNVGFNVKNVAVKDIKRGYVASDSKNDPAKEAANFIAQVIIMNHPGQI
Sbjct: 128 MHHESLPEALPGDNVGFNVKNVAVKDIKRGYVASDSKNDPAKEAANFIAQVIIMNHPGQI 187

Query: 61  GNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVE 120
           GNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVE
Sbjct: 188 GNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVE 247

Query: 121 TFSQYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGAKVTKAALKKK 167
           TFSQYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGAKVTKAALKKK
Sbjct: 248 TFSQYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGAKVTKAALKKK 293

[Close]

BLAST of Spo24936.1 vs. UniProtKB/TrEMBL
Match: A0A0J8D0N7_BETVU (Elongation factor 1-alpha OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g036370 PE=3 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 1.700e-86
Identity = 161/166 (96.99%), Postives = 166/166 (100.00%), Query Frame = 1


		  
Query: 1   MHHESLPEALPGDNVGFNVKNVAVKDIKRGYVASDSKNDPAKEAANFIAQVIIMNHPGQI 60
           MHHESLPEALPGDNVGFNVKNVAVKD+KRG+VASDSKNDPAKEAANFIAQVIIMNHPGQI
Sbjct: 282 MHHESLPEALPGDNVGFNVKNVAVKDLKRGFVASDSKNDPAKEAANFIAQVIIMNHPGQI 341

Query: 61  GNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVE 120
           GNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKE+EKEPKFLKNGDAGMVKMIPTKPMVVE
Sbjct: 342 GNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKEIEKEPKFLKNGDAGMVKMIPTKPMVVE 401

Query: 121 TFSQYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGAKVTKAALKKK 167
           TFS+YPPLGRFAVRDMRQTVAVGVIK+VEKKDPTGAKVTKAALKKK
Sbjct: 402 TFSEYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTGAKVTKAALKKK 447

[Close]

BLAST of Spo24936.1 vs. UniProtKB/TrEMBL
Match: Q8H9A9_9CARY (Elongation factor 1-alpha OS=Salsola komarovii GN=skef-1A PE=2 SV=1)

HSP 1 Score: 325.5 bits (833), Expect = 3.800e-86
Identity = 160/166 (96.39%), Postives = 165/166 (99.40%), Query Frame = 1


		  
Query: 1   MHHESLPEALPGDNVGFNVKNVAVKDIKRGYVASDSKNDPAKEAANFIAQVIIMNHPGQI 60
           MHHESLPEALPGDNVGFNVKNVAVKDIKRG+VASDSKNDPAKEAANF AQVIIMNHPGQI
Sbjct: 282 MHHESLPEALPGDNVGFNVKNVAVKDIKRGFVASDSKNDPAKEAANFTAQVIIMNHPGQI 341

Query: 61  GNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVE 120
           GNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGM+KM+PTKPMVVE
Sbjct: 342 GNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMIKMVPTKPMVVE 401

Query: 121 TFSQYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGAKVTKAALKKK 167
           TFS+YPPLGRFAVRDMRQTVAVGVIK+VEKKDPTGAKVTKAALKKK
Sbjct: 402 TFSEYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTGAKVTKAALKKK 447

[Close]

BLAST of Spo24936.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QDK9_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_196600 PE=4 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 6.500e-86
Identity = 162/166 (97.59%), Postives = 163/166 (98.19%), Query Frame = 1


		  
Query: 1   MHHESLPEALPGDNVGFNVKNVAVKDIKRGYVASDSKNDPAKEAANFIAQVIIMNHPGQI 60
           MHHESLPEALPGDNVGFNVKNVAVKDIKRGYVASDSKNDPAKEAANF AQVIIMNHPGQI
Sbjct: 75  MHHESLPEALPGDNVGFNVKNVAVKDIKRGYVASDSKNDPAKEAANFTAQVIIMNHPGQI 134

Query: 61  GNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVE 120
           GNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAG VKMIPTKPMVVE
Sbjct: 135 GNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVE 194

Query: 121 TFSQYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGAKVTKAALKKK 167
           TF+ YPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGAKVTKAALKKK
Sbjct: 195 TFAAYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGAKVTKAALKKK 240

[Close]

BLAST of Spo24936.1 vs. ExPASy Swiss-Prot
Match: EF1A_MAIZE (Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3 SV=1)

HSP 1 Score: 315.1 bits (806), Expect = 4.600e-85
Identity = 156/166 (93.98%), Postives = 162/166 (97.59%), Query Frame = 1


		  
Query: 1   MHHESLPEALPGDNVGFNVKNVAVKDIKRGYVASDSKNDPAKEAANFIAQVIIMNHPGQI 60
           MHHE+L EALPGDNVGFNVKNVAVKD+KRGYVAS SK+DPAKEAA+F +QVIIMNHPGQI
Sbjct: 282 MHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASGSKDDPAKEAASFTSQVIIMNHPGQI 341

Query: 61  GNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVE 120
           GNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKM+PTKPMVVE
Sbjct: 342 GNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMVPTKPMVVE 401

Query: 121 TFSQYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGAKVTKAALKKK 167
           TFSQYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGAKVTKAA KKK
Sbjct: 402 TFSQYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGAKVTKAAAKKK 447

[Close]

BLAST of Spo24936.1 vs. ExPASy Swiss-Prot
Match: EF1A_ORYSJ (Elongation factor 1-alpha OS=Oryza sativa subsp. japonica GN=REFA1 PE=2 SV=2)

HSP 1 Score: 313.9 bits (803), Expect = 1.000e-84
Identity = 155/166 (93.37%), Postives = 163/166 (98.19%), Query Frame = 1


		  
Query: 1   MHHESLPEALPGDNVGFNVKNVAVKDIKRGYVASDSKNDPAKEAANFIAQVIIMNHPGQI 60
           MHHE+L EALPGDNVGFNVKNVAVKD+KRGYVAS+SK+DPAKEAA+F +QVIIMNHPGQI
Sbjct: 282 MHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAASFTSQVIIMNHPGQI 341

Query: 61  GNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVE 120
           GNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVE
Sbjct: 342 GNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVE 401

Query: 121 TFSQYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGAKVTKAALKKK 167
           TFS+YPPLGRFAVRDMRQTVAVGVIK+VEKKDPTGAKVTKAA KKK
Sbjct: 402 TFSEYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTGAKVTKAAAKKK 447

[Close]

BLAST of Spo24936.1 vs. ExPASy Swiss-Prot
Match: EF1A_VICFA (Elongation factor 1-alpha OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 1.800e-84
Identity = 153/166 (92.17%), Postives = 163/166 (98.19%), Query Frame = 1


		  
Query: 1   MHHESLPEALPGDNVGFNVKNVAVKDIKRGYVASDSKNDPAKEAANFIAQVIIMNHPGQI 60
           MHHE+L EALPGDNVGFNVKNVAVKD+KRG+VAS+SK+DPAKEAANF +QVIIMNHPGQI
Sbjct: 282 MHHEALTEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKEAANFTSQVIIMNHPGQI 341

Query: 61  GNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVE 120
           GNGYAPVLDCHTSHIAVKFAEL+TKIDRRSGKE+EKEPKFLKNGDAGMVKMIPTKPMVVE
Sbjct: 342 GNGYAPVLDCHTSHIAVKFAELITKIDRRSGKEIEKEPKFLKNGDAGMVKMIPTKPMVVE 401

Query: 121 TFSQYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGAKVTKAALKKK 167
           TF++YPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGAKVTKAA KKK
Sbjct: 402 TFAEYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGAKVTKAAAKKK 447

[Close]

BLAST of Spo24936.1 vs. ExPASy Swiss-Prot
Match: EF1A2_DAUCA (Elongation factor 1-alpha OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 311.6 bits (797), Expect = 5.100e-84
Identity = 154/166 (92.77%), Postives = 160/166 (96.39%), Query Frame = 1


		  
Query: 1   MHHESLPEALPGDNVGFNVKNVAVKDIKRGYVASDSKNDPAKEAANFIAQVIIMNHPGQI 60
           MHHE+L EALPGDNVGFNVKNVAVKD+KRGYVAS+SK+DPAKEAANF AQVIIMNHPGQI
Sbjct: 282 MHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAANFTAQVIIMNHPGQI 341

Query: 61  GNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVE 120
           GNGYAPVLDCHTSHIAVKFAE+ TKIDRRSGKELEKEPKFLKNGDAG VKMIPTKPMVVE
Sbjct: 342 GNGYAPVLDCHTSHIAVKFAEIQTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVE 401

Query: 121 TFSQYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGAKVTKAALKKK 167
           TF  YPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGAKVTKAA+KKK
Sbjct: 402 TFMSYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGAKVTKAAIKKK 447

[Close]

BLAST of Spo24936.1 vs. ExPASy Swiss-Prot
Match: EF1A_SOYBN (Elongation factor 1-alpha OS=Glycine max GN=TEFS1 PE=3 SV=2)

HSP 1 Score: 310.5 bits (794), Expect = 1.100e-83
Identity = 154/166 (92.77%), Postives = 161/166 (96.99%), Query Frame = 1


		  
Query: 1   MHHESLPEALPGDNVGFNVKNVAVKDIKRGYVASDSKNDPAKEAANFIAQVIIMNHPGQI 60
           MHHESL EA PGDNVGFNVKNVAVKD+KRGYVAS+SK+DPAKEAANF AQVII+NHPGQI
Sbjct: 282 MHHESLTEAHPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAANFTAQVIIINHPGQI 341

Query: 61  GNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVE 120
           GNGYAPVLDCHTSHIAVKFAEL+TKIDRRSGKELEKEPKFLKNGDAG VKMIPTKPMVVE
Sbjct: 342 GNGYAPVLDCHTSHIAVKFAELMTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVE 401

Query: 121 TFSQYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGAKVTKAALKKK 167
           TFS+YPPLGRFAVRDMRQTVAVGVIK+VEKKDPTGAKVTKAA KKK
Sbjct: 402 TFSEYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTGAKVTKAAQKKK 447

[Close]

BLAST of Spo24936.1 vs. TAIR (Arabidopsis)
Match: AT1G07920.1 (GTP binding Elongation factor Tu family protein)

HSP 1 Score: 307.4 bits (786), Expect = 5.500e-84
Identity = 150/165 (90.91%), Postives = 161/165 (97.58%), Query Frame = 1


		  
Query: 1   MHHESLPEALPGDNVGFNVKNVAVKDIKRGYVASDSKNDPAKEAANFIAQVIIMNHPGQI 60
           MHHESL EALPGDNVGFNVKNVAVKD+KRGYVAS+SK+DPAK AANF +QVIIMNHPGQI
Sbjct: 282 MHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAANFTSQVIIMNHPGQI 341

Query: 61  GNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVE 120
           GNGYAPVLDCHTSHIAVKF+E++TKIDRRSGKE+EKEPKFLKNGDAGMVKM PTKPMVVE
Sbjct: 342 GNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVE 401

Query: 121 TFSQYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGAKVTKAALKK 166
           TFS+YPPLGRFAVRDMRQTVAVGVIKSV+KKDPTGAKVTKAA+KK
Sbjct: 402 TFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPTGAKVTKAAVKK 446

[Close]

BLAST of Spo24936.1 vs. TAIR (Arabidopsis)
Match: AT1G07930.1 (GTP binding Elongation factor Tu family protein)

HSP 1 Score: 307.4 bits (786), Expect = 5.500e-84
Identity = 150/165 (90.91%), Postives = 161/165 (97.58%), Query Frame = 1


		  
Query: 1   MHHESLPEALPGDNVGFNVKNVAVKDIKRGYVASDSKNDPAKEAANFIAQVIIMNHPGQI 60
           MHHESL EALPGDNVGFNVKNVAVKD+KRGYVAS+SK+DPAK AANF +QVIIMNHPGQI
Sbjct: 282 MHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAANFTSQVIIMNHPGQI 341

Query: 61  GNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVE 120
           GNGYAPVLDCHTSHIAVKF+E++TKIDRRSGKE+EKEPKFLKNGDAGMVKM PTKPMVVE
Sbjct: 342 GNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVE 401

Query: 121 TFSQYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGAKVTKAALKK 166
           TFS+YPPLGRFAVRDMRQTVAVGVIKSV+KKDPTGAKVTKAA+KK
Sbjct: 402 TFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPTGAKVTKAAVKK 446

[Close]

BLAST of Spo24936.1 vs. TAIR (Arabidopsis)
Match: AT1G07940.1 (GTP binding Elongation factor Tu family protein)

HSP 1 Score: 307.4 bits (786), Expect = 5.500e-84
Identity = 150/165 (90.91%), Postives = 161/165 (97.58%), Query Frame = 1


		  
Query: 1   MHHESLPEALPGDNVGFNVKNVAVKDIKRGYVASDSKNDPAKEAANFIAQVIIMNHPGQI 60
           MHHESL EALPGDNVGFNVKNVAVKD+KRGYVAS+SK+DPAK AANF +QVIIMNHPGQI
Sbjct: 282 MHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAANFTSQVIIMNHPGQI 341

Query: 61  GNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVE 120
           GNGYAPVLDCHTSHIAVKF+E++TKIDRRSGKE+EKEPKFLKNGDAGMVKM PTKPMVVE
Sbjct: 342 GNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVE 401

Query: 121 TFSQYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGAKVTKAALKK 166
           TFS+YPPLGRFAVRDMRQTVAVGVIKSV+KKDPTGAKVTKAA+KK
Sbjct: 402 TFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPTGAKVTKAAVKK 446

[Close]

BLAST of Spo24936.1 vs. TAIR (Arabidopsis)
Match: AT5G60390.1 (GTP binding Elongation factor Tu family protein)

HSP 1 Score: 307.4 bits (786), Expect = 5.500e-84
Identity = 150/165 (90.91%), Postives = 161/165 (97.58%), Query Frame = 1


		  
Query: 1   MHHESLPEALPGDNVGFNVKNVAVKDIKRGYVASDSKNDPAKEAANFIAQVIIMNHPGQI 60
           MHHESL EALPGDNVGFNVKNVAVKD+KRGYVAS+SK+DPAK AANF +QVIIMNHPGQI
Sbjct: 282 MHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAANFTSQVIIMNHPGQI 341

Query: 61  GNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVE 120
           GNGYAPVLDCHTSHIAVKF+E++TKIDRRSGKE+EKEPKFLKNGDAGMVKM PTKPMVVE
Sbjct: 342 GNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVE 401

Query: 121 TFSQYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGAKVTKAALKK 166
           TFS+YPPLGRFAVRDMRQTVAVGVIKSV+KKDPTGAKVTKAA+KK
Sbjct: 402 TFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPTGAKVTKAAVKK 446

[Close]

BLAST of Spo24936.1 vs. TAIR (Arabidopsis)
Match: AT1G35550.1 (elongation factor Tu C-terminal domain-containing protein)

HSP 1 Score: 171.0 bits (432), Expect = 6.100e-43
Identity = 80/104 (76.92%), Postives = 91/104 (87.50%), Query Frame = 1


		  
Query: 54  MNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIP 113
           MNH GQI NGY PVLDCHTSHIAVKF+E++TKID R+G E+EKEPKFLKN +A ++ M P
Sbjct: 1   MNHLGQIKNGYTPVLDCHTSHIAVKFSEILTKIDWRTGHEIEKEPKFLKNSEAAIINMTP 60

Query: 114 TKPMVVETFSQYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGAK 158
           TKPMVVE +S YPPLGRFA+RDMRQTV VGVIKSV KKDP+GAK
Sbjct: 61  TKPMVVEAYSAYPPLGRFAIRDMRQTVGVGVIKSVVKKDPSGAK 104

The following BLAST results are available for this feature:

BLAST of Spo24936.1 vs. NCBI nr
BLAST of Spo24936.1 vs. UniProtKB/TrEMBL
BLAST of Spo24936.1 vs. ExPASy Swiss-Prot
BLAST of Spo24936.1 vs. TAIR (Arabidopsis)

BLAST of Spo24936.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902236558\|gb\|KNA24433.1\|	5.9e-88	100.	hypothetical protein SOVF_0159...	[more]
gi\|902213768\|gb\|KNA17332.1\|	5.9e-88	100.	hypothetical protein SOVF_0808...	[more]
gi\|731318327\|ref\|XP_010669660.1\|	2.5e-86	96.9	PREDICTED: elongation factor 1...	[more]
gi\|24371059\|dbj\|BAC22127.1\|	5.5e-86	96.3	eukaryotic elongation factor 1...	[more]
gi\|731318323\|ref\|XP_010669657.1\|	9.4e-86	96.3	PREDICTED: elongation factor 1...	[more]

BLAST of Spo24936.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9REQ2_SPIOL	4.1e-88	100.	Elongation factor 1-alpha OS=S...	[more]
A0A0K9RY98_SPIOL	4.1e-88	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8D0N7_BETVU	1.7e-86	96.9	Elongation factor 1-alpha OS=B...	[more]
Q8H9A9_9CARY	3.8e-86	96.3	Elongation factor 1-alpha OS=S...	[more]
A0A0K9QDK9_SPIOL	6.5e-86	97.5	Uncharacterized protein (Fragm...	[more]

BLAST of Spo24936.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
EF1A_MAIZE	4.6e-85	93.9	Elongation factor 1-alpha OS=Z...	[more]
EF1A_ORYSJ	1.0e-84	93.3	Elongation factor 1-alpha OS=O...	[more]
EF1A_VICFA	1.8e-84	92.1	Elongation factor 1-alpha OS=V...	[more]
EF1A2_DAUCA	5.1e-84	92.7	Elongation factor 1-alpha OS=D...	[more]
EF1A_SOYBN	1.1e-83	92.7	Elongation factor 1-alpha OS=G...	[more]

BLAST of Spo24936.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5


Match Name	E-value	Identity	Description
AT1G07920.1	5.5e-84	90.9	GTP binding Elongation factor ...	[more]
AT1G07930.1	5.5e-84	90.9	GTP binding Elongation factor ...	[more]
AT1G07940.1	5.5e-84	90.9	GTP binding Elongation factor ...	[more]
AT5G60390.1	5.5e-84	90.9	GTP binding Elongation factor ...	[more]
AT1G35550.1	6.1e-43	76.9	elongation factor Tu C-termina...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004160	Translation elongation factor EFTu/EF1A, C-terminal	PFAM	PF03143	GTP_EFTU_D3	coord: 40..148 score: 1.1
IPR009000	Translation protein, beta-barrel domain	unknown	SSF50447	Translation proteins	coord: 1..41 score: 2.0
IPR009001	Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal	unknown	SSF50465	EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain	coord: 45..148 score: 9.66
None	No IPR available	GENE3D	2.40.30.10		coord: 57..148 score: 9.2E-53coord: 1..56 score: 1.7
None	No IPR available	PANTHER	PTHR23115	TRANSLATION FACTOR	coord: 4..166 score: 3.3E
None	No IPR available	PANTHER	PTHR23115:SF144	SUBFAMILY NOT NAMED	coord: 4..166 score: 3.3E

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006448	regulation of translational elongation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0003746	translation elongation factor activity